mRNA_F-serratus_M_contig891.20279.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_F-serratus_M_contig891.20279.1
Unique Name	mRNA_F-serratus_M_contig891.20279.1
Type	mRNA
Organism	Fucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))

Homology

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BLAST of mRNA_F-serratus_M_contig891.20279.1 vs. uniprot
Match: D8LHI4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LHI4_ECTSI)

HSP 1 Score: 136 bits (342), Expect = 8.920e-31
Identity = 70/130 (53.85%), Postives = 84/130 (64.62%), Query Frame = 3

Query:    3 GMLGFKRGAILVSLCWVAILVHIIDRKWWQAAVWALFSSILTAVGIIHVQMG------------------DGGIVASTTCWGHGNWLQYFIAYLMMGVVFIGIEALRRAAIGDLDASIECSEADADFKGW 338
            G+LG KRGAILVSLCWVA+LVHIIDRKWWQA+VWA+ S+  TAVGIIHV +                   D  +V + +CW H +   Y  AYLMM VVF+ IE +RRA +G+LD  I   EADA FK W
Sbjct:  436 GILGLKRGAILVSLCWVAMLVHIIDRKWWQASVWAVISACFTAVGIIHVPVAGFDDFTSTVGDLCTPVTDDLEVVTTASCWDHADQWHYMTAYLMMAVVFVAIEGVRRAGVGNLDEPILTEEADA-FKDW 564

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BLAST of mRNA_F-serratus_M_contig891.20279.1 vs. uniprot
Match: A0A1Z5K0X1_FISSO (Putative MFS transporter, AGZA family, xanthine/uracil permease n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K0X1_FISSO)

HSP 1 Score: 87.4 bits (215), Expect = 1.700e-14
Identity = 50/125 (40.00%), Postives = 72/125 (57.60%), Query Frame = 3

Query:    3 GMLGFKRGAILVSLCWVAILVHIIDRKWWQAAVWALFSSILTAVGIIHVQMGDGGIV-----------ASTTCWGHGNWLQYFIAYLMMGVVFIGIEALRRAAIGD-LDASIECSEADADFKGWL 341
            G+L +KRGA+LVS  WVAILV +IDR+W +A  W+L ++  +  GIIH  M + G+            A  +CW HG    YF+AYLM   +F+ IE  RR+ + + L   +E   +D +FK W 
Sbjct:  540 GILAWKRGALLVSFVWVAILVSVIDRQWNKATFWSLLAAGFSLFGIIH--MPEAGLEKLSEPFWEQCPAGGSCWEHGEQWMYFVAYLMFAGIFVLIELARRSGLDEQLLPGLEDPTSD-EFKDWF 661

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BLAST of mRNA_F-serratus_M_contig891.20279.1 vs. uniprot
Match: A0A7S2UIB7_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UIB7_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 1.110e-13
Identity = 44/129 (34.11%), Postives = 63/129 (48.84%), Query Frame = 3

Query:    3 GMLGFKRGAILVSLCWVAILVHIIDRKWWQAAVWALFSSILTAVGIIHVQ----------MGDGGIVASTTCWGHGNWLQYFIAYLMMGVVFIGIEALRRAAIGDLDASIECSEADADFKGWLSKKENI 359
            G+L +KRGA+LVS  WVA+LV +IDRKW +AAVW+   ++    GIIHV           + +  + +   CW       +F+AYLM+   F  IE  R   + D        E    F  W +  + I
Sbjct:   58 GLLAWKRGALLVSFVWVAMLVSVIDRKWKKAAVWSTMGALFALFGIIHVPEAGFANFATPVWEQCVSSPGNCWDFAEQYMFFVAYLMLTGTFALIEVARSMGLDDTLLPAIVDEEGVSFGDWYANADKI 186

The following BLAST results are available for this feature:

BLAST of mRNA_F-serratus_M_contig891.20279.1 vs. uniprot

BLAST of mRNA_F-serratus_M_contig891.20279.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 3


