mRNA_F-serratus_M_contig888.20254.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig888.20254.1
Unique NamemRNA_F-serratus_M_contig888.20254.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig888.20254.1 vs. uniprot
Match: D7FIU4_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIU4_ECTSI)

HSP 1 Score: 239 bits (610), Expect = 6.850e-76
Identity = 109/156 (69.87%), Postives = 131/156 (83.97%), Query Frame = 2
Query:    2 DNDDIMYSPTSVTGKWLLASDLHILRGSIFYCRGASIGGDCDELRIQSTGSTDFNEVRGHGGSLYFENTLVTSWDTPNKSPTDDYEDGRSFINCVSEYESDETCDGQPKNDYGECRMDIIDSEMGYLGWFDSESYGLTWKVRGFCADKSNPEVFDT 469
            D+ + + SPTSVT KWLL S+L++  G+IFYC G+  GGDCDELRIQSTG  D+ EVRGHGGS+YF +T+VTSWDTPNK P + YE GRSF+NCVSE  + ETCDG+ KND GECRMDII+SEMGY+G+FD+ESYGLTWKVRGFC D SNP+VF+T
Sbjct:    4 DSGNKITSPTSVTKKWLLESELYVTDGAIFYCIGSEEGGDCDELRIQSTGPDDWYEVRGHGGSMYFSHTVVTSWDTPNKKPQETYEGGRSFLNCVSEKLTGETCDGKAKNDEGECRMDIINSEMGYMGFFDAESYGLTWKVRGFCKDLSNPDVFET 159          
BLAST of mRNA_F-serratus_M_contig888.20254.1 vs. uniprot
Match: D8LRM4_ECTSI (Mannuronan C-5-epimerase N-terminal n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRM4_ECTSI)

HSP 1 Score: 238 bits (607), Expect = 1.170e-73
Identity = 107/156 (68.59%), Postives = 131/156 (83.97%), Query Frame = 2
Query:    2 DNDDIMYSPTSVTGKWLLASDLHILRGSIFYCRGASIGGDCDELRIQSTGSTDFNEVRGHGGSLYFENTLVTSWDTPNKSPTDDYEDGRSFINCVSEYESDETCDGQPKNDYGECRMDIIDSEMGYLGWFDSESYGLTWKVRGFCADKSNPEVFDT 469
            D+ + + +P  ++ KWLL ++LHI  G++FYCRG+SIGGDCDELRIQSTG TDF+EVR HGGS+YFE+T+VTSWDTPNK+P   Y  GRSF+NCVSE  + E C GQ +N+ GECRMDII+SE+GYLG+FDSESYGLTWKVRGFC D SNP+VFDT
Sbjct:  113 DSYNTVLNPKVLSNKWLLTAELHITGGAVFYCRGSSIGGDCDELRIQSTGPTDFHEVRAHGGSMYFESTIVTSWDTPNKTPQATYVGGRSFLNCVSEKLTGEVCVGQAQNEMGECRMDIINSEIGYLGYFDSESYGLTWKVRGFCKDLSNPDVFDT 268          
BLAST of mRNA_F-serratus_M_contig888.20254.1 vs. uniprot
Match: A0A6H5JGU8_9PHAE (MEP1 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGU8_9PHAE)

HSP 1 Score: 231 bits (588), Expect = 1.950e-71
Identity = 107/158 (67.72%), Postives = 126/158 (79.75%), Query Frame = 2
Query:   23 SPTSVTGKWLLASDLHILRGSIFYCRGASIGGDCDELRIQSTGSTDFNEVRGHGGSLYFENTLVTSWDTPNKSPTDDYEDGRSFINCVSEYESDETCDGQPKNDYGECRMDIIDSEMGYLGWFDSESYGLTWKVR---------GFCADKSNPEVFDT 469
            +PTSVT KWLL ++L++  G+IFYC G+  GGDCDELRIQSTG  D+ EVRGHGGS+YF +T+VTSWDTPNK P + YE GRSF+NCVSE  + ETCDG  KND GECRMDII+SEMGY+G+FDSESYGLTWKVR         GFC D SNP+VF+T
Sbjct:   56 APTSVTKKWLLEAELYVTNGAIFYCIGSEEGGDCDELRIQSTGPDDWYEVRGHGGSMYFSHTVVTSWDTPNKQPQETYEGGRSFLNCVSEKLTGETCDGMAKNDMGECRMDIINSEMGYMGFFDSESYGLTWKVRRQAGRGVVRGFCKDLSNPDVFET 213          
BLAST of mRNA_F-serratus_M_contig888.20254.1 vs. uniprot
Match: A0A6H5KWQ2_9PHAE (MEP2 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWQ2_9PHAE)

