mRNA_F-serratus_M_contig896.20328.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig896.20328.1
Unique NamemRNA_F-serratus_M_contig896.20328.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig896.20328.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig896contigF-serratus_M_contig896:273826..276880 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size1982
Cds size1260
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig896.20328.1prot_F-serratus_M_contig896.20328.1Fucus serratus malepolypeptideF-serratus_M_contig896 273884..276216 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932605.7280195-UTR-F-serratus_M_contig896:273825..2738831622932605.7280195-UTR-F-serratus_M_contig896:273825..273883Fucus serratus maleUTRF-serratus_M_contig896 273826..273883 +
1690964383.1117105-UTR-F-serratus_M_contig896:273825..2738831690964383.1117105-UTR-F-serratus_M_contig896:273825..273883Fucus serratus maleUTRF-serratus_M_contig896 273826..273883 +
1622932605.7987063-UTR-F-serratus_M_contig896:276216..2768801622932605.7987063-UTR-F-serratus_M_contig896:276216..276880Fucus serratus maleUTRF-serratus_M_contig896 276217..276880 +
1690964383.1590264-UTR-F-serratus_M_contig896:276216..2768801690964383.1590264-UTR-F-serratus_M_contig896:276216..276880Fucus serratus maleUTRF-serratus_M_contig896 276217..276880 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932605.7434247-CDS-F-serratus_M_contig896:273883..2743991622932605.7434247-CDS-F-serratus_M_contig896:273883..274399Fucus serratus maleCDSF-serratus_M_contig896 273884..274399 +
1690964383.1276186-CDS-F-serratus_M_contig896:273883..2743991690964383.1276186-CDS-F-serratus_M_contig896:273883..274399Fucus serratus maleCDSF-serratus_M_contig896 273884..274399 +
1622932605.765825-CDS-F-serratus_M_contig896:274736..2751351622932605.765825-CDS-F-serratus_M_contig896:274736..275135Fucus serratus maleCDSF-serratus_M_contig896 274737..275135 +
1690964383.1404135-CDS-F-serratus_M_contig896:274736..2751351690964383.1404135-CDS-F-serratus_M_contig896:274736..275135Fucus serratus maleCDSF-serratus_M_contig896 274737..275135 +
1622932605.7808218-CDS-F-serratus_M_contig896:275871..2762161622932605.7808218-CDS-F-serratus_M_contig896:275871..276216Fucus serratus maleCDSF-serratus_M_contig896 275872..276216 +
1690964383.1500876-CDS-F-serratus_M_contig896:275871..2762161690964383.1500876-CDS-F-serratus_M_contig896:275871..276216Fucus serratus maleCDSF-serratus_M_contig896 275872..276216 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig896.20328.1

