mRNA_F-serratus_M_contig888.20254.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig888.20254.1 vs. uniprot
Match: D7FIU4_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIU4_ECTSI) HSP 1 Score: 239 bits (610), Expect = 6.850e-76 Identity = 109/156 (69.87%), Postives = 131/156 (83.97%), Query Frame = 2
Query: 2 DNDDIMYSPTSVTGKWLLASDLHILRGSIFYCRGASIGGDCDELRIQSTGSTDFNEVRGHGGSLYFENTLVTSWDTPNKSPTDDYEDGRSFINCVSEYESDETCDGQPKNDYGECRMDIIDSEMGYLGWFDSESYGLTWKVRGFCADKSNPEVFDT 469
D+ + + SPTSVT KWLL S+L++ G+IFYC G+ GGDCDELRIQSTG D+ EVRGHGGS+YF +T+VTSWDTPNK P + YE GRSF+NCVSE + ETCDG+ KND GECRMDII+SEMGY+G+FD+ESYGLTWKVRGFC D SNP+VF+T
Sbjct: 4 DSGNKITSPTSVTKKWLLESELYVTDGAIFYCIGSEEGGDCDELRIQSTGPDDWYEVRGHGGSMYFSHTVVTSWDTPNKKPQETYEGGRSFLNCVSEKLTGETCDGKAKNDEGECRMDIINSEMGYMGFFDAESYGLTWKVRGFCKDLSNPDVFET 159
BLAST of mRNA_F-serratus_M_contig888.20254.1 vs. uniprot
Match: D8LRM4_ECTSI (Mannuronan C-5-epimerase N-terminal n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRM4_ECTSI) HSP 1 Score: 238 bits (607), Expect = 1.170e-73 Identity = 107/156 (68.59%), Postives = 131/156 (83.97%), Query Frame = 2
Query: 2 DNDDIMYSPTSVTGKWLLASDLHILRGSIFYCRGASIGGDCDELRIQSTGSTDFNEVRGHGGSLYFENTLVTSWDTPNKSPTDDYEDGRSFINCVSEYESDETCDGQPKNDYGECRMDIIDSEMGYLGWFDSESYGLTWKVRGFCADKSNPEVFDT 469
D+ + + +P ++ KWLL ++LHI G++FYCRG+SIGGDCDELRIQSTG TDF+EVR HGGS+YFE+T+VTSWDTPNK+P Y GRSF+NCVSE + E C GQ +N+ GECRMDII+SE+GYLG+FDSESYGLTWKVRGFC D SNP+VFDT
Sbjct: 113 DSYNTVLNPKVLSNKWLLTAELHITGGAVFYCRGSSIGGDCDELRIQSTGPTDFHEVRAHGGSMYFESTIVTSWDTPNKTPQATYVGGRSFLNCVSEKLTGEVCVGQAQNEMGECRMDIINSEIGYLGYFDSESYGLTWKVRGFCKDLSNPDVFDT 268
BLAST of mRNA_F-serratus_M_contig888.20254.1 vs. uniprot
Match: A0A6H5JGU8_9PHAE (MEP1 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGU8_9PHAE) HSP 1 Score: 231 bits (588), Expect = 1.950e-71 Identity = 107/158 (67.72%), Postives = 126/158 (79.75%), Query Frame = 2
Query: 23 SPTSVTGKWLLASDLHILRGSIFYCRGASIGGDCDELRIQSTGSTDFNEVRGHGGSLYFENTLVTSWDTPNKSPTDDYEDGRSFINCVSEYESDETCDGQPKNDYGECRMDIIDSEMGYLGWFDSESYGLTWKVR---------GFCADKSNPEVFDT 469
+PTSVT KWLL ++L++ G+IFYC G+ GGDCDELRIQSTG D+ EVRGHGGS+YF +T+VTSWDTPNK P + YE GRSF+NCVSE + ETCDG KND GECRMDII+SEMGY+G+FDSESYGLTWKVR GFC D SNP+VF+T
Sbjct: 56 APTSVTKKWLLEAELYVTNGAIFYCIGSEEGGDCDELRIQSTGPDDWYEVRGHGGSMYFSHTVVTSWDTPNKQPQETYEGGRSFLNCVSEKLTGETCDGMAKNDMGECRMDIINSEMGYMGFFDSESYGLTWKVRRQAGRGVVRGFCKDLSNPDVFET 213
BLAST of mRNA_F-serratus_M_contig888.20254.1 vs. uniprot
Match: A0A6H5KWQ2_9PHAE (MEP2 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWQ2_9PHAE) HSP 1 Score: 226 bits (577), Expect = 4.650e-71 Identity = 102/155 (65.81%), Postives = 124/155 (80.00%), Query Frame = 2
Query: 26 PTSVTGKWLLASDLHILRGSIFYCRGASIGGDCDELRIQSTGSTDFNEVRGHGGSLYFENTLVTSWDTPNKSPTDDYEDGRSFINCVSEYESDETCDGQPKNDYGECRMDIIDSEMGYLGWFDSESYGLTWK--------VRGFCADKSNPEVFD 466