HSP 1 Score: 226 bits (577), Expect = 4.650e-71
Identity = 102/155 (65.81%), Postives = 124/155 (80.00%), Query Frame = 2
Query:   26 PTSVTGKWLLASDLHILRGSIFYCRGASIGGDCDELRIQSTGSTDFNEVRGHGGSLYFENTLVTSWDTPNKSPTDDYEDGRSFINCVSEYESDETCDGQPKNDYGECRMDIIDSEMGYLGWFDSESYGLTWK--------VRGFCADKSNPEVFD 466
            P+ +T  WLLA++L+I  G +FYC+G S GGDC++LRIQSTGS DF+EVRGHGGSLYFE+T+VTSWDTPNK P + YE GRSF+NCVSE  + + C+G  KN+ GECRMDII+SE+ YLG+FDSESYG+TWK        VRGFC D SNPEVFD
Sbjct:   33 PSGITNNWLLAAELYITGGGVFYCKGTSAGGDCNQLRIQSTGSDDFHEVRGHGGSLYFEDTIVTSWDTPNKEPQETYEGGRSFLNCVSEKLTGDDCEGNAKNEMGECRMDIINSEIAYLGYFDSESYGMTWKARLTRGFPVRGFCKDLSNPEVFD 187          
BLAST of mRNA_F-serratus_M_contig888.20254.1 vs. uniprot
Match: D8LC73_ECTSI (Mannuronan C-5-epimerase 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC73_ECTSI)

HSP 1 Score: 233 bits (594), Expect = 4.840e-69
Identity = 101/147 (68.71%), Postives = 125/147 (85.03%), Query Frame = 2
Query:   26 PTSVTGKWLLASDLHILRGSIFYCRGASIGGDCDELRIQSTGSTDFNEVRGHGGSLYFENTLVTSWDTPNKSPTDDYEDGRSFINCVSEYESDETCDGQPKNDYGECRMDIIDSEMGYLGWFDSESYGLTWKVRGFCADKSNPEVFD 466
            P+ +T  WLLA++L+I  G +FYC+G S GGDC++LRIQSTGS DF+EVRGHGGSLYFE+T+VTSWDTPNK P + YE+GRSF+NCVSE  + + C+G  KN+ GECRMDII+SE+ YLG+FDSESYG+TWKVRGFC D SNPEVF+
Sbjct:  484 PSGITNNWLLAAELYITGGGVFYCKGTSAGGDCNQLRIQSTGSDDFHEVRGHGGSLYFEDTIVTSWDTPNKEPQETYENGRSFLNCVSEKLTGDDCEGNAKNEMGECRMDIINSEIAYLGYFDSESYGMTWKVRGFCKDLSNPEVFE 630          
BLAST of mRNA_F-serratus_M_contig888.20254.1 vs. uniprot
Match: D7FRR8_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRR8_ECTSI)

HSP 1 Score: 202 bits (513), Expect = 2.050e-60
Identity = 93/155 (60.00%), Postives = 118/155 (76.13%), Query Frame = 2
Query:    5 NDDIMYSPTSVTGKWLLASDLHILRGSIFYCRGASIGGDCDELRIQSTGSTDFNEVRGHGGSLYFENTLVTSWDTPNKSPTDDYEDGRSFINCVSEY-ESDETCDGQPKNDYGECRMDIIDSEMGYLGWFDSESYGLTWKVRGFCADKSNPEVFD 466
            ND +  + T+ TGKWLL +DL +  G+  YCRG  +GG+C ELRI+ST  +DF E+RGHGG+LYFE+T+VTSWD   + P + Y+DGRSFI CVSE    ++TC     N+ GECRMDIIDSEMGYLG+  SE+YG+TWKVRGFC+D SNP+VFD
Sbjct:   39 NDRVDETATTTTGKWLLTADLFVTGGATLYCRGKGVGGNCAELRIRSTSGSDFFEIRGHGGNLYFEDTIVTSWDVDGRKPQETYKDGRSFIRCVSEVLTGEDTC---AINNMGECRMDIIDSEMGYLGYDASEAYGITWKVRGFCSDLSNPDVFD 190          
BLAST of mRNA_F-serratus_M_contig888.20254.1 vs. uniprot
Match: D7FXE5_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXE5_ECTSI)