>prot_F-serratus_M_contig896.20328.1 ID=prot_F-serratus_M_contig896.20328.1|Name=mRNA_F-serratus_M_contig896.20328.1|organism=Fucus serratus male|type=polypeptide|length=420bp
MPSIQLRRLPEQKRAQRIADQCGITEAYSDPCFQSPTRFFVASPEHPMMG
KWAQRSTLKYHRYDAPLYPHKGTSSLAPTKRNVRLQSCCYLVNERGRIVS
GLEASRRSGRRPLAYQQSKTHRRAPLARAKSAATRIEKRSTSPGPQRDEC
AECPPETPIFTEPPIYTPILGRVISLHKQTVHDVVIPSLPSELWGSFPSS
RVSAVVGAKQISPAAPSVSRTSPQADILDANVSLSTSLTGEGIPVDQIIE
SLCRAGGVKKEDAARISSTSHVLLPPDIRYRVRLEGTSLTRKNDGVSGVG
THSNQAVEEEESSTSCYTLGDDDHSAGNEELERKGASQTRGTEGLAPTGA
AIVGSYLMGDICTKRGADGEDTTVDSWVLSEVDPFILALRSALLLDRPAD
VASYTTEFSNNWPRTEKTA*
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mRNA from alignment at F-serratus_M_contig896:273826..276880+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig896.20328.1 ID=mRNA_F-serratus_M_contig896.20328.1|Name=mRNA_F-serratus_M_contig896.20328.1|organism=Fucus serratus male|type=mRNA|length=3055bp|location=Sequence derived from alignment at F-serratus_M_contig896:273826..276880+ (Fucus serratus male)
CGCGTGTGCACAAGCACGAGGCAGTGACCTCGAAGGAGAAAGGCGGAGAG
AGGGGACGATGCCGAGCATTCAGCTGCGAAGGCTTCCAGAGCAAAAGCGG
GCGCAACGGATCGCCGACCAATGTGGTATCACAGAGGCTTACAGCGACCC
CTGCTTCCAGAGTCCCACGCGATTCTTTGTCGCTTCCCCAGAGCACCCTA
TGATGGGTAAATGGGCACAGCGGAGCACCCTCAAATACCACCGATACGAT
GCTCCCTTGTATCCACACAAGGGCACATCATCGCTCGCTCCAACGAAGAG
AAACGTACGGCTACAGTCCTGTTGTTATCTTGTCAACGAGCGGGGGAGGA
TAGTATCAGGATTGGAGGCGTCGAGGCGATCAGGACGAAGACCCTTGGCT
TATCAGCAAAGCAAGACACACCGGAGGGCTCCACTAGCAAGGGCCAAGTC
CGCGGCAACAAGGATCGAGAAACGTTCAACTTCGCCAGGACCACAGCGCG
ATGAATGTGCAGAATGTCCCCCAGAAACACCAATTTTCACCGAGCCTCCT
ATCTACACTCCCATTTTAGGAAGGGTAAGACCTCTACCACCACGTACGGT
AAGAACTTTGTGAAGACGCGCCGCCTAGTCATTTGAAACTTGGGAGAAGA
CAAACGTCGATCTCCTTGAGCTCAAGAGTCGAGTCAGTTTTCATGCGGCG
CGCGATGCGGTATGTGGGTAAGTACGTCTGCTGCATCTAGAACGAAACAA
CGTTTTGCGATTAACGATGGGAACGAAAACATCCGTTCATCCGAAATTAT
GACACAAGGTATGACACGGAACCATCTGCTGTACCTTGCATCATCGCCTT
CACCCCCACTAAGTTCCGTGCGGTTTATCGTTACAAATTTCCACTTTTTT
ATTGTATCAAGGTGATTTCGTTGCATAAACAGACCGTTCACGACGTGGTG
ATTCCGTCCCTGCCATCGGAGCTGTGGGGCTCGTTTCCATCGTCAAGAGT
TTCGGCAGTGGTAGGCGCTAAACAAATCTCTCCAGCAGCCCCTTCTGTAA
GCCGGACCTCGCCGCAGGCGGATATACTAGACGCCAACGTTAGTCTCTCA
ACTTCACTCACGGGTGAGGGTATACCTGTAGATCAGATAATCGAGAGTCT
TTGCCGTGCCGGAGGGGTGAAAAAGGAGGACGCCGCTCGTATCAGTTCGA
CGAGCCACGTGTTGCTGCCGCCTGATATTCGATATCGGGTGCGACTCGAA
