mRNA_F-serratus_M_contig883.20216.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig883.20216.1 vs. uniprot
Match: D7FP96_ECTSI (R3H domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FP96_ECTSI) HSP 1 Score: 327 bits (839), Expect = 1.390e-98 Identity = 195/362 (53.87%), Postives = 237/362 (65.47%), Query Frame = 3
Query: 144 DEGPLLVARHDPIPVAAAEDQDHTPTIVGLL--YHSPPDGPRGGGDADDSLETVASVNTGAGRAHTPLRGNRTHTPQRPRSSSLLHTAAAPVQVATP-RGEGDARRQLRGRRKQRRWENDNLIGVERFLRGRYSQEEGEASHLTVSHTWRSSLSVLVSDQSTSADVIEARERVRNGLQPKHSAGQGIHNPGSRHFAGGKWADAEERFVLVEKRLRDVVVRALRSPEMMSFVSGLETLLEAFAQRRKIETADVGAALAASLISRPTVEGK--------GSGEAAAETTLLVSLGPSPFHRLLLHALCQYWRLRSRSEETGEGRIVRVSTPPT---------SRKAFSLPDTFLAEFVFHARLR 1169
+E P+L+ARH +D+ +P+ G + H PDG G D DDSL V S +TGAGRAHTP R NR R SS+LHTAAAPVQ ++ R EG++RRQ GRRKQRRWENDNL+GVE+FLRGR++ EEGEA HLTV HTWRSSL LVSD + E RE RNG+QP G G+RHF GGKW DAEERF+LVE+RLRD+VVRALR+P ++ F+ GLETLL F Q ++I T ++ +AL ++L S P VE + EA A TLLV LGPSPFHRLLLHALCQY +LRS+SEET GRIVRV P + S AF+ P+ L EFV RL+
Sbjct: 43 EEAPVLIARH----YETRDDRQRSPSHGGAVESVHHHPDGRTGHDDEDDSLAVVFSADTGAGRAHTPQRLNRXXXXXXLRPSSILHTAAAPVQQSSATRREGESRRQPAGRRKQRRWENDNLLGVEKFLRGRHAHEEGEAEHLTVKHTWRSSLGDLVSDPRAA----EVRESFRNGMQPTPQKGGSAPGSGARHFTGGKWEDAEERFLLVERRLRDIVVRALRNPALVGFLEGLETLLGEFTQTKQILT-EMPSALRSALASPPKVEVRKXXXXXXXXXAEAGAGPTLLVPLGPSPFHRLLLHALCQYQKLRSKSEETKRGRIVRVMIPTSXXXXXXXXXSGTAFAAPNAPLTEFVLRTRLQ 395
BLAST of mRNA_F-serratus_M_contig883.20216.1 vs. uniprot
Match: A0A835ZHM7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHM7_9STRA) HSP 1 Score: 117 bits (294), Expect = 1.170e-24 Identity = 104/272 (38.24%), Postives = 136/272 (50.00%), Query Frame = 3
Query: 315 GAGRAHTPLR--GNRTHTPQRPRSSSLLHTAAAPVQVATPRGEGDARRQLRGRRKQRRWENDNLIGVERFLRGRYSQ-EEGEAS-------HLTVSHTWRSSLSVLVSDQSTSADVIEA--RERVRNGLQPKHSAGQGIHNPGSRHFAGGKWADAEERFVLVEKRLRDVVVRALRSPEMMSFVSGLETLLEAFAQRRKIETADVGAALAASLISRPTVEGKGSGEAAAETTLLVSLGPSPFHRLLLHALCQYWRLRSRSE-ETGEGRIVRVS 1091
GAGRA TP+R G+R TPQR AAP+ A EG Q RGRR+QRRW NDN G+ + + G G A HL++ +WRSSL LV AD ++A R R G P + H G + + G W DAEERF + KRLRDVV ++L + ++V+ +E L F R + LA +L + ++ G A L V+L SPFHRLLLHA CQY L S+S+ E G + V VS
Sbjct: 44 GAGRASTPVRVSGSRAVTPQRA-------VYAAPIAAAQ---EGRPS-QHRGRRRQRRWANDNFFGIHKAISGGGGDGSSGGADAMSSLMQHLSLDVSWRSSLGDLV------ADEVDAPLRTAARQGAAPAPALS---HGSGHQQYRGTHWEDAEERFARIPKRLRDVVTQSLHGATLRAYVAAVEATLLYFITARALPPTTPDP-LAEALRTPLQLQAGPKGGA----RLGVALHDSPFHRLLLHAACQYHGLLSKSDAEQGGVKTVYVS 290
BLAST of mRNA_F-serratus_M_contig883.20216.1 vs. uniprot
Match: A0A024UVM4_9STRA (R3H-assoc domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UVM4_9STRA) HSP 1 Score: 80.9 bits (198), Expect = 2.360e-12 Identity = 65/228 (28.51%), Postives = 110/228 (48.25%), Query Frame = 3
Query: 462 GRRKQRRWENDNLIGVERFLRGRYSQEEGEASHLTVSHTWRSSLSVLVSDQSTSADVIEARERVRNGLQPKHSAGQGIHNPGSRHFAGGKWADAEERFVLVEKRLRDVVVRALRSPEMMSFVSGLETLLEAFAQRRKIETADVGAALAASLISRPTV---------EGKGSGEAA-----AETTLLVSLGPSPFHRLLLHALCQYWRLRSRS--EETGEGRIVRVSTP 1097