Match Name	E-value	Identity	Description
D8LHI4_ECTSI	8.920e-31	53.85	Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2...	[more]
A0A1Z5K0X1_FISSO	1.700e-14	40.00	Putative MFS transporter, AGZA family, xanthine/ur...	[more]
A0A7S2UIB7_9STRA	1.110e-13	34.11	Hypothetical protein n=1 Tax=Attheya septentrional...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
F-serratus_M_contig891	contig	F-serratus_M_contig891:88299..90954 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90	2022-09-19
OGS1.0 of Fucus serratus male	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	135.2
Seed ortholog evalue	2.3e-29
Seed eggNOG ortholog	2880.D8LHI4
Hectar predicted targeting category	signal anchor
EggNOG free text desc.	purine nucleobase transmembrane transporter activity
EggNOG OGs	2QRYA@2759,COG2252@1
COG Functional cat.	S
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
Exons	4
Model size	1515
Cds size	405
Stop	1
Start	1

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_F-serratus_M_contig891.20279.1	prot_F-serratus_M_contig891.20279.1	Fucus serratus male	polypeptide	F-serratus_M_contig891 88304..89849 +

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622932597.2829273-UTR-F-serratus_M_contig891:88298..88303	1622932597.2829273-UTR-F-serratus_M_contig891:88298..88303	Fucus serratus male	UTR	F-serratus_M_contig891 88299..88303 +
1690964378.9411676-UTR-F-serratus_M_contig891:88298..88303	1690964378.9411676-UTR-F-serratus_M_contig891:88298..88303	Fucus serratus male	UTR	F-serratus_M_contig891 88299..88303 +
1622932597.3712742-UTR-F-serratus_M_contig891:89849..90954	1622932597.3712742-UTR-F-serratus_M_contig891:89849..90954	Fucus serratus male	UTR	F-serratus_M_contig891 89850..90954 +
1690964378.9878635-UTR-F-serratus_M_contig891:89849..90954	1690964378.9878635-UTR-F-serratus_M_contig891:89849..90954	Fucus serratus male	UTR	F-serratus_M_contig891 89850..90954 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622932597.2974176-CDS-F-serratus_M_contig891:88303..88450	1622932597.2974176-CDS-F-serratus_M_contig891:88303..88450	Fucus serratus male	CDS	F-serratus_M_contig891 88304..88450 +
1690964378.9517558-CDS-F-serratus_M_contig891:88303..88450	1690964378.9517558-CDS-F-serratus_M_contig891:88303..88450	Fucus serratus male	CDS	F-serratus_M_contig891 88304..88450 +
1622932597.3201926-CDS-F-serratus_M_contig891:88870..88943	1622932597.3201926-CDS-F-serratus_M_contig891:88870..88943	Fucus serratus male	CDS	F-serratus_M_contig891 88871..88943 +
1690964378.960683-CDS-F-serratus_M_contig891:88870..88943	1690964378.960683-CDS-F-serratus_M_contig891:88870..88943	Fucus serratus male	CDS	F-serratus_M_contig891 88871..88943 +
1622932597.3334637-CDS-F-serratus_M_contig891:89348..89460	1622932597.3334637-CDS-F-serratus_M_contig891:89348..89460	Fucus serratus male	CDS	F-serratus_M_contig891 89349..89460 +
1690964378.9696903-CDS-F-serratus_M_contig891:89348..89460	1690964378.9696903-CDS-F-serratus_M_contig891:89348..89460	Fucus serratus male	CDS	F-serratus_M_contig891 89349..89460 +
1622932597.3532474-CDS-F-serratus_M_contig891:89776..89849	1622932597.3532474-CDS-F-serratus_M_contig891:89776..89849	Fucus serratus male	CDS	F-serratus_M_contig891 89777..89849 +
1690964378.9786048-CDS-F-serratus_M_contig891:89776..89849	1690964378.9786048-CDS-F-serratus_M_contig891:89776..89849	Fucus serratus male	CDS	F-serratus_M_contig891 89777..89849 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at F-serratus_M_contig891:88299..90954+
coding sequence from alignment at F-serratus_M_contig891:88299..90954+

protein sequence of mRNA_F-serratus_M_contig891.20279.1

>prot_F-serratus_M_contig891.20279.1 ID=prot_F-serratus_M_contig891.20279.1|Name=mRNA_F-serratus_M_contig891.20279.1|organism=Fucus serratus male|type=polypeptide|length=135bp
MLGFKRGAILVSLCWVAILVHIIDRKWWQAAVWALFSSILTAVGIIHVQM
GDGGIVASTTCWGHGNWLQYFIAYLMMGVVFIGIEALRRAAIGDLDASIE
CSEADADFKGWLSKKENIENLAEKIVEAKKPKHE*

