mRNA_F-serratus_M_contig891.20288.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig891.20288.1
Unique NamemRNA_F-serratus_M_contig891.20288.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig891.20288.1 vs. uniprot
Match: D7FSH6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSH6_ECTSI)

HSP 1 Score: 94.0 bits (232), Expect = 5.360e-24
Identity = 44/64 (68.75%), Postives = 52/64 (81.25%), Query Frame = 1 
Query:    1 RTMVMRSLPRAGGGHDDDHPHLVFDTPTKGPFTKTQAGVVVGGGVFLAIAIVIGAVSHQQIKHG 192
            RT+V RS+PRAGGGHDD HPHLVF+T  K PFTK  AG++VGGGVF  I IV+GA++HQ  KHG
Sbjct:    2 RTIVSRSMPRAGGGHDD-HPHLVFET-AKEPFTKFSAGLIVGGGVFAGIGIVVGAITHQNYKHG 63
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BLAST of mRNA_F-serratus_M_contig891.20288.1 vs. uniprot
Match: A0A6H5JHE0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHE0_9PHAE)

HSP 1 Score: 90.9 bits (224), Expect = 1.410e-22
Identity = 45/64 (70.31%), Postives = 51/64 (79.69%), Query Frame = 1 
Query:    1 RTMVMRSLPRAGGGHDDDHPHLVFDTPTKGPFTKTQAGVVVGGGVFLAIAIVIGAVSHQQIKHG 192
            RT+V RS+PRAGGGHDD HPHLVFDT  K PFTK  AG++VGG VF  I IV+GAV+HQ  KHG
Sbjct:   19 RTIVTRSMPRAGGGHDD-HPHLVFDT-AKEPFTKFSAGLLVGGLVFSGIGIVVGAVTHQNYKHG 80
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BLAST of mRNA_F-serratus_M_contig891.20288.1 vs. uniprot
Match: A0A836CJR8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJR8_9STRA)

HSP 1 Score: 47.0 bits (110), Expect = 3.340e-5
Identity = 28/70 (40.00%), Postives = 39/70 (55.71%), Query Frame = 1 
Query:    1 RTMVMRSLPRAGGGHDDDHP-------HLVFDTPTKGPFTKTQAGVVVGGGVFLAIAIVIGAVSHQQIKH 189
            R++  R+LPR GGG             HLVF+   KGPFTK Q  ++VGGG+ + I +V+ A   Q  K+
Sbjct:   23 RSIATRTLPRNGGGXXXXXXXXXXXXXHLVFE---KGPFTKRQGLILVGGGLTVGIGVVMLAFKLQLAKN 89
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig891.20288.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FSH6_ECTSI5.360e-2468.75Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JHE0_9PHAE1.410e-2270.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CJR8_9STRA3.340e-540.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig891contigF-serratus_M_contig891:265394..266337 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-11_003770.1
Exons2
Model size192
Cds size186
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig891.20288.1prot_F-serratus_M_contig891.20288.1Fucus serratus malepolypeptideF-serratus_M_contig891 265400..266337 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932599.3042848-UTR-F-serratus_M_contig891:265393..2653991622932599.3042848-UTR-F-serratus_M_contig891:265393..265399Fucus serratus maleUTRF-serratus_M_contig891 265394..265399 +
1690964379.9368076-UTR-F-serratus_M_contig891:265393..2653991690964379.9368076-UTR-F-serratus_M_contig891:265393..265399Fucus serratus maleUTRF-serratus_M_contig891 265394..265399 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932599.3231661-CDS-F-serratus_M_contig891:265399..2654561622932599.3231661-CDS-F-serratus_M_contig891:265399..265456Fucus serratus maleCDSF-serratus_M_contig891 265400..265456 +
1690964379.9506018-CDS-F-serratus_M_contig891:265399..2654561690964379.9506018-CDS-F-serratus_M_contig891:265399..265456Fucus serratus maleCDSF-serratus_M_contig891 265400..265456 +
1622932599.341752-CDS-F-serratus_M_contig891:266208..2663371622932599.341752-CDS-F-serratus_M_contig891:266208..266337Fucus serratus maleCDSF-serratus_M_contig891 266209..266337 +
1690964379.9594343-CDS-F-serratus_M_contig891:266208..2663371690964379.9594343-CDS-F-serratus_M_contig891:266208..266337Fucus serratus maleCDSF-serratus_M_contig891 266209..266337 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig891.20288.1