HSP 1 Score: 174 bits (441), Expect = 3.980e-50
Identity = 87/148 (58.78%), Postives = 103/148 (69.59%), Query Frame = 2
Query:   29 TSVTGKWLLASDLHILRGSIFYCRGASIGGDCDELRIQSTGSTDFNEVRGHGGSLYFENTLVTSWDTPNKSPTDDYEDGRSFINCVSEY--ESDETCDGQPKNDYGECRMDIIDSEMGYLGWFDSESYGLTWKVRGFCADKSNPEVFD 466
            TS TG WLL  +L++  G      G+  GGD DELR+ ST  T  N +R HGGSL F +T V SWDT   SP +D  DGRS+I+ +SE   + DETC+G  KN  GE RMDI  SE+GYLG++DSESYGLTWKVRGFC DKSNPEVFD
Sbjct:   97 TSATGTWLLTEELYVEDGITLEVYGSEAGGDADELRLLSTNETFIN-LRAHGGSLDFVSTKVFSWDTSTNSPDEDETDGRSYISAISEIITDEDETCEGNAKNTMGEARMDIESSEIGYLGYWDSESYGLTWKVRGFCEDKSNPEVFD 243          
BLAST of mRNA_F-serratus_M_contig888.20254.1 vs. uniprot
Match: D7G339_ECTSI (Mannuronan C-5-epimerase n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G339_ECTSI)

HSP 1 Score: 174 bits (441), Expect = 3.290e-49
Identity = 87/148 (58.78%), Postives = 103/148 (69.59%), Query Frame = 2
Query:   29 TSVTGKWLLASDLHILRGSIFYCRGASIGGDCDELRIQSTGSTDFNEVRGHGGSLYFENTLVTSWDTPNKSPTDDYEDGRSFINCVSEY--ESDETCDGQPKNDYGECRMDIIDSEMGYLGWFDSESYGLTWKVRGFCADKSNPEVFD 466
            TS TG WLL  +L++  G      G+  GGD DELR+ ST  T  N +R HGGSL F +T V SWDT   SP +D  DGRS+I+ +SE   + DETC+G  KN  GE RMDI  SE+GYLG++DSESYGLTWKVRGFC DKSNPEVFD
Sbjct:   97 TSATGTWLLTEELYVEDGITLKVYGSEAGGDADELRLLSTNETFIN-LRAHGGSLDFVSTKVFSWDTSTNSPDEDETDGRSYISAISEIITDEDETCEGNAKNTMGEARMDIESSEIGYLGYWDSESYGLTWKVRGFCEDKSNPEVFD 243          
BLAST of mRNA_F-serratus_M_contig888.20254.1 vs. uniprot
Match: D7FWE8_ECTSI (Mannuronan C-5-epimerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FWE8_ECTSI)

HSP 1 Score: 174 bits (440), Expect = 1.530e-47
Identity = 86/147 (58.50%), Postives = 100/147 (68.03%), Query Frame = 2
Query:   32 SVTGKWLLASDLHILRGSIFYCRGASIGGDCDELRIQSTGSTDFNEVRGHGGSLYFENTLVTSWDTPNKSPTDDYEDGRSFINCVSEYESDE--TCDGQPKNDYGECRMDIIDSEMGYLGWFDSESYGLTWKVRGFCADKSNPEVFD 466
            S TG WLL S L IL G   Y  G S GGD D LRIQST   DF E+RG GGSL F  T VTSWDT       +YE GRSFINCV++++  +  +C G+   + GECRMDIIDS MG +GWFD+ESYGLTWKVRG C+D SN E+ D
Sbjct:  449 SPTGYWLLTSSLEILDGVTLYVHGTSAGGDADVLRIQST-DDDFWEIRGWGGSLSFLETTVTSWDTDKGEERTEYEGGRSFINCVTQFDDSDIWSCSGRSNKERGECRMDIIDSTMGNMGWFDAESYGLTWKVRGLCSDLSNVEIMD 594          
BLAST of mRNA_F-serratus_M_contig888.20254.1 vs. uniprot
Match: A0A6H5JU98_9PHAE (MEP5a protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU98_9PHAE)