P+ +T WLLA++L+I G +FYC+G S GGDC++LRIQSTGS DF+EVRGHGGSLYFE+T+VTSWDTPNK P + YE GRSF+NCVSE + + C+G KN+ GECRMDII+SE+ YLG+FDSESYG+TWK VRGFC D SNPEVFD
Sbjct: 33 PSGITNNWLLAAELYITGGGVFYCKGTSAGGDCNQLRIQSTGSDDFHEVRGHGGSLYFEDTIVTSWDTPNKEPQETYEGGRSFLNCVSEKLTGDDCEGNAKNEMGECRMDIINSEIAYLGYFDSESYGMTWKARLTRGFPVRGFCKDLSNPEVFD 187
BLAST of mRNA_F-serratus_M_contig888.20254.1 vs. uniprot
Match: D8LC73_ECTSI (Mannuronan C-5-epimerase 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC73_ECTSI) HSP 1 Score: 233 bits (594), Expect = 4.840e-69 Identity = 101/147 (68.71%), Postives = 125/147 (85.03%), Query Frame = 2
Query: 26 PTSVTGKWLLASDLHILRGSIFYCRGASIGGDCDELRIQSTGSTDFNEVRGHGGSLYFENTLVTSWDTPNKSPTDDYEDGRSFINCVSEYESDETCDGQPKNDYGECRMDIIDSEMGYLGWFDSESYGLTWKVRGFCADKSNPEVFD 466
P+ +T WLLA++L+I G +FYC+G S GGDC++LRIQSTGS DF+EVRGHGGSLYFE+T+VTSWDTPNK P + YE+GRSF+NCVSE + + C+G KN+ GECRMDII+SE+ YLG+FDSESYG+TWKVRGFC D SNPEVF+
Sbjct: 484 PSGITNNWLLAAELYITGGGVFYCKGTSAGGDCNQLRIQSTGSDDFHEVRGHGGSLYFEDTIVTSWDTPNKEPQETYENGRSFLNCVSEKLTGDDCEGNAKNEMGECRMDIINSEIAYLGYFDSESYGMTWKVRGFCKDLSNPEVFE 630
BLAST of mRNA_F-serratus_M_contig888.20254.1 vs. uniprot
Match: D7FRR8_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRR8_ECTSI) HSP 1 Score: 202 bits (513), Expect = 2.050e-60 Identity = 93/155 (60.00%), Postives = 118/155 (76.13%), Query Frame = 2
Query: 5 NDDIMYSPTSVTGKWLLASDLHILRGSIFYCRGASIGGDCDELRIQSTGSTDFNEVRGHGGSLYFENTLVTSWDTPNKSPTDDYEDGRSFINCVSEY-ESDETCDGQPKNDYGECRMDIIDSEMGYLGWFDSESYGLTWKVRGFCADKSNPEVFD 466
ND + + T+ TGKWLL +DL + G+ YCRG +GG+C ELRI+ST +DF E+RGHGG+LYFE+T+VTSWD + P + Y+DGRSFI CVSE ++TC N+ GECRMDIIDSEMGYLG+ SE+YG+TWKVRGFC+D SNP+VFD
Sbjct: 39 NDRVDETATTTTGKWLLTADLFVTGGATLYCRGKGVGGNCAELRIRSTSGSDFFEIRGHGGNLYFEDTIVTSWDVDGRKPQETYKDGRSFIRCVSEVLTGEDTC---AINNMGECRMDIIDSEMGYLGYDASEAYGITWKVRGFCSDLSNPDVFD 190
BLAST of mRNA_F-serratus_M_contig888.20254.1 vs. uniprot
Match: D7FXE5_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXE5_ECTSI) HSP 1 Score: 174 bits (441), Expect = 3.980e-50 Identity = 87/148 (58.78%), Postives = 103/148 (69.59%), Query Frame = 2
Query: 29 TSVTGKWLLASDLHILRGSIFYCRGASIGGDCDELRIQSTGSTDFNEVRGHGGSLYFENTLVTSWDTPNKSPTDDYEDGRSFINCVSEY--ESDETCDGQPKNDYGECRMDIIDSEMGYLGWFDSESYGLTWKVRGFCADKSNPEVFD 466
TS TG WLL +L++ G G+ GGD DELR+ ST T N +R HGGSL F +T V SWDT SP +D DGRS+I+ +SE + DETC+G KN GE RMDI SE+GYLG++DSESYGLTWKVRGFC DKSNPEVFD
Sbjct: 97 TSATGTWLLTEELYVEDGITLEVYGSEAGGDADELRLLSTNETFIN-LRAHGGSLDFVSTKVFSWDTSTNSPDEDETDGRSYISAISEIITDEDETCEGNAKNTMGEARMDIESSEIGYLGYWDSESYGLTWKVRGFCEDKSNPEVFD 243
BLAST of mRNA_F-serratus_M_contig888.20254.1 vs. uniprot
Match: D7G339_ECTSI (Mannuronan C-5-epimerase n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G339_ECTSI) HSP 1 Score: 174 bits (441), Expect = 3.290e-49 Identity = 87/148 (58.78%), Postives = 103/148 (69.59%), Query Frame = 2
Query: 29 TSVTGKWLLASDLHILRGSIFYCRGASIGGDCDELRIQSTGSTDFNEVRGHGGSLYFENTLVTSWDTPNKSPTDDYEDGRSFINCVSEY--ESDETCDGQPKNDYGECRMDIIDSEMGYLGWFDSESYGLTWKVRGFCADKSNPEVFD 466
