mRNA_F-serratus_M_contig893.20301.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig893.20301.1
Unique NamemRNA_F-serratus_M_contig893.20301.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig893.20301.1 vs. uniprot
Match: D7FGT1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGT1_ECTSI)

HSP 1 Score: 144 bits (364), Expect = 5.790e-39
Identity = 80/158 (50.63%), Postives = 97/158 (61.39%), Query Frame = 1
Query:   46 DSDSDFTNDAWDGGCLWNNGSFIVDGLTQFDDCFIIGGGESSPGKGGAIYNDVNGYIAFDGGVNIEDTSLTDDEGNSGAGVYNLGEINVAGDSTFQDLTADTDDKAGGAIYNGEGATFKFKNDAVATF--IXXXXXXXXXXXXAGDFSFSGPALFVQS 513
            D DSDF +    GGC+W  GSFIVDG   F  C I G GES PG GGAIY    G ++F+ GV I +T +TDD G  G G+YNLGE+ +AGDS F+D++A     +G AIYNGEGA F F NDA A F  +             G F FSGPALFV++
Sbjct:  144 DEDSDFASFVRSGGCVWTAGSFIVDGEATFTRCDITGAGESPPGPGGAIYVGATGSVSFNQGVAISETFITDDFGGQGGGIYNLGEVTIAGDSRFEDISA----SSGVAIYNGEGAEFYFTNDASAFFRDLNNRDSVGSGLTNLGYFEFSGPALFVEA 297          
BLAST of mRNA_F-serratus_M_contig893.20301.1 vs. uniprot
Match: A0A6H5JCE5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCE5_9PHAE)

HSP 1 Score: 141 bits (356), Expect = 4.070e-37
Identity = 78/173 (45.09%), Postives = 101/173 (58.38%), Query Frame = 1
Query:    1 MGSLQVYSYGTTSVTDSDSDFTNDAWDGGCLWNNGSFIVDGLTQFDDCFIIGGGESSPGKGGAIYNDVNGYIAFDGGVNIEDTSLTDDEGNSGAGVYNLGEINVAGDSTFQDLTADTDDKAGGAIYNGEGATFKFKNDAVATF--IXXXXXXXXXXXXAGDFSFSGPALFVQS 513
            +  +Q+      +  D DSDF++    GGC+W  G F VDG   F  C I G GES PG GGA+Y    G + F+GGV I DT +TDD G SG G+YNLG++N+ GDS F+D++A     +G AIYNGEGATF F++ A A F  +             G F FSGPALF  +
Sbjct:  210 LNDVQMQDIAIINERDEDSDFSSFVRSGGCVWTAGYFRVDGEATFTGCDISGAGESPPGPGGAVYVGETGSVLFNGGVTITDTHITDDFGGSGGGIYNLGKVNIKGDSRFEDISA----SSGVAIYNGEGATFNFRSGARAFFKDLNNRDSEGSALFNRGFFKFSGPALFFDA 378          
BLAST of mRNA_F-serratus_M_contig893.20301.1 vs. uniprot
Match: D7G1Q9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1Q9_ECTSI)

HSP 1 Score: 138 bits (347), Expect = 1.050e-36
Identity = 76/158 (48.10%), Postives = 94/158 (59.49%), Query Frame = 1
Query:   46 DSDSDFTNDAWDGGCLWNNGSFIVDGLTQFDDCFIIGGGESSPGKGGAIYNDVNGYIAFDGGVNIEDTSLTDDEGNSGAGVYNLGEINVAGDSTFQDLTADTDDKAGGAIYNGEGATFKFKNDAVATF--IXXXXXXXXXXXXAGDFSFSGPALFVQS 513
            D DSDF +    GGC+W  G F VDG   F  C IIG GES PG GGA+Y    G + F+ GV I +TS+TDD G  G G+YNLG++N+ GDS F++++A     AG AIYNGEGATF F+N A A F  +             G F FSGPA F  +
Sbjct:  116 DEDSDFASFVRSGGCVWTAGYFRVDGEATFTGCDIIGAGESPPGPGGAVYVGETGSVLFNEGVTITETSITDDFGGKGGGIYNLGKVNIKGDSRFEEISA----SAGVAIYNGEGATFNFRNGAGAFFRDLNNRDSEGSALVNLGFFKFSGPAFFFDA 269          
BLAST of mRNA_F-serratus_M_contig893.20301.1 vs. uniprot
Match: D8LG63_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG63_ECTSI)