HSP 1 Score: 164 bits (414), Expect = 1.020e-46
Identity = 83/145 (57.24%), Postives = 98/145 (67.59%), Query Frame = 2
Query:   38 TGKWLLASDLHILRGSIFYCRGASIGGDCDELRIQSTGSTDFNEVRGHGGSLYFENTLVTSWDTPNKSPTDDYEDGRSFINCVSEY--ESDETCDGQPKNDYGECRMDIIDSEMGYLGWFDSESYGLTWKVRGFCADKSNPEVFD 466
            TG WLL  +L++  G      G   GGD DELR+ ST  T  N +R HGGSL F  T V SWDT   SP +D  DGRS+I+ +SE   + DETC+G  KN  GE RMDI +SE+GYLG+ DSESYGLTWKVRGFC DKSNP +FD
Sbjct:  103 TGTWLLTEELYVEDGITLKVYGTGEGGDADELRLLSTTDTYIN-LRAHGGSLDFVGTKVFSWDTSTNSPDEDETDGRSYISAISEIITDEDETCEGNAKNTMGEARMDIENSEIGYLGFQDSESYGLTWKVRGFCKDKSNPGIFD 246          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig888.20254.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FIU4_ECTSI6.850e-7669.87Mannuronan C-5-epimerase n=1 Tax=Ectocarpus silicu... [more]
D8LRM4_ECTSI1.170e-7368.59Mannuronan C-5-epimerase N-terminal n=1 Tax=Ectoca... [more]
A0A6H5JGU8_9PHAE1.950e-7167.72MEP1 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A6H5KWQ2_9PHAE4.650e-7165.81MEP2 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
D8LC73_ECTSI4.840e-6968.71Mannuronan C-5-epimerase 4 n=1 Tax=Ectocarpus sili... [more]
D7FRR8_ECTSI2.050e-6060.00Mannuronan C-5-epimerase n=1 Tax=Ectocarpus silicu... [more]
D7FXE5_ECTSI3.980e-5058.78Mannuronan C-5-epimerase n=1 Tax=Ectocarpus silicu... [more]
D7G339_ECTSI3.290e-4958.78Mannuronan C-5-epimerase n=2 Tax=Ectocarpus silicu... [more]
D7FWE8_ECTSI1.530e-4758.50Mannuronan C-5-epimerase n=2 Tax=Ectocarpus TaxID=... [more]
A0A6H5JU98_9PHAE1.020e-4657.24MEP5a protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig888contigF-serratus_M_contig888:183485..183953 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score235.7
Seed ortholog evalue1.4e-59
Seed eggNOG ortholog2880.D8LC73
KEGG koko:K11244
KEGG Pathwayko04011,ko04139,map04011,map04139
Hectar predicted targeting categoryother localisation
EggNOG free text desc.protein xylosyltransferase activity
EggNOG OGsKOG4157@1,KOG4157@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Exons1
Model size469
Cds size453
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932582.3099928-UTR-F-serratus_M_contig888:183484..1835001622932582.3099928-UTR-F-serratus_M_contig888:183484..183500Fucus serratus maleUTRF-serratus_M_contig888 183485..183500 +
1690964376.983717-UTR-F-serratus_M_contig888:183484..1835001690964376.983717-UTR-F-serratus_M_contig888:183484..183500Fucus serratus maleUTRF-serratus_M_contig888 183485..183500 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932582.3294868-CDS-F-serratus_M_contig888:183500..1839531622932582.3294868-CDS-F-serratus_M_contig888:183500..183953Fucus serratus maleCDSF-serratus_M_contig888 183501..183953 +
1690964376.9977655-CDS-F-serratus_M_contig888:183500..1839531690964376.9977655-CDS-F-serratus_M_contig888:183500..183953Fucus serratus maleCDSF-serratus_M_contig888 183501..183953 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig888.20254.1prot_F-serratus_M_contig888.20254.1Fucus serratus malepolypeptideF-serratus_M_contig888 183501..183953 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig888.20254.1