GGCACCTCCCTCACGAGGAAAAACGATGGAGTCAGTGGCGTGGGTACGCA
CTCAAACCAGGTAGGCACGCATGAAACGCTCCGAAATTCCACACGCAGCA
CAGTGTATATGCCGTTGTTCCCCGCGCTGGGGGGTCTTGAAGGTGTTTTA
TCTCTATTTTACAGTGCTGATCTAGGCAAGACGAATCTGAAAGTCGTACT
GAGCAAATACTGAGCAAATTTGTTGTACTATAATGACAGTATCTTGATCT
TAAAAGTACTTACAGGCCAGTAGTACTAGTTATGTTTCTTCTCGACGTAA
ATGTTATCATTACTTCATACCCGTAGATACATCTAGTCAATAGGAGCTAA
CCATTTTATGTATTTTAGAAGACCTTATCTACAGTACGAGACGCGCTCTA
CTTCTGCAAAACCAGAGTTTTTTCGCACGCCTCTGCCTCAAGTGTCCCAG
TTCCCTCCTCCAGTTTTAGAATTATTTTTGCCGAGAAACAATGTGGGGGC
GGAGCAAGTTTGCCCCGGGTGCAAGTGTTTCCACATTGTTAAGGGGTTTT
GGAGAATCAGGTTCTTTGATGTCCGGCCCGTCGAGGTTGCATGAGCCATA
CACCGTGACATTTGTTCCACGCTGCTAGCACTACTCATAATCATATACCA
GGTATACTTTTATTATTGGTTACGAAATGAGCACAGTAATAACACTTGCC
GTGGTCTGTGCCTTGGCATTCATCCTACGAGTTCGCAAAAGTGACATACA
TATACAACAACGGTTGCTCTTGCCGCTCGTCGGCAAAACAAAGCAGGCTG
TGGAAGAGGAGGAATCAAGCACGTCTTGTTATACCCTTGGTGATGACGAC
CATTCTGCTGGGAACGAGGAGTTGGAGCGCAAAGGCGCAAGTCAAACGCG
AGGTACTGAAGGCCTCGCGCCGACCGGAGCAGCCATTGTCGGCAGCTACT
TAATGGGTGATATTTGTACGAAAAGAGGCGCTGATGGTGAGGATACCACC
GTCGACTCGTGGGTACTTTCGGAGGTAGACCCGTTCATCTTGGCATTGAG
GAGCGCTTTGCTGCTGGATCGACCGGCTGATGTCGCCTCTTACACGACTG
AATTCTCGAATAACTGGCCTAGAACTGAAAAAACTGCGTGAGAAAACGCA
TAAACATTGAAATTTTACGAGAGAATGCCGCCTACGTCAATCATGACAGG
TAAAAAAATATTGACAACGTAGCTTGCTACGTGAATGTACTGTAGTCGTC
GTGCGTTGTGACTCCCATCGTGGAAGTAGCGTTTTGGCGTTCAGTTATAC
TTTTCTTTCTGTCTTTTAAAAGAGTCCCACTGGGGTAGTATGCACTTGCG
TGTGTTCGGTGCGTCTACAACGTCCAAGCAGAGATGACCCGACCACTGCC
TGGCACGGCGACGGTTTGGGGGCTGTAGGAAAGGTACGAAATCCAACGCG
AACCTGCCTAACTTGTGTCAGACTTCAACCTCTCGTTGGAAACCTCTAAG
GTTACTATTTGTAATGGCAGAGGCAGCAATCGATCTCCATATATCTTGTT
TGTAGATGCTCGGTATTCGATGATTGTAACTGTCACTTGGGGTTTCCCAT
ATATATAGTTGGGATACTAGATCGATCGTCTGGCCTGGTTGGAGCTCGTC
CGGGTCACTCCCTTGGTGTGTTCCCTTTAGGTTCTGCATGTGAGTAATCC
AAGGTCAAGGAGTCAACCTTATCTATATTTTACCCTCACCTACGACACTG
CAGGCGTGTTAACTTTGACCACGCGCCGGAATTACAAACACGATAACAAC
TTTTC
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Coding sequence (CDS) from alignment at F-serratus_M_contig896:273826..276880+

>mRNA_F-serratus_M_contig896.20328.1 ID=mRNA_F-serratus_M_contig896.20328.1|Name=mRNA_F-serratus_M_contig896.20328.1|organism=Fucus serratus male|type=CDS|length=2520bp|location=Sequence derived from alignment at F-serratus_M_contig896:273826..276880+ (Fucus serratus male)
ATGCCGAGCATTCAGCTGCGAAGGCTTCCAGAGCAAAAGCGGGCGCAACG
GATCGCCGACCAATGTGGTATCACAGAGGCTTACAGCGACCCCTGCTTCC
AGAGTCCCACGCGATTCTTTGTCGCTTCCCCAGAGCACCCTATGATGGGT
AAATGGGCACAGCGGAGCACCCTCAAATACCACCGATACGATGCTCCCTT