HSP 1 Score: 133 bits (335), Expect = 2.370e-36
Identity = 74/164 (45.12%), Postives = 98/164 (59.76%), Query Frame = 1
Query:   28 GTTSVTDSDSDFTNDAWDGGCLWNNGSFIVDGLTQFDDCFIIGGGESSPGKGGAIYNDVNGYIAFDGGVNIEDTSLTDDEGNSGAGVYNLGEINVAGDSTFQDLTADTDDKAGGAIYNGEGATFKFKNDAVATF--IXXXXXXXXXXXXAGDFSFSGPALFVQS 513
            G  + TD DSD+ +    GGC+   G+F V+G   F  C  +G GES+PG GGAI+    G ++F  GV I +TS+TDD G  G G+YNLGE+NVAG S F+D++A     +G A+YNGEGA  +F N A A F  +             G F FSGPALFV++
Sbjct:    5 GIINETDEDSDYASYQHSGGCVRTAGTFTVNGDATFTGCESVGAGESAPGPGGAIFVSETGSVSFSEGVTIMETSITDDFGGQGGGIYNLGEVNVAGGSRFEDISA----SSGVAVYNGEGAQLRFTNGATACFRDLSNRDSVGSALYYLGYFEFSGPALFVEA 164          
BLAST of mRNA_F-serratus_M_contig893.20301.1 vs. uniprot
Match: D7G0Q4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0Q4_ECTSI)

HSP 1 Score: 134 bits (338), Expect = 4.140e-35
Identity = 74/173 (42.77%), Postives = 100/173 (57.80%), Query Frame = 1
Query:    1 MGSLQVYSYGTTSVTDSDSDFTNDAWDGGCLWNNGSFIVDGLTQFDDCFIIGGGESSPGKGGAIYNDVNGYIAFDGGVNIEDTSLTDDEGNSGAGVYNLGEINVAGDSTFQDLTADTDDKAGGAIYNGEGATFKFKNDAVATF--IXXXXXXXXXXXXAGDFSFSGPALFVQS 513
            +  +Q+     T+  D DSD      DGGC+W  G F VDG   F  C IIG GES PG GGA++ D  G + F+ GV I DT +T+D G  G G++NLG++N+ GDS F++L+A    ++G AI+NGE A+F F+N A A F  +             G F FSGP LFV +
Sbjct:  129 LNDVQIRDVRITNERDGDSDNAVFVRDGGCVWTAGFFRVDGEATFTSCAIIGTGESPPGSGGAVFVDATGSVLFNQGVAISDTFITNDGGGDGGGIFNLGKVNIKGDSRFEELSA----RSGAAIFNGEDASFNFRNGASAFFRDLSNRDSEGSALVNLGFFKFSGPVLFVDA 297          
BLAST of mRNA_F-serratus_M_contig893.20301.1 vs. uniprot
Match: D7G2Y5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2Y5_ECTSI)

HSP 1 Score: 127 bits (319), Expect = 3.350e-32
Identity = 74/169 (43.79%), Postives = 97/169 (57.40%), Query Frame = 1
Query:   10 LQVYSYGTTSVTDSDSDFTNDAWDGGCLWNNGSFIVDGLTQFDDCFIIGGGESSPGKGGAIYNDVNGYIAFDGGVNIEDTSLTDDEGNSGAGVYNLGEINVAGDSTFQDLTADTDDKAGGAIYNGEGATFKFKNDAVATFIXXXXXXXXXXXX--AGDFSFSGPALFVQ 510
            L     G  SV +  SDF +    GGC++ +G F V+G   F  C   GGGESSPG GG +Y    G + F G V ++D S+ DDEGN+G G+YNLG++N+ G++ FQ+L A+    AGGAI+NG GA F+FK  A A FI              AG F  SGPA  V+
Sbjct:  129 LTTSEVGVRSVPEEGSDFASYQLIGGCVYVDGYFRVEGHASFVGCENSGGGESSPGPGGVMYVGETGSVLFAGEVTMQDVSIIDDEGNNGGGIYNLGKVNIKGNAVFQNLRAE----AGGAIFNGSGAEFRFKKGATADFIDCLSFDGIGGAVFNAGYFKLSGPAEVVE 293          
BLAST of mRNA_F-serratus_M_contig893.20301.1 vs. uniprot
Match: A0A6H5JYQ0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYQ0_9PHAE)