>prot_F-serratus_M_contig888.20254.1 ID=prot_F-serratus_M_contig888.20254.1|Name=mRNA_F-serratus_M_contig888.20254.1|organism=Fucus serratus male|type=polypeptide|length=151bp
MYSPTSVTGKWLLASDLHILRGSIFYCRGASIGGDCDELRIQSTGSTDFN
EVRGHGGSLYFENTLVTSWDTPNKSPTDDYEDGRSFINCVSEYESDETCD
GQPKNDYGECRMDIIDSEMGYLGWFDSESYGLTWKVRGFCADKSNPEVFD
T
back to top

mRNA from alignment at F-serratus_M_contig888:183485..183953+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig888.20254.1 ID=mRNA_F-serratus_M_contig888.20254.1|Name=mRNA_F-serratus_M_contig888.20254.1|organism=Fucus serratus male|type=mRNA|length=469bp|location=Sequence derived from alignment at F-serratus_M_contig888:183485..183953+ (Fucus serratus male)
CGACAACGACGACATCATGTACAGCCCCACTAGCGTGACAGGCAAGTGGC TCCTCGCGTCCGACCTGCATATCCTCAGAGGGTCCATCTTCTACTGCCGC GGGGCCAGCATAGGCGGCGACTGCGATGAACTGCGAATCCAGTCTACCGG CTCCACCGACTTCAACGAGGTGCGCGGTCACGGTGGCAGCCTGTACTTCG AGAACACCCTTGTCACCTCCTGGGATACCCCGAACAAGAGCCCAACGGAT GATTACGAGGACGGCCGCTCGTTCATCAACTGCGTGTCCGAGTATGAATC GGACGAGACGTGTGACGGCCAGCCCAAGAATGACTACGGGGAGTGCCGCA TGGATATCATCGACTCCGAGATGGGCTACCTGGGGTGGTTCGACTCGGAG TCTTACGGTCTAACCTGGAAGGTCCGCGGGTTCTGCGCCGACAAGAGCAA CCCGGAAGTGTTCGACACA
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig888:183485..183953+

>mRNA_F-serratus_M_contig888.20254.1 ID=mRNA_F-serratus_M_contig888.20254.1|Name=mRNA_F-serratus_M_contig888.20254.1|organism=Fucus serratus male|type=CDS|length=906bp|location=Sequence derived from alignment at F-serratus_M_contig888:183485..183953+ (Fucus serratus male)
ATGTACAGCCCCACTAGCGTGACAGGCAAGTGGCTCCTCGCGTCCGACCT
GCATATCCTCAGAGGGTCCATCTTCTACTGCCGCGGGGCCAGCATAGGCG
GCGACTGCGATGAACTGCGAATCCAGTCTACCGGCTCCACCGACTTCAAC
GAGGTGCGCGGTCACGGTGGCAGCCTGTACTTCGAGAACACCCTTGTCAC
CTCCTGGGATACCCCGAACAAGAGCCCAACGGATGATTACGAGGACGGCC
GCTCGTTCATCAACTGCGTGTCCGAGTATGAATCGGACGAGACGTGTGAC
GGCCAGCCCAAGAATGACTACGGGGAGTGCCGCATGGATATCATCGACTC
CGAGATGGGCTACCTGGGGTGGTTCGACTCGGAGTCTTACGGTCTAACCT
GGAAGGTCCGCGGGTTCTGCGCCGACAAGAGCAACCCGGAAGTGTTCGAC
ACAATGTACAGCCCCACTAGCGTGACAGGCAAGTGGCTCCTCGCGTCCGA
CCTGCATATCCTCAGAGGGTCCATCTTCTACTGCCGCGGGGCCAGCATAG
GCGGCGACTGCGATGAACTGCGAATCCAGTCTACCGGCTCCACCGACTTC
AACGAGGTGCGCGGTCACGGTGGCAGCCTGTACTTCGAGAACACCCTTGT
CACCTCCTGGGATACCCCGAACAAGAGCCCAACGGATGATTACGAGGACG
GCCGCTCGTTCATCAACTGCGTGTCCGAGTATGAATCGGACGAGACGTGT
GACGGCCAGCCCAAGAATGACTACGGGGAGTGCCGCATGGATATCATCGA
CTCCGAGATGGGCTACCTGGGGTGGTTCGACTCGGAGTCTTACGGTCTAA
CCTGGAAGGTCCGCGGGTTCTGCGCCGACAAGAGCAACCCGGAAGTGTTC
GACACA
back to top