mRNA from alignment at F-serratus_M_contig891:88299..90954+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_F-serratus_M_contig891.20279.1 ID=mRNA_F-serratus_M_contig891.20279.1|Name=mRNA_F-serratus_M_contig891.20279.1|organism=Fucus serratus male|type=mRNA|length=2656bp|location=Sequence derived from alignment at F-serratus_M_contig891:88299..90954+ (Fucus serratus male)
GGGGCATGCTCGGCTTCAAGCGCGGGGCCATCCTCGTGTCTCTCTGCTGG
GTCGCCATTCTGGTGCACATCATCGACCGCAAGTGGTGGCAGGCGGCCGT
CTGGGCTCTCTTCTCGTCCATCCTTACCGCGGTTGGCATTATCCACGTGC
AGGTGAGGCAGGCGTCTTCTCACGCTTAGACGCCGCTGCAAAACGTGCCG
CTGAAACCTCGGTTTTCTCTCGCCTAGATTCCAACGAACGCTTACTACTT
GGTGCGACAGCAGACAGCCTATTATTAGCACCCCCAACCCTATCTCACTG
CCTTACAACGCAATCGTATAGGCGACTGGGTTCGACGTCTTCACCAAAAC
AGCAGGGATCCTTTGCTCGTCTGTCGTGCGTCTGTTCAGACTAAAAACAA
AACTGTGCGTTTATTCTGCATGGCTAGAGTGATGTTGCATCTGTAAAGCA
GCGGTATCACGTTCATAGGCCATCGCGTGTACGTACCTGGTTAACGTCGC
GTGCACTAGTGCGAGTGCCAAGTCCGTATGAATTTTTTATTTATGTGACG
CTGCGTGCCCACTTTGCTTCAGATGGGGGACGGCGGCATCGTAGCCAGCA
CGACCTGCTGGGGACACGGCAACTGGTTGCAATACTTTATCGCATGTGAG
TCGACTGCCGGTTCTTAAAGCGTGATGGCATCATCCTTCTAATGAGTTGA
ACGAGTGGCGTGAAACGCTGGTGTTGCTCTGCGACTAGAATCGGTTTTCA
GGTCGACCAAGTCCTAGTACAACATGAAGTCGAGTTGGCACACGGAGATT
AACAGACGGTAAGAAATATTTCAAAACCTGCTCTACTTCGTGCTCCGGAG
TATAATACTTTCGATCTGTCGTGAACGACTTGATGGCTGCTCCAGAACGT
TCTAATGGAATCTGAAACTCGTCGTCACCACCACCCGTCGATCAATCAAA
CCACCTCAAGCCCTCAAAAATACGTCGCACTCGTTTCCTCATCAAACACA
TCGATCGCCCGAATCACAATCCCTGGCGCACCAACAATCCGCATATCCAG
ACCTGATGATGGGAGTAGTTTTCATCGGGATCGAGGCCCTCAGGCGTGCG
GCTATCGGTGACCTCGATGCATCGATCGAGTGTTCTGAGGCAGATGCCGA
TTTCAAGGGCTGGTGAGTAAACATATAACACTACAGACACTTGGCGTAGG
AATGGGTCGGAAGAGGTCTGACGAGAAGCATTCCCAAGTAAGATCAGTCA
ATATCGTACCGGTAGTCAAGTGAATGCCCATGATGCTCTGTTTACCCCGG
GTCAAAGAGAACTGTATGTAGAGGACGTTTTCCGAGCTCTTTTTCATTTG
GGAAGATAAGGTCCAGTGGCCATCACAAGAGATATCATTCCACAACCGTG
TAGGAACGCCTCTGGACAACGTGCTGACGCCCCACCCTCCATGGAACTCG
TACTCCGTCGTCATGTGTTACTTGACAGGCTTAGCAAGAAGGAAAATATA
GAAAATCTGGCCGAGAAGATTGTTGAAGCGAAGAAGCCCAAACATGAGTA
ATCTGAGATCGCAGCCATCACGAACACCATCGCATGGCATTTGGCTCTGA
TTTCAACCATTCTTTCAATACCAGAGCGTGATTCTTACTAAAGAAACCCA
GAAGCTTTACCTTCTATGGGCATCACCAGAAGAGGCGTTAAATGACGACG
GCCACGACGGGTTTACGGCATTAAACGTCTAATCTGGACAGAAAGTACCC
AACTTGGCATGAGGCTTCAAACGCCAATAAGACTGTACCCTTCGTCTGAA
TTATAATTGCCGGTCATAAGTGGATAAAAGCGTCACTTCTTTGAGCCTCA
TCTGCGAGCGTACTATATTATGGTGTACCCGACTTTAAAATCTGAAAAAG
GGAGGTCTTACTTGAGGCAGCAATTACTAGAGCAAGATCTATGAGGTAAT
GTTGGCACTACCATTCCCGCTTTCTCATACTGTATTAATGTTGCTGTGGA
TGCTATGTTCTTGAATGTACAATAAGGTCGGACGAGGTGAAAATATCCCA
CAAAATCGATGTATTTCGAACCAACCTCAATAGGAACCTGTTCGAGTACT
GATGAAGAGTGACCAACGTATGTGCGTGGGTATGGTAGTCTCTACGGAGG
ATGCATCTTGTATAAAAAGCCCCCATGTAGACGCTGCCTTCGGTTTACAG
GTGGAAGTTCCACCTGGTTCTGCCGTCGGGCGCGCCAGGGATTTCGTATC
TATCTGCAGTCGGTTCTCGAGTCAGTGTCTTTGCATATTGACATGGTATA
CTCAAAATCAGCCATGTGCAGCTGGTGATCTAGCATTGCTTACTGGAGAT
ATGCTTTGTTGAAATTGATAAGaGGGTGCTTAATACATGAAGCTGAAGAG
CATGTTTCTACCAAACCCCGGGTTGGATAAGGCTTTGCTGAATGAAGTAG
TGAAGTGTGCACAACGTCGGCAGAAACGTATTGGAATCACCATGGAATCG
AGAAGATCGCGAATCGTTTCTGGATGATTTTCAAAGCATATGCATGCCTT
TATGTTCAGGGAGTACTTCATAAGCTTGGAGGCCCGGGGTATGCTGCTGG
AGTACTCGGGGTAAAACCGCATGCTGAGGATCTATTATGTACAGGGAAGC
GTAACC