TS TG WLL +L++ G G+ GGD DELR+ ST T N +R HGGSL F +T V SWDT SP +D DGRS+I+ +SE + DETC+G KN GE RMDI SE+GYLG++DSESYGLTWKVRGFC DKSNPEVFD
Sbjct: 97 TSATGTWLLTEELYVEDGITLKVYGSEAGGDADELRLLSTNETFIN-LRAHGGSLDFVSTKVFSWDTSTNSPDEDETDGRSYISAISEIITDEDETCEGNAKNTMGEARMDIESSEIGYLGYWDSESYGLTWKVRGFCEDKSNPEVFD 243
BLAST of mRNA_F-serratus_M_contig888.20254.1 vs. uniprot
Match: D7FWE8_ECTSI (Mannuronan C-5-epimerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FWE8_ECTSI) HSP 1 Score: 174 bits (440), Expect = 1.530e-47 Identity = 86/147 (58.50%), Postives = 100/147 (68.03%), Query Frame = 2
Query: 32 SVTGKWLLASDLHILRGSIFYCRGASIGGDCDELRIQSTGSTDFNEVRGHGGSLYFENTLVTSWDTPNKSPTDDYEDGRSFINCVSEYESDE--TCDGQPKNDYGECRMDIIDSEMGYLGWFDSESYGLTWKVRGFCADKSNPEVFD 466
S TG WLL S L IL G Y G S GGD D LRIQST DF E+RG GGSL F T VTSWDT +YE GRSFINCV++++ + +C G+ + GECRMDIIDS MG +GWFD+ESYGLTWKVRG C+D SN E+ D
Sbjct: 449 SPTGYWLLTSSLEILDGVTLYVHGTSAGGDADVLRIQST-DDDFWEIRGWGGSLSFLETTVTSWDTDKGEERTEYEGGRSFINCVTQFDDSDIWSCSGRSNKERGECRMDIIDSTMGNMGWFDAESYGLTWKVRGLCSDLSNVEIMD 594
BLAST of mRNA_F-serratus_M_contig888.20254.1 vs. uniprot
Match: A0A6H5JU98_9PHAE (MEP5a protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU98_9PHAE) HSP 1 Score: 164 bits (414), Expect = 1.020e-46 Identity = 83/145 (57.24%), Postives = 98/145 (67.59%), Query Frame = 2
Query: 38 TGKWLLASDLHILRGSIFYCRGASIGGDCDELRIQSTGSTDFNEVRGHGGSLYFENTLVTSWDTPNKSPTDDYEDGRSFINCVSEY--ESDETCDGQPKNDYGECRMDIIDSEMGYLGWFDSESYGLTWKVRGFCADKSNPEVFD 466
TG WLL +L++ G G GGD DELR+ ST T N +R HGGSL F T V SWDT SP +D DGRS+I+ +SE + DETC+G KN GE RMDI +SE+GYLG+ DSESYGLTWKVRGFC DKSNP +FD
Sbjct: 103 TGTWLLTEELYVEDGITLKVYGTGEGGDADELRLLSTTDTYIN-LRAHGGSLDFVGTKVFSWDTSTNSPDEDETDGRSYISAISEIITDEDETCEGNAKNTMGEARMDIENSEIGYLGFQDSESYGLTWKVRGFCKDKSNPGIFD 246 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig888.20254.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig888.20254.1 >prot_F-serratus_M_contig888.20254.1 ID=prot_F-serratus_M_contig888.20254.1|Name=mRNA_F-serratus_M_contig888.20254.1|organism=Fucus serratus male|type=polypeptide|length=151bp MYSPTSVTGKWLLASDLHILRGSIFYCRGASIGGDCDELRIQSTGSTDFNback to top mRNA from alignment at F-serratus_M_contig888:183485..183953+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig888.20254.1 ID=mRNA_F-serratus_M_contig888.20254.1|Name=mRNA_F-serratus_M_contig888.20254.1|organism=Fucus serratus male|type=mRNA|length=469bp|location=Sequence derived from alignment at F-serratus_M_contig888:183485..183953+ (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig888:183485..183953+ >mRNA_F-serratus_M_contig888.20254.1 ID=mRNA_F-serratus_M_contig888.20254.1|Name=mRNA_F-serratus_M_contig888.20254.1|organism=Fucus serratus male|type=CDS|length=906bp|location=Sequence derived from alignment at F-serratus_M_contig888:183485..183953+ (Fucus serratus male)back to top |