mRNA_F-serratus_M_contig887.20242.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig887.20242.1
Unique NamemRNA_F-serratus_M_contig887.20242.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig887.20242.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig887contigF-serratus_M_contig887:219621..221184 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size524
Cds size276
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig887.20242.1prot_F-serratus_M_contig887.20242.1Fucus serratus malepolypeptideF-serratus_M_contig887 219868..221184 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932578.3743043-UTR-F-serratus_M_contig887:219620..2198671622932578.3743043-UTR-F-serratus_M_contig887:219620..219867Fucus serratus maleUTRF-serratus_M_contig887 219621..219867 -
1690964375.0336015-UTR-F-serratus_M_contig887:219620..2198671690964375.0336015-UTR-F-serratus_M_contig887:219620..219867Fucus serratus maleUTRF-serratus_M_contig887 219621..219867 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932578.386959-CDS-F-serratus_M_contig887:219867..2200601622932578.386959-CDS-F-serratus_M_contig887:219867..220060Fucus serratus maleCDSF-serratus_M_contig887 219868..220060 -
1690964375.044564-CDS-F-serratus_M_contig887:219867..2200601690964375.044564-CDS-F-serratus_M_contig887:219867..220060Fucus serratus maleCDSF-serratus_M_contig887 219868..220060 -
1622932578.39903-CDS-F-serratus_M_contig887:221101..2211841622932578.39903-CDS-F-serratus_M_contig887:221101..221184Fucus serratus maleCDSF-serratus_M_contig887 221102..221184 -
1690964375.0631974-CDS-F-serratus_M_contig887:221101..2211841690964375.0631974-CDS-F-serratus_M_contig887:221101..221184Fucus serratus maleCDSF-serratus_M_contig887 221102..221184 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig887.20242.1

>prot_F-serratus_M_contig887.20242.1 ID=prot_F-serratus_M_contig887.20242.1|Name=mRNA_F-serratus_M_contig887.20242.1|organism=Fucus serratus male|type=polypeptide|length=92bp
WCGSFTCDLSHWQDKDKVVGNSNDSHGSASVHRSHRGGFALAYTDHSGKR
QRAPSSRILRRATTPRAVLGDYYSQEPGLDDREGGDRPGGA*
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mRNA from alignment at F-serratus_M_contig887:219621..221184-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig887.20242.1 ID=mRNA_F-serratus_M_contig887.20242.1|Name=mRNA_F-serratus_M_contig887.20242.1|organism=Fucus serratus male|type=mRNA|length=1564bp|location=Sequence derived from alignment at F-serratus_M_contig887:219621..221184- (Fucus serratus male)
TGGTGTGGTTCGTTTACTTGCGATCTTTCCCATTGGCAGGACAAAGATAA