Coding sequence (CDS) from alignment at F-serratus_M_contig891:88299..90954+

>mRNA_F-serratus_M_contig891.20279.1 ID=mRNA_F-serratus_M_contig891.20279.1|Name=mRNA_F-serratus_M_contig891.20279.1|organism=Fucus serratus male|type=CDS|length=810bp|location=Sequence derived from alignment at F-serratus_M_contig891:88299..90954+ (Fucus serratus male)
ATGCTCGGCTTCAAGCGCGGGGCCATCCTCGTGTCTCTCTGCTGGGTCGC
CATTCTGGTGCACATCATCGACCGCAAGTGGTGGCAGGCGGCCGTCTGGG
CTCTCTTCTCGTCCATCCTTACCGCGGTTGGCATTATCCACGTGCAGATG
CTCGGCTTCAAGCGCGGGGCCATCCTCGTGTCTCTCTGCTGGGTCGCCAT
TCTGGTGCACATCATCGACCGCAAGTGGTGGCAGGCGGCCGTCTGGGCTC
TCTTCTCGTCCATCCTTACCGCGGTTGGCATTATCCACGTGCAGATGGGG
GACGGCGGCATCGTAGCCAGCACGACCTGCTGGGGACACGGCAACTGGTT
GCAATACTTTATCGCATATGGGGGACGGCGGCATCGTAGCCAGCACGACC
TGCTGGGGACACGGCAACTGGTTGCAATACTTTATCGCATACCTGATGAT
GGGAGTAGTTTTCATCGGGATCGAGGCCCTCAGGCGTGCGGCTATCGGTG
ACCTCGATGCATCGATCGAGTGTTCTGAGGCAGATGCCGATTTCAAGGGC
TGACCTGATGATGGGAGTAGTTTTCATCGGGATCGAGGCCCTCAGGCGTG
CGGCTATCGGTGACCTCGATGCATCGATCGAGTGTTCTGAGGCAGATGCC
GATTTCAAGGGCTGGCTTAGCAAGAAGGAAAATATAGAAAATCTGGCCGA
GAAGATTGTTGAAGCGAAGAAGCCCAAACATGAGTAAGCTTAGCAAGAAG
GAAAATATAGAAAATCTGGCCGAGAAGATTGTTGAAGCGAAGAAGCCCAA
ACATGAGTAA