HSP 1 Score: 121 bits (303), Expect = 7.410e-29
Identity = 74/173 (42.77%), Postives = 97/173 (56.07%), Query Frame = 1
Query:   10 LQVYSYGTTSVTDSDSDFTNDAWDGGCL----WNNGSFIVDGLTQFDDCFIIGGGESSPGKGGAIYNDVNGYIAFDGGVNIEDTSLTDDEGNSGAGVYNLGEINVAGDSTFQDLTADTDDKAGGAIYNGEGATFKFKNDAVATFIXXXXXXXXXXXX--AGDFSFSGPALFVQ 510
            L     G  SV +  SDF +    GGC+    + +G F V+G   F  C   GGGESSPG GG +Y    G + F G V ++D S+ DDEGN+G G+YNLG++N+ G++ FQ+L A+    AGGAI+NG GA F+FK  A A FI              AG F  SGPA  V+
Sbjct:  359 LTTSEVGVRSVPEEGSDFASYELIGGCVRAYTYVDGYFRVEGHASFVGCENSGGGESSPGPGGVMYVGETGSVLFAGEVTMQDVSIIDDEGNNGGGIYNLGKVNIKGNALFQNLRAE----AGGAIFNGSGAEFRFKKGATADFIDCLSFDGTGGAVFNAGYFKLSGPAEVVE 527          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig893.20301.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D7FGT1_ECTSI5.790e-3950.63Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JCE5_9PHAE4.070e-3745.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G1Q9_ECTSI1.050e-3648.10Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LG63_ECTSI2.370e-3645.12Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G0Q4_ECTSI4.140e-3542.77Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G2Y5_ECTSI3.350e-3243.79Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JYQ0_9PHAE7.410e-2942.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig893contigF-serratus_M_contig893:111346..112930 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size513
Cds size513
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig893.20301.1prot_F-serratus_M_contig893.20301.1Fucus serratus malepolypeptideF-serratus_M_contig893 111346..112930 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932601.525659-CDS-F-serratus_M_contig893:111345..1114141622932601.525659-CDS-F-serratus_M_contig893:111345..111414Fucus serratus maleCDSF-serratus_M_contig893 111346..111414 -
1690964380.9846997-CDS-F-serratus_M_contig893:111345..1114141690964380.9846997-CDS-F-serratus_M_contig893:111345..111414Fucus serratus maleCDSF-serratus_M_contig893 111346..111414 -
1622932601.5405524-CDS-F-serratus_M_contig893:111557..1116411622932601.5405524-CDS-F-serratus_M_contig893:111557..111641Fucus serratus maleCDSF-serratus_M_contig893 111558..111641 -
1690964380.9957957-CDS-F-serratus_M_contig893:111557..1116411690964380.9957957-CDS-F-serratus_M_contig893:111557..111641Fucus serratus maleCDSF-serratus_M_contig893 111558..111641 -
1622932601.576425-CDS-F-serratus_M_contig893:111957..1120591622932601.576425-CDS-F-serratus_M_contig893:111957..112059Fucus serratus maleCDSF-serratus_M_contig893 111958..112059 -
1690964381.0048695-CDS-F-serratus_M_contig893:111957..1120591690964381.0048695-CDS-F-serratus_M_contig893:111957..112059Fucus serratus maleCDSF-serratus_M_contig893 111958..112059 -
1622932601.5919926-CDS-F-serratus_M_contig893:112342..1124981622932601.5919926-CDS-F-serratus_M_contig893:112342..112498Fucus serratus maleCDSF-serratus_M_contig893 112343..112498 -
1690964381.0147011-CDS-F-serratus_M_contig893:112342..1124981690964381.0147011-CDS-F-serratus_M_contig893:112342..112498Fucus serratus maleCDSF-serratus_M_contig893 112343..112498 -
1622932601.6056523-CDS-F-serratus_M_contig893:112828..1129301622932601.6056523-CDS-F-serratus_M_contig893:112828..112930Fucus serratus maleCDSF-serratus_M_contig893 112829..112930 -
1690964381.0247698-CDS-F-serratus_M_contig893:112828..1129301690964381.0247698-CDS-F-serratus_M_contig893:112828..112930Fucus serratus maleCDSF-serratus_M_contig893 112829..112930 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig893.20301.1

