mRNA_F-serratus_M_contig887.20241.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig887.20241.1 vs. uniprot
Match: A0A6H5JBM8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBM8_9PHAE) HSP 1 Score: 157 bits (397), Expect = 1.130e-43 Identity = 82/102 (80.39%), Postives = 89/102 (87.25%), Query Frame = 3
Query: 387 KQGWRAGGACRPKGGAAGHSRFLCTICGVQAPSLTSMQAHHVSKHDKLPWDPSLYEDVQAKYGGTTQGVAVRGTTNAKKLKGKTTSKSEMEDLLAVGLKGAK 692
K G AG A R KGGAAGHSRFLCTICGVQAPSLTSM+AHH SKH KLPWDPSLYEDVQAK+GGTTQGVAVRGTTNAKKLKGK K++++DLLA GL+G K
Sbjct: 26 KGGGLAGLADR-KGGAAGHSRFLCTICGVQAPSLTSMKAHHESKHVKLPWDPSLYEDVQAKHGGTTQGVAVRGTTNAKKLKGKNP-KADLDDLLAAGLRGGK 125
BLAST of mRNA_F-serratus_M_contig887.20241.1 vs. uniprot
Match: D7FVH3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVH3_ECTSI) HSP 1 Score: 106 bits (264), Expect = 5.790e-25 Identity = 51/66 (77.27%), Postives = 58/66 (87.88%), Query Frame = 3
Query: 495 MQAHHVSKHDKLPWDPSLYEDVQAKYGGTTQGVAVRGTTNAKKLKGKTTSKSEMEDLLAVGLKGAK 692
M+AHH SKH KLPWDPSLYEDVQAK+GGTTQGVAVRGTTNAKKLKGK K++++DLLA GL+ K
Sbjct: 1 MKAHHESKHTKLPWDPSLYEDVQAKHGGTTQGVAVRGTTNAKKLKGKNP-KADLDDLLAAGLRAGK 65
BLAST of mRNA_F-serratus_M_contig887.20241.1 vs. uniprot
Match: A0A7S2TIV4_9EUKA (Hypothetical protein n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2TIV4_9EUKA) HSP 1 Score: 92.0 bits (227), Expect = 2.730e-19 Identity = 44/84 (52.38%), Postives = 61/84 (72.62%), Query Frame = 3
Query: 393 GWRAGGACRPKGGAAGHSRFLCTICGVQAPSLTSMQAHHVSKHDKLPWDPSLYEDVQAKYGGTTQGVAVRGTT-NAKKLKGKTT 641
G A G KGG AGH++F C +CG+++PSLT+++ HH +KH K+P+DP ++V AKYGG+T+GVAV GT NAKK K + T
Sbjct: 14 GGGAEGLMDRKGGEAGHAKFECHVCGIRSPSLTTLKIHHEAKHPKIPFDPEKAQNVHAKYGGSTRGVAVHGTLKNAKKKKKEKT 97
BLAST of mRNA_F-serratus_M_contig887.20241.1 vs. uniprot
Match: A0A7S2TKJ0_9EUKA (Hypothetical protein n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2TKJ0_9EUKA) HSP 1 Score: 93.2 bits (230), Expect = 6.630e-19 Identity = 47/107 (43.93%), Postives = 69/107 (64.49%), Query Frame = 3
Query: 324 KGEANQALQR*AQQESGGFFAKQGWRAGGACRPKGGAAGHSRFLCTICGVQAPSLTSMQAHHVSKHDKLPWDPSLYEDVQAKYGGTTQGVAVRGTT-NAKKLKGKTT 641
KG+ N+ + + + G A G KGG AGH++F C +CG+++PSLT+++ HH +KH K+P+DP ++V AKYGG+T+GVAV GT NAKK K + T
Sbjct: 60 KGKENKHTKAELKAKEKAATKNMGGGAEGLMDRKGGEAGHAKFECHVCGIRSPSLTTLKIHHEAKHPKIPFDPEKAQNVHAKYGGSTRGVAVHGTLKNAKKKKKEKT 166
BLAST of mRNA_F-serratus_M_contig887.20241.1 vs. uniprot
Match: A0A7S1LZU9_NEODS (Hypothetical protein n=1 Tax=Neobodo designis TaxID=312471 RepID=A0A7S1LZU9_NEODS) HSP 1 Score: 87.8 bits (216), Expect = 1.170e-17 Identity = 43/73 (58.90%), Postives = 51/73 (69.86%), Query Frame = 3
Query: 399 RAGGACRPK---GGAAGHSRFLCTICGVQAPSLTSMQAHHVSKHDKLPWDPSLYEDVQAKYGGTTQGVAVRGT 608
R GGA K GGAAGH+RF C CG APSL +MQ+HH SKH K+ WD S+Y D +GGTT+GVAVRG+
Sbjct: 26 RGGGAAGLKDRMGGAAGHARFECPHCGQAAPSLKNMQSHHESKHPKMAWDESVYVDKHELHGGTTKGVAVRGS 98
BLAST of mRNA_F-serratus_M_contig887.20241.1 vs. uniprot
Match: A0A250X9R0_9CHLO (Uncharacterized protein n=2 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250X9R0_9CHLO) HSP 1 Score: 87.4 bits (215), Expect = 1.490e-17 Identity = 43/73 (58.90%), Postives = 51/73 (69.86%), Query Frame = 3
Query: 393 GWRAGGACRPKGGAAGHSRFLCTICGVQAPSLTSMQAHHVSKHDKLPWDPSLYEDVQAKYGGTTQGVAVRGTT 611
G +AG A R KGG AGH++F C IC APS+ SMQ HH SKH LPW+P D+ +GGTTQGVAVRG+T