GTATCCACACAAGGGCACATCATCGCTCGCTCCAACGAAGAGAAACGTAC
GGCTACAGTCCTGTTGTTATCTTGTCAACGAGCGGGGGAGGATAGTATCA
GGATTGGAGGCGTCGAGGCGATCAGGACGAAGACCCTTGGCTTATCAGCA
AAGCAAGACACACCGGAGGGCTCCACTAGCAAGGGCCAAGTCCGCGGCAA
CAAGGATCGAGAAACGTTCAACTTCGCCAGGACCACAGCGCGATGAATGT
GCAGAATGTCCCCCAGAAACACCAATTTTCACCGAGCCTCCTATCTACAC
TCCCATTTTAGGAAGGATGCCGAGCATTCAGCTGCGAAGGCTTCCAGAGC
AAAAGCGGGCGCAACGGATCGCCGACCAATGTGGTATCACAGAGGCTTAC
AGCGACCCCTGCTTCCAGAGTCCCACGCGATTCTTTGTCGCTTCCCCAGA
GCACCCTATGATGGGTAAATGGGCACAGCGGAGCACCCTCAAATACCACC
GATACGATGCTCCCTTGTATCCACACAAGGGCACATCATCGCTCGCTCCA
ACGAAGAGAAACGTACGGCTACAGTCCTGTTGTTATCTTGTCAACGAGCG
GGGGAGGATAGTATCAGGATTGGAGGCGTCGAGGCGATCAGGACGAAGAC
CCTTGGCTTATCAGCAAAGCAAGACACACCGGAGGGCTCCACTAGCAAGG
GCCAAGTCCGCGGCAACAAGGATCGAGAAACGTTCAACTTCGCCAGGACC
ACAGCGCGATGAATGTGCAGAATGTCCCCCAGAAACACCAATTTTCACCG
AGCCTCCTATCTACACTCCCATTTTAGGAAGGGTGATTTCGTTGCATAAA
CAGACCGTTCACGACGTGGTGATTCCGTCCCTGCCATCGGAGCTGTGGGG
CTCGTTTCCATCGTCAAGAGTTTCGGCAGTGGTAGGCGCTAAACAAATCT
CTCCAGCAGCCCCTTCTGTAAGCCGGACCTCGCCGCAGGCGGATATACTA
GACGCCAACGTTAGTCTCTCAACTTCACTCACGGGTGAGGGTATACCTGT
AGATCAGATAATCGAGAGTCTTTGCCGTGCCGGAGGGGTGAAAAAGGAGG
ACGCCGCTCGTATCAGTTCGACGAGCCACGTGTTGCTGCCGCCTGATATT
CGATATCGGGTGCGACTCGAAGGCACCTCCCTCACGAGGAAAAACGATGG
AGTCAGTGGCGTGGGTACGCACTCAAACCAGGTGATTTCGTTGCATAAAC
AGACCGTTCACGACGTGGTGATTCCGTCCCTGCCATCGGAGCTGTGGGGC
TCGTTTCCATCGTCAAGAGTTTCGGCAGTGGTAGGCGCTAAACAAATCTC
TCCAGCAGCCCCTTCTGTAAGCCGGACCTCGCCGCAGGCGGATATACTAG
ACGCCAACGTTAGTCTCTCAACTTCACTCACGGGTGAGGGTATACCTGTA
GATCAGATAATCGAGAGTCTTTGCCGTGCCGGAGGGGTGAAAAAGGAGGA
CGCCGCTCGTATCAGTTCGACGAGCCACGTGTTGCTGCCGCCTGATATTC
GATATCGGGTGCGACTCGAAGGCACCTCCCTCACGAGGAAAAACGATGGA
GTCAGTGGCGTGGGTACGCACTCAAACCAGGCTGTGGAAGAGGAGGAATC
AAGCACGTCTTGTTATACCCTTGGTGATGACGACCATTCTGCTGGGAACG
AGGAGTTGGAGCGCAAAGGCGCAAGTCAAACGCGAGGTACTGAAGGCCTC
GCGCCGACCGGAGCAGCCATTGTCGGCAGCTACTTAATGGGTGATATTTG
TACGAAAAGAGGCGCTGATGGTGAGGATACCACCGTCGACTCGTGGGTAC
TTTCGGAGGTAGACCCGTTCATCTTGGCATTGAGGAGCGCTTTGCTGCTG
GATCGACCGGCTGATGTCGCCTCTTACACGACTGAATTCTCGAATAACTG
GCCTAGAACTGAAAAAACTGCGTGAGCTGTGGAAGAGGAGGAATCAAGCA
CGTCTTGTTATACCCTTGGTGATGACGACCATTCTGCTGGGAACGAGGAG
TTGGAGCGCAAAGGCGCAAGTCAAACGCGAGGTACTGAAGGCCTCGCGCC
GACCGGAGCAGCCATTGTCGGCAGCTACTTAATGGGTGATATTTGTACGA
AAAGAGGCGCTGATGGTGAGGATACCACCGTCGACTCGTGGGTACTTTCG
GAGGTAGACCCGTTCATCTTGGCATTGAGGAGCGCTTTGCTGCTGGATCG
ACCGGCTGATGTCGCCTCTTACACGACTGAATTCTCGAATAACTGGCCTA
GAACTGAAAAAACTGCGTGA
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