GGTAGTCGGTAACAGCAACGATTCGCATGGAAGGTGAGTCAAGGTGCTCA
TAAACTCGAAACAATCTTGTTTCACGTACCTGTCTGCTGTTGGGCTTTGG
GGGTGGGGTTGAGGGGGGCGAGGTTGGTGGGAATCTTCGTGCGTGGTGTT
TTTCTCTTGGCTCTTTTTGTCATCTATTGTTTGGGTGGACGAGGTCCTAG
GGAGATGAGTCCTCAATGTTCGTGATACATGTAATTAGATTATGATTTGA
TGGACGAAAATATGGTGGTTGCTTGGAAGATATGCCCGTTGTACTTATGT
TAGATACGGAATATGTTGTATATTGCATGTTGTAAGTTATGACATGCTGT
GCACCCGTCGGGAGGTGTCAAAAGGTGCTGGTGCGTCTTTTTTGACACCA
CGCTCGCCGTGTGGATTCTCCCTTCCTTTTTTGCATCTTAGTTTTGGATC
TCAAACACCGTTGTTTCTTTCTTATCTTATCGTGTTAAGGGTTTCAGAGG
TTGCTGTATCTATCGGCCTAACTTTTCCTCTTGTCACCAGGCGGGGGGAA
AAATGTTGTAATATCGACCAAGTCTCTTGCTTGAAAAAACGAGCGCTTTA
ATATTGTTAGAAATATCGACATTTGAAGACCTCCATAGTAAAAGAAGCAT
CGGCAGAGATTTGTGCATTTACTGTGATTTCGCAAACTTTTCACAAAGAG
TAACAATATTTTATACTTTGCGAGCGGAGCGACCTTCTGATCTGGGTAGC
GCCTCGATTTTGGCAGCGTGTGACGTTTTGTTACGGTTCGGGCACGCGAA
GGTATACGCGCGCGTACGCGCTTACTCTCGATGCGGATCTTGAAAATCCC
AATTACTTTACTGATGTTGAGCTTTATCTATGCGGCGAGCGCCAGCAAGC
ACCGTTCACGCCGCGGTCAGTTCGCTTCAACGGACACATCCTCCGACGAG
TGACAGCGAGTTCCGTCCGTACGTGTTTTAAGGAGAGCAACTACCCCTCG
CCCTCTGCCAACTCTCGATGATGCAAATTTTGAAATCTCCATCTACTTTA
TTGCCTATCGTTTGCATCGAGCAGCGCTAGCGTGCACCGTTCACACCGCG
GTGGGTTCGCCTTAGCCTACACAGATCATTCCGGCAAGCGACAGCGAGCT
CCGTCCAGTCGTATTTTGAGGAGAGCAACTACCCCACGCGCCGTTCTGGG
CGATTACTATTCACAAGAGCCAGGCTTAGACGACAGAGAAGGTGGTGATA
GACCTGGGGGAGCCTGATGCCACCGCGAAGCTGACCTTCGTGTGCCTCAG
CCGCGCCAAGTGACTCGTAGACCTTTTGGTGCGAACCCATGCCTTTCGAC
AGGGTTTCGAAGCTTGGTGATAAACCTACTTTGAATATTAGACTTGAAGA
GGAAGTGTGCAACTTAAGGCGGTCGCAGTTAAAACACTTCTACGACACGG
GGGCGATCTTAGTTAGCCGCCGTTGATAGAAATTGGTGATGATTTGTCAA
AAATAGTTGCTAAG
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Coding sequence (CDS) from alignment at F-serratus_M_contig887:219621..221184-

>mRNA_F-serratus_M_contig887.20242.1 ID=mRNA_F-serratus_M_contig887.20242.1|Name=mRNA_F-serratus_M_contig887.20242.1|organism=Fucus serratus male|type=CDS|length=552bp|location=Sequence derived from alignment at F-serratus_M_contig887:219621..221184- (Fucus serratus male)
TGGTGTGGTTCGTTTACTTGCGATCTTTCCCATTGGCAGGACAAAGATAA
GGTAGTCGGTAACAGCAACGATTCGCATGGAAGTGGTGTGGTTCGTTTAC
TTGCGATCTTTCCCATTGGCAGGACAAAGATAAGGTAGTCGGTAACAGCA
ACGATTCGCATGGAAGCGCTAGCGTGCACCGTTCACACCGCGGTGGGTTC
GCCTTAGCCTACACAGATCATTCCGGCAAGCGACAGCGAGCTCCGTCCAG
TCGTATTTTGAGGAGAGCAACTACCCCACGCGCCGTTCTGGGCGATTACT
ATTCACAAGAGCCAGGCTTAGACGACAGAGAAGGTGGTGATAGACCTGGG
GGAGCCTGACGCTAGCGTGCACCGTTCACACCGCGGTGGGTTCGCCTTAG
CCTACACAGATCATTCCGGCAAGCGACAGCGAGCTCCGTCCAGTCGTATT
TTGAGGAGAGCAACTACCCCACGCGCCGTTCTGGGCGATTACTATTCACA
AGAGCCAGGCTTAGACGACAGAGAAGGTGGTGATAGACCTGGGGGAGCCT
GA
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