Sbjct: 27 GGKAGLADR-KGGQAGHAKFQCHICKAAAPSIKSMQDHHESKHPGLPWEPEKCTDLHEVFGGTTQGVAVRGST 98
BLAST of mRNA_F-serratus_M_contig887.20241.1 vs. uniprot
Match: A0A7S0W810_9CRYP (Hypothetical protein n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0W810_9CRYP) HSP 1 Score: 85.5 bits (210), Expect = 1.190e-16 Identity = 41/68 (60.29%), Postives = 50/68 (73.53%), Query Frame = 3
Query: 426 GGAAGHSRFLCTICGVQAPSLTSMQAHHVSKHDKLPWDPSLYEDVQAKYGGTTQGVAVRGTTN-AKKL 626
GGAAGH++F+C IC +QAPS +MQ HH SKH KLP+DP + QA +GG+TQGV V GT AKKL
Sbjct: 46 GGAAGHAKFVCPICNMQAPSPKNMQEHHESKHPKLPFDPEACINAQAVHGGSTQGVGVAGTAKKAKKL 113
BLAST of mRNA_F-serratus_M_contig887.20241.1 vs. uniprot
Match: A0A7S1X1G5_9CHLO (Hypothetical protein n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1X1G5_9CHLO) HSP 1 Score: 84.0 bits (206), Expect = 2.560e-16 Identity = 41/72 (56.94%), Postives = 53/72 (73.61%), Query Frame = 3
Query: 393 GWRAGGACRPKGGAAGHSRFLCTICGVQAPSLTSMQAHHVSKHDKLPWDPSLYEDVQAKYGGTTQGVAVRGT 608
G +AG A R KGGAAGH+++ C IC Q PSLTSM+ H +KHDKLP++ D+ + YGGTTQGV+VRG+
Sbjct: 28 GGKAGLADR-KGGAAGHAKYKCPICSTQCPSLTSMKIHWDAKHDKLPFEEEKCIDMHSTYGGTTQGVSVRGS 98
BLAST of mRNA_F-serratus_M_contig887.20241.1 vs. uniprot
Match: A0A0N0DVM5_9TRYP (Uncharacterized protein n=1 Tax=Leptomonas pyrrhocoris TaxID=157538 RepID=A0A0N0DVM5_9TRYP) HSP 1 Score: 82.0 bits (201), Expect = 1.310e-15 Identity = 38/76 (50.00%), Postives = 52/76 (68.42%), Query Frame = 3
Query: 393 GWRAGGACRPKGGAAGHSRFLCTICGVQAPSLTSMQAHHVSKHDKLPWDPSLYEDVQAKYGGTTQGVAVRGTTNAK 620
G A G KGGAAGHSRF+C +C QAP + SM AH+ S+H + ++ S ++D+Q K+GGTT+GVAV G+ K
Sbjct: 27 GGGAAGLQDRKGGAAGHSRFICKVCMAQAPDMKSMHAHYDSRHPAVTFNESDFDDLQEKFGGTTKGVAVHGSLKKK 102
BLAST of mRNA_F-serratus_M_contig887.20241.1 vs. uniprot
Match: A0A061RGX5_9CHLO (C2H2-type domain-containing protein n=2 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061RGX5_9CHLO) HSP 1 Score: 78.6 bits (192), Expect = 2.260e-14 Identity = 41/78 (52.56%), Postives = 52/78 (66.67%), Query Frame = 3
Query: 387 KQGWRAGGACRPKGGAAGHSRFLCTICGVQAPSLTSMQAHHVSKHDKLPWDPSLYEDVQAKYGGTTQGVAVRGTTNAK 620
K G +AG R KGG AGH+++ C C Q PSL+SM+ H +KH K P+D S DV A+ GGTT+GVAVRG+T K
Sbjct: 25 KGGGKAGYEDR-KGGKAGHAKYRCPNCATQCPSLSSMKIHWEAKHSKEPFDESKCIDVHAEVGGTTKGVAVRGSTKKK 101 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig887.20241.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 18
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig887.20241.1 >prot_F-serratus_M_contig887.20241.1 ID=prot_F-serratus_M_contig887.20241.1|Name=mRNA_F-serratus_M_contig887.20241.1|organism=Fucus serratus male|type=polypeptide|length=67bp MQAHHVSKHDKLPWDPSLYEDVQAKYGGTTQGVAVRGTTNAKKLKGKTTSback to top mRNA from alignment at F-serratus_M_contig887:181009..184627+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig887.20241.1 ID=mRNA_F-serratus_M_contig887.20241.1|Name=mRNA_F-serratus_M_contig887.20241.1|organism=Fucus serratus male|type=mRNA|length=3619bp|location=Sequence derived from alignment at F-serratus_M_contig887:181009..184627+ (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig887:181009..184627+ >mRNA_F-serratus_M_contig887.20241.1 ID=mRNA_F-serratus_M_contig887.20241.1|Name=mRNA_F-serratus_M_contig887.20241.1|organism=Fucus serratus male|type=CDS|length=402bp|location=Sequence derived from alignment at F-serratus_M_contig887:181009..184627+ (Fucus serratus male)back to top |