>prot_F-serratus_M_contig891.20288.1 ID=prot_F-serratus_M_contig891.20288.1|Name=mRNA_F-serratus_M_contig891.20288.1|organism=Fucus serratus male|type=polypeptide|length=62bp
MVMRSLPRAGGGHDDDHPHLVFDTPTKGPFTKTQAGVVVGGGVFLAIAIV
IGAVSHQQIKHG
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mRNA from alignment at F-serratus_M_contig891:265394..266337+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig891.20288.1 ID=mRNA_F-serratus_M_contig891.20288.1|Name=mRNA_F-serratus_M_contig891.20288.1|organism=Fucus serratus male|type=mRNA|length=944bp|location=Sequence derived from alignment at F-serratus_M_contig891:265394..266337+ (Fucus serratus male)
AGGACAATGGTCATGCGATCCCTGCCCCGCGCTGGAGGCGGGCACGATGA
CGACCACCCCCACGTAAGCCTTGGGACCATACATACATACGCTTCGTCAT
GCACCGTACCTGGTTCCAGTTTTGGTGGCCGTTGTTGCTGTTGTCACTTA
TTTATCTTTCAGGGTATTGGTTGCTCAACCCAAGGTAGGTACGTACACGA
CCGAGGGCAATCCAGCACCTGGCCTGCTGGCAAGCTAAAGCGATGTCATA
GCAGCATGTGTGATACTTGTCTATTAATGAGTCACTATAATAGTTTTGTC
TTTTGACGTAGTGTCCCATTTGCTCCCGTTTTTTTCTTTTTTTTTTTACC
AATTTTCATCTAACCATACGTCTCGCTGAGCGGCTTCTGCGCCTACGTAG
GAAGGCAGTCTGTTACGAGTATCACGGGCGTTGCCCTCGGCTCAAGGCTC
GTTCCTTTCCCTAGATCGTACACCGGTGATGGTCGACTTTTCCCTTCTGA
TGTTTGTCGAAGGAGCGTGGATCAAGTTTGGCACACTCTCGCCTCGTCGC
CCCGTCGCCCGGATGGAACACCCTGAATCCGAGTTAACATTTCATACTTG
TGTATAACAGCAGTTGTGTATAACAGCACGCCATGCGGCGGCCAATGCAA
AACGCCTTTTCCCTCCTTGAGCGTCGGAAGAAAAGACTAGCAGTACCCTG
CGCTGCTCTCCGCTCGCGAGAGAACTGGAGTGCGCGGCTTCTCGCCATTA
CACACAGCACGCGTTGCTTTCGTCCCCTGCACTATTTTGTGTCTCATCAT
CCCTCTTGTATTTAGTTGGTCTTCGACACCCCGACGAAGGGACCCTTCAC
GAAGACGCAAGCGGGTGTTGTGGTTGGGGGCGGAGTCTTCTTGGCCATCG
CCATCGTGATCGGCGCCGTCAGTCACCAGCAGATCAAGCACGGT
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Coding sequence (CDS) from alignment at F-serratus_M_contig891:265394..266337+

>mRNA_F-serratus_M_contig891.20288.1 ID=mRNA_F-serratus_M_contig891.20288.1|Name=mRNA_F-serratus_M_contig891.20288.1|organism=Fucus serratus male|type=CDS|length=372bp|location=Sequence derived from alignment at F-serratus_M_contig891:265394..266337+ (Fucus serratus male)
ATGGTCATGCGATCCCTGCCCCGCGCTGGAGGCGGGCACGATGACGACCA
CCCCCACATGGTCATGCGATCCCTGCCCCGCGCTGGAGGCGGGCACGATG
ACGACCACCCCCACTTGGTCTTCGACACCCCGACGAAGGGACCCTTCACG
AAGACGCAAGCGGGTGTTGTGGTTGGGGGCGGAGTCTTCTTGGCCATCGC
CATCGTGATCGGCGCCGTCAGTCACCAGCAGATCAAGCACGGTTTGGTCT
TCGACACCCCGACGAAGGGACCCTTCACGAAGACGCAAGCGGGTGTTGTG
GTTGGGGGCGGAGTCTTCTTGGCCATCGCCATCGTGATCGGCGCCGTCAG
TCACCAGCAGATCAAGCACGGT
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