>prot_F-serratus_M_contig893.20301.1 ID=prot_F-serratus_M_contig893.20301.1|Name=mRNA_F-serratus_M_contig893.20301.1|organism=Fucus serratus male|type=polypeptide|length=171bp
MGSLQVYSYGTTSVTDSDSDFTNDAWDGGCLWNNGSFIVDGLTQFDDCFI
IGGGESSPGKGGAIYNDVNGYIAFDGGVNIEDTSLTDDEGNSGAGVYNLG
EINVAGDSTFQDLTADTDDKAGGAIYNGEGATFKFKNDAVATFIDTDAAY
GGGVYNAGDFSFSGPALFVQS
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mRNA from alignment at F-serratus_M_contig893:111346..112930-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig893.20301.1 ID=mRNA_F-serratus_M_contig893.20301.1|Name=mRNA_F-serratus_M_contig893.20301.1|organism=Fucus serratus male|type=mRNA|length=1585bp|location=Sequence derived from alignment at F-serratus_M_contig893:111346..112930- (Fucus serratus male)
ATGGGATCTCTTCAAGTGTACAGCTACGGGACAACAAGTGTAACCGACAG TGATTCTGACTTCACTAATGACGCGTGGGACGGCGGCTGCCTTTGGAACA ATGTACGACACGACGCCGTTAGTTGCCTTACTGGTCGTTCTTCTGGGGGA ATGAATTGTTTCCGCACGTACGTTCCACTTTGGCGAGGTGGATCTCGAGC TTACGCTCGTCTTTGGCTTTGGTGTCGCTCGATTATTCGTTCTGCTCACG TGCACAACTTGCTGGCTTTCAAAAGAGGGCAGTAACATTTGCACTTTCTC CGATGTTCCATTGGCGAGCTATCATTTACACCCATAACAAATCATATATG ATACTATCATCGTGATGCCGATATACTATGAATACTTTTCGTGACAATTG AATCTGAACACACTCCACGGATGGATGTGTAGGGCTCCTTCATCGTCGAT GGACTTACCCAATTCGACGACTGTTTTATTATCGGTGGAGGCGAGAGCTC GCCGGGCAAGGGAGGGGCGATATACAACGATGTGAATGGCTACATTGCCT TCGATGGCGGTGTGAACATCGAGGACACTTCTCTTACCGTGAGTAATGAA CATGACATGACATGATTGGTTGGCTCTTTTGGCGGACGACTGATTTCGCA CACGTCTGGTTGTGTTCGAAGAATAACCGAGTTTCATTAATGTGATCGAT AGCAACCCATGTTAGATGACAATTTTTCGCCTACACCACGTGCGCAGAAC CTTTTTTACGGTCTCGATCACGTGTCGCAAGATCGATTAGATATTCAGGA TCGTTTGAATGGATTCTGCATTCATATTGACGCCTACGAGCGTACCGATT CCTCGCATCGCCATGATCAAGGATGACGAGGGAAACAGCGGTGCCGGCGT TTACAACCTTGGAGAAATTAATGTGGCAGGAGACTCAACCTTCCAGGACT TAACAGCCGACACGGACGATAAAGTGCGCGCTTGAGGCAGGAATTCGATC CAAGGCAGAATTTCGACCCGAGCCTTAGCTTGACCCATTACTTCGTACAA CAACGCAATATTCTTCGCGACTAAATAACGTTTAAGGGCCGCTTGCCATC CCCCACGTCTTGGTATCGGTGGGAACCGTCATGTTTGCGCAGCTCTGGTC GTCCCTAGCCGACGTGAAGGGATCTCAGTTATACAGACGACGCCGCGGTT GACAATCGATCTGATGACTTCGGGTGCGTTTCTAATTTCGTGCACGCGCC GGATGTTCATCTACCTCTGTGCGGTGTGGGTGTCAAAAGGCGGGTGGTGC AATCTACAACGGCGAAGGAGCGACGTTCAAGTTCAAGAACGACGCCGTTG CCACTTTCATCGACACAGATGCCGTGAGTAAACGAATACCGTGTTACAAC TTTTCTTCACCCCTCCCTGTGCGTCATCCGTTCTAGGTGCCGCGTCAGAC GATATCAGTAGACCACGATGAATCAGATTCAAACTCAACCGTTGCTGCTC CTCGCGTCCGCATCAGGCCTATGGTGGGGGCGTCTACAACGCGGGAGATT TCAGCTTCAGTGGCCCTGCTCTCTTCGTCCAGAGC
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Coding sequence (CDS) from alignment at F-serratus_M_contig893:111346..112930-

