mRNA_F-serratus_M_contig891.20290.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig891.20290.1
Unique NamemRNA_F-serratus_M_contig891.20290.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig891.20290.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig891contigF-serratus_M_contig891:344092..345388 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons4
Model size276
Cds size153
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig891.20290.1prot_F-serratus_M_contig891.20290.1Fucus serratus malepolypeptideF-serratus_M_contig891 344092..345068 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932596.6164777-CDS-F-serratus_M_contig891:344091..3441541622932596.6164777-CDS-F-serratus_M_contig891:344091..344154Fucus serratus maleCDSF-serratus_M_contig891 344092..344154 +
1690964378.5692618-CDS-F-serratus_M_contig891:344091..3441541690964378.5692618-CDS-F-serratus_M_contig891:344091..344154Fucus serratus maleCDSF-serratus_M_contig891 344092..344154 +
1622932596.6316998-CDS-F-serratus_M_contig891:344775..3448371622932596.6316998-CDS-F-serratus_M_contig891:344775..344837Fucus serratus maleCDSF-serratus_M_contig891 344776..344837 +
1690964378.578623-CDS-F-serratus_M_contig891:344775..3448371690964378.578623-CDS-F-serratus_M_contig891:344775..344837Fucus serratus maleCDSF-serratus_M_contig891 344776..344837 +
1622932596.6468225-CDS-F-serratus_M_contig891:345040..3450681622932596.6468225-CDS-F-serratus_M_contig891:345040..345068Fucus serratus maleCDSF-serratus_M_contig891 345041..345068 +
1690964378.586943-CDS-F-serratus_M_contig891:345040..3450681690964378.586943-CDS-F-serratus_M_contig891:345040..345068Fucus serratus maleCDSF-serratus_M_contig891 345041..345068 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932596.6645186-UTR-F-serratus_M_contig891:345068..3450751622932596.6645186-UTR-F-serratus_M_contig891:345068..345075Fucus serratus maleUTRF-serratus_M_contig891 345069..345075 +
1690964378.6017938-UTR-F-serratus_M_contig891:345068..3450751690964378.6017938-UTR-F-serratus_M_contig891:345068..345075Fucus serratus maleUTRF-serratus_M_contig891 345069..345075 +
1622932596.6826208-UTR-F-serratus_M_contig891:345273..3453881622932596.6826208-UTR-F-serratus_M_contig891:345273..345388Fucus serratus maleUTRF-serratus_M_contig891 345274..345388 +
1690964378.6174176-UTR-F-serratus_M_contig891:345273..3453881690964378.6174176-UTR-F-serratus_M_contig891:345273..345388Fucus serratus maleUTRF-serratus_M_contig891 345274..345388 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig891.20290.1

>prot_F-serratus_M_contig891.20290.1 ID=prot_F-serratus_M_contig891.20290.1|Name=mRNA_F-serratus_M_contig891.20290.1|organism=Fucus serratus male|type=polypeptide|length=51bp
HPRHHSHQKRRHKPKPPLNHKPFRCGSYRPPPKPATKTKSPRPLTKTPEP
*
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mRNA from alignment at F-serratus_M_contig891:344092..345388+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig891.20290.1 ID=mRNA_F-serratus_M_contig891.20290.1|Name=mRNA_F-serratus_M_contig891.20290.1|organism=Fucus serratus male|type=mRNA|length=1297bp|location=Sequence derived from alignment at F-serratus_M_contig891:344092..345388+ (Fucus serratus male)
CATCCAAGGCACCACTCCCACCAGAAGCGGCGCCACAAACCGAAGCCGCC
CCTCAACCACAAGGTGAGCTCCTGCACGTTCTTCGACCAACAGGTACCTT
CGCTTTTCTTCCTTCGATCACGATACTCTGAAAGTTGGGCTTAATCTGTG
TAAGTCGGCGCCTGGTGGTTCAATTATTGCTCAGCGCCCATTTCGTCACC
CCCTTGAATATGGCTTCAAACCTAATGTTAGCCCAAACTCTTATCCCTTC
CTCGAGCTGATCAACAAGGGAGGACTGATTGATGTCTGCCGTGTTACGAC
GATTAAGCATAGATCCATGGTCGACATCTAGATTTTGAAGGCGCCTCTCC
GTTTTTCTCGTCCCTTGCTATCTGGCTCTTGATATTGATACTGGCCGTAG
CGACCACGGTACGTAATACAGATCCATCTTGATGTTGATGCCTGATGGCA
TGGAAGTTGGCTTTTTCATTTATAGTAAATTTAAATGGGTAGGCTCTACT
GTATTCTACACTACCCTCGAGTTTGACTTAATTTTGAAAAATCAATATCA
GTAGGCCTCTCTCCAGCCCGTCCGTCGCTGCCATGAAGATCGTGAATATT
TTGTCCGATGTTGACTTTCTTCACCTGTTGACAATATAAATAGCATTATT
ATGTCGCCCTTGTCCCACGTGTCGTACTTTACAGCCGTTCCGATGTGGAT
CGTATCGCCCtCCTCCGAAGCCGGCCACCAAGACCAAGTCGCCCAGGTAC
GCTCTTGCACGGTCAGCTGACTTCTATAGCTCGATAGGATGGGCGCCTAA
GTCTAGAATATAGCACGTTCCGAGTCGAATTCTGCTCGTGGGTCCGACGA
CGGGCTCCCAGCCTTTTGTAATGGTGAATGGCCTTGCTTACCTCTTACCT
CTTACCTTGCCGCATATCTTcCCTCTCTGCGTCTTGTGTGATTGAACAGG
CCACTGACCAAAACACCTGAGCCCTGAAGCCAAGGTACGTCGCCCGCGTC
GTTTGCGATGCTAGAAATTCAGTAACCCGCCGTTACGCCTCCGTGACCAC
CGTACAACAAGCCCACTGTTGTGATGCTGCTGTAGACCGTTTCCAAGCGC
TACACATGTTCGAACCTCGAGGGGCATCTGTATCAATATCGTGCAGTATT
CTACCACTCACTACAAGACTCCGTATTGACAGGTGCTCTAGACCGGTGAG
ACTAGGAGGAGTTGACGAAGACCGAGATTGCGCGATTTATCTCGATCCGG
CAAGGTAGTGTAGATGAGACAAGCTTGGTGATTGTTCGGATTTCGAG
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Coding sequence (CDS) from alignment at F-serratus_M_contig891:344092..345388+

>mRNA_F-serratus_M_contig891.20290.1 ID=mRNA_F-serratus_M_contig891.20290.1|Name=mRNA_F-serratus_M_contig891.20290.1|organism=Fucus serratus male|type=CDS|length=306bp|location=Sequence derived from alignment at F-serratus_M_contig891:344092..345388+ (Fucus serratus male)
CATCCAAGGCACCACTCCCACCAGAAGCGGCGCCACAAACCGAAGCCGCC
CCTCAACCACAAGCATCCAAGGCACCACTCCCACCAGAAGCGGCGCCACA
AACCGAAGCCGCCCCTCAACCACAAGCCGTTCCGATGTGGATCGTATCGC
CCtCCTCCGAAGCCGGCCACCAAGACCAAGTCGCCCAGCCGTTCCGATGT
GGATCGTATCGCCCtCCTCCGAAGCCGGCCACCAAGACCAAGTCGCCCAG
GCCACTGACCAAAACACCTGAGCCCTGAGCCACTGACCAAAACACCTGAG
CCCTGA
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