mRNA_F-serratus_M_contig89.20263.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig89.20263.1
Unique NamemRNA_F-serratus_M_contig89.20263.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig89.20263.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig89contigF-serratus_M_contig89:73074..74303 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size260
Cds size195
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig89.20263.1prot_F-serratus_M_contig89.20263.1Fucus serratus malepolypeptideF-serratus_M_contig89 73138..74303 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932583.534856-UTR-F-serratus_M_contig89:73073..731371622932583.534856-UTR-F-serratus_M_contig89:73073..73137Fucus serratus maleUTRF-serratus_M_contig89 73074..73137 -
1690964377.4320052-UTR-F-serratus_M_contig89:73073..731371690964377.4320052-UTR-F-serratus_M_contig89:73073..73137Fucus serratus maleUTRF-serratus_M_contig89 73074..73137 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932583.5573516-CDS-F-serratus_M_contig89:73137..731901622932583.5573516-CDS-F-serratus_M_contig89:73137..73190Fucus serratus maleCDSF-serratus_M_contig89 73138..73190 -
1690964377.445295-CDS-F-serratus_M_contig89:73137..731901690964377.445295-CDS-F-serratus_M_contig89:73137..73190Fucus serratus maleCDSF-serratus_M_contig89 73138..73190 -
1622932583.5760446-CDS-F-serratus_M_contig89:74161..743031622932583.5760446-CDS-F-serratus_M_contig89:74161..74303Fucus serratus maleCDSF-serratus_M_contig89 74162..74303 -
1690964377.458946-CDS-F-serratus_M_contig89:74161..743031690964377.458946-CDS-F-serratus_M_contig89:74161..74303Fucus serratus maleCDSF-serratus_M_contig89 74162..74303 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig89.20263.1

>prot_F-serratus_M_contig89.20263.1 ID=prot_F-serratus_M_contig89.20263.1|Name=mRNA_F-serratus_M_contig89.20263.1|organism=Fucus serratus male|type=polypeptide|length=65bp
PPERHFFFKRSVSPTERSCASLRYHSTQQEPLRSFTCCLQVISDLLPEFG
GSSCHGHNERRGKK*
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mRNA from alignment at F-serratus_M_contig89:73074..74303-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig89.20263.1 ID=mRNA_F-serratus_M_contig89.20263.1|Name=mRNA_F-serratus_M_contig89.20263.1|organism=Fucus serratus male|type=mRNA|length=1230bp|location=Sequence derived from alignment at F-serratus_M_contig89:73074..74303- (Fucus serratus male)
CCCCCTGAGCGCCACTTTTTTTTCAAACGATCTGTCTCTCCTACCGAACG
ATCCTGTGCATCTCTGAGATACCATTCCACACAACAAGAGCCCCTGCGTT
CTTTCACATGCTGCTTACAGGTCATAAGTGATTTGCTTCCAGGTGAGCTA
GATCTTAGTTTTTACAGTCCTCAAACAACATGCTAGCTCGAGCCTAATAT
ATATTATGTTGGTTGTCACATTCAGCGTAATTAATGTTGTCGGAGCCGGT
CGACCCCGGTAGCTCAGTAGGCACCTCGTAACCTTCTGACACGTTGGGAC
GTGAGTTCGATTCCGGCAAACGGGATCTTTCTCACTAAAAACTAAAAAAC
CAAAATAAAAATGCCCAACGGGTGGAGAACGATTAATTCGTTAGTACACA
AAATTCGACTTCACGGTCGATGAGGGAAAGGAATGGCTGAATCCTTCTCG
CGACAAAAATCAAGGCACGCACCGCAGAAGGAAGGTGGATGAAAAATCCT
GTGTGACCTTCCTCCTGTGTGACCCCGGCTGGTACGTCCAACGAACTTGA
TGTCCAGAATGGATGGGAAGAAAACACAAAAACAACCCTAAAAAGCTACT
TGTCACAGTGACCAATCCCGCTCGTTGTCGTCGTCTGCTGAATAGGGAAG
AAACAACAAAAAGAGAAAGCCTGGAAGCGGATCAAAGCTCGACATCCAAC
GAACAGTTAGAAGTAGTAGTGTTCTGCCCATCCACGAATTATTCCCGCCA
ACGTGAAAACGGCCCAATCACCCTCGCACTAAGTACTTCATGCTTTTCGT
ATCTAACCCTCTTTCTCGAGAATTAGGACTTCGTACTTTACAAATCAACG
GAAATGAACCCTAGGCCAGGCACTCGTCGTCGTATGTATGTATGATACCA
AAATCCACGAAAAGAGGTAATTACAGTAAGGTTTGACGATCCAGATGGAA
TGAAAGTCAAGCCAAAAAACAACAGATGTCACAGCACAAAAACATTCCAC
ATTTTACACAGTGGGACTTCACCTTATCCCTGTTGATGTGGTGATAACGA
GAATCGACTAACAGCAGGGGTTTTGCTACTCGCCTCGATCGATCTGCTGT
TGTTGCACCTCAGAATTCGGAGGTAGTTCCTGCCATGGACACAACGAACG
ACGAGGGAAAAAATAATGAGACAGTGATCGACGCTCAGGACAGCAAAGAA
GAGGAGAGTGACAATGAGAGCGAGAGCGAG
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Coding sequence (CDS) from alignment at F-serratus_M_contig89:73074..74303-

>mRNA_F-serratus_M_contig89.20263.1 ID=mRNA_F-serratus_M_contig89.20263.1|Name=mRNA_F-serratus_M_contig89.20263.1|organism=Fucus serratus male|type=CDS|length=390bp|location=Sequence derived from alignment at F-serratus_M_contig89:73074..74303- (Fucus serratus male)
CCCCCTGAGCGCCACTTTTTTTTCAAACGATCTGTCTCTCCTACCGAACG
ATCCTGTGCATCTCTGAGATACCATTCCACACAACAAGAGCCCCTGCGTT
CTTTCACATGCTGCTTACAGGTCATAAGTGATTTGCTTCCAGCCCCCTGA
GCGCCACTTTTTTTTCAAACGATCTGTCTCTCCTACCGAACGATCCTGTG
CATCTCTGAGATACCATTCCACACAACAAGAGCCCCTGCGTTCTTTCACA
TGCTGCTTACAGGTCATAAGTGATTTGCTTCCAGAATTCGGAGGTAGTTC
CTGCCATGGACACAACGAACGACGAGGGAAAAAATAAAATTCGGAGGTAG
TTCCTGCCATGGACACAACGAACGACGAGGGAAAAAATAA
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