>mRNA_F-serratus_M_contig893.20301.1 ID=mRNA_F-serratus_M_contig893.20301.1|Name=mRNA_F-serratus_M_contig893.20301.1|organism=Fucus serratus male|type=CDS|length=1026bp|location=Sequence derived from alignment at F-serratus_M_contig893:111346..112930- (Fucus serratus male)
ATGGGATCTCTTCAAGTGTACAGCTACGGGACAACAAGTGTAACCGACAG
TGATTCTGACTTCACTAATGACGCGTGGGACGGCGGCTGCCTTTGGAACA
ATATGGGATCTCTTCAAGTGTACAGCTACGGGACAACAAGTGTAACCGAC
AGTGATTCTGACTTCACTAATGACGCGTGGGACGGCGGCTGCCTTTGGAA
CAATGGCTCCTTCATCGTCGATGGACTTACCCAATTCGACGACTGTTTTA
TTATCGGTGGAGGCGAGAGCTCGCCGGGCAAGGGAGGGGCGATATACAAC
GATGTGAATGGCTACATTGCCTTCGATGGCGGTGTGAACATCGAGGACAC
TTCTCTTACCGGCTCCTTCATCGTCGATGGACTTACCCAATTCGACGACT
GTTTTATTATCGGTGGAGGCGAGAGCTCGCCGGGCAAGGGAGGGGCGATA
TACAACGATGTGAATGGCTACATTGCCTTCGATGGCGGTGTGAACATCGA
GGACACTTCTCTTACCGATGACGAGGGAAACAGCGGTGCCGGCGTTTACA
ACCTTGGAGAAATTAATGTGGCAGGAGACTCAACCTTCCAGGACTTAACA
GCCGACACGGACGATAAAGATGACGAGGGAAACAGCGGTGCCGGCGTTTA
CAACCTTGGAGAAATTAATGTGGCAGGAGACTCAACCTTCCAGGACTTAA
CAGCCGACACGGACGATAAAGCGGGTGGTGCAATCTACAACGGCGAAGGA
GCGACGTTCAAGTTCAAGAACGACGCCGTTGCCACTTTCATCGACACAGA
TGCCGCGGGTGGTGCAATCTACAACGGCGAAGGAGCGACGTTCAAGTTCA
AGAACGACGCCGTTGCCACTTTCATCGACACAGATGCCGCCTATGGTGGG
GGCGTCTACAACGCGGGAGATTTCAGCTTCAGTGGCCCTGCTCTCTTCGT
CCAGAGCGCCTATGGTGGGGGCGTCTACAACGCGGGAGATTTCAGCTTCA
GTGGCCCTGCTCTCTTCGTCCAGAGC
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