G+R Q R+ ND+ G R + E H+ VS W+S+ L ++ E E RN +P H+ N R W +A++ F V+KR R +++ + S M F+ +E+ + F Q ++++A+V + S ++ P + K +G + +ET L+V L SPFHRLL+HA CQ++ L S+S + T + +I+R+ P
Sbjct: 98 GKRSQNRYFNDHHFGN----RAATATLEELMEHMNVSVDWKSNFEELARPENQ-----ELAEAFRNVKEPTHARTNAKQNGTHRAKPATDWTEADDMFTRVDKRARSILLSSFVS--MQEFIEAVESFVVHFVQWNEVQSANVLSPRLTSWLAAPMTIDIVTPMVRDAKAAGTRSKPAKHSETVLVVPLLESPFHRLLIHATCQFYGLNSKSHFDATLKYKIMRIRRP 314
BLAST of mRNA_F-serratus_M_contig883.20216.1 vs. uniprot
Match: K3WHK0_GLOUD (R3H domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WHK0_GLOUD) HSP 1 Score: 75.1 bits (183), Expect = 1.860e-10 Identity = 80/290 (27.59%), Postives = 139/290 (47.93%), Query Frame = 3
Query: 303 SVNTGAGRAHTPLRGNRTHTPQRPRSSSLLHTAAAPVQVATPRGEGDARRQLRGRRKQRRWENDNLIGVERFLRGRYSQEEGEASHLTVSHTWRSSLSVLVSDQSTSADVIEARERVRNG-LQPKHSAGQGIHNPGSRHFAGGKWADAEERFVLVEKRLRDVVVRALRSPEMMSFVSGLETLLEAFAQRRKIETADVGAALAASLISRPTVEGKGSGEAAAETTLLVSLGPSPFHRLLLHALCQYWRLRSRSEETGE--GRIVRVSTPPTSRKAFSLPDTFLAEFVFHAR 1163
S G+ RA TP++ R+ TP+ + S L P++ A + + G+RKQ+RW ND+ G R ++ E H++++ WRS+ L Q+ E + R G P G+ P R W DAEE F+ +++R R ++VR+ +S SF+ +E ++ F Q R++ + A+ + + P K S + + L++ L S FHRL++H++CQ++ +RSR+E +I+ + +P + A L L EF+ R
Sbjct: 78 SNGNGSSRAKTPVK--RSTTPEASQRSKRLININ-PIRSAAYLSKPNELPV--GQRKQQRWFNDHHFGN----RVATTRLEDLMEHMSINVEWRSNFQKLAEPQNQ-----ELQTAFRKGKFTPSEQKGE----PKLRRR--DDWNDAEEMFLRIDRRARTLLVRSFQS--FASFIEAVEYVVLHFIQWREVPSEIEVASGLLRVQTHPMELLKASEK---DVRLVIPLVDSAFHRLIIHSVCQFYGVRSRTEANRRFNTKIMVLKSPKSKFSAEELAKNSLCEFIRETR 342
BLAST of mRNA_F-serratus_M_contig883.20216.1 vs. uniprot
Match: A0A6G0W807_9STRA (R3H-assoc domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0W807_9STRA) HSP 1 Score: 73.6 bits (179), Expect = 6.510e-10 Identity = 65/227 (28.63%), Postives = 104/227 (45.81%), Query Frame = 3
Query: 462 GRRKQRRWENDNLIGVERFLRGRYSQEEGEASHLTVSHTWRSSLSVLVSDQSTSADVIEARERVRNGLQPKHSAGQGIHNPGSRHFAGGKWADAEERFVLVEKRLRDVVVRALRSPEMMSFVSGLETLLEAFAQRRKIETADVGAALAASLISRPTVEGKG----SGEAAA---------ETTLLVSLGPSPFHRLLLHALCQYWRLRSRSEETG--EGRIVRVSTP 1097
G+R Q R+ ND+ G R + E H++VS W+S+ +L ++ E E RN +P H+ N R W +AE F V+KR R +++ S M +V +E ++ F Q + + D+ L L + TVE +AA+ ET L++ L SPFHRLL+HA CQ++ L S+S + +++R+ P
Sbjct: 99 GKRSQNRYFNDHHFGN----RAATATLEELMEHMSVSVEWKSNFEILARPENQ-----ELAEAFRNVKEPTHARSNSKQNGTHRGKRNDDWTEAENMFTRVDKRARSILLATFTS--MQEYVEAVELVVVHFVQWNEAPS-DISPMLLNWLAAPMTVETLTPMVREAKAASTRMKPSKHKETVLVLPLADSPFHRLLIHATCQFYGLHSKSHFNPALKCKVMRIRRP 313
BLAST of mRNA_F-serratus_M_contig883.20216.1 vs. uniprot
Match: A0A8K1FEI2_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FEI2_PYTOL) HSP 1 Score: 73.2 bits (178), Expect = 6.590e-10 Identity = 68/244 (27.87%), Postives = 112/244 (45.90%), Query Frame = 3
Query: 462 GRRKQRRWENDNLIGVERFLRGRYSQEEGEASHLTVSHTWRSSLSVLVSDQSTSADVI--EARERVRNGL-QPKHSAGQGIHNPGSRHFAGGKWADAEERFVLVEKRLRDVVVRALRSPEMMSFVSGLETLLEAFAQRRK----IETADVGAALAASLISRPTVEGKGSGEAAAETTLLVSLGPSPFHRLLLHALCQYWRLRSRSEETGE--GRIVRVSTPPTSRKAFSLPDTFLAEFVFHARL 1166
G RKQ+RW ND+ G + ++ E H+T++ WRS+ L ++ V + R +V+NG QPK W DAEE F +++R R +++R+ S + F+ +E ++ F Q R+ IE D + + A I TV + L + L S FHRL++H++CQ++ +RSR+E +I+ + +P L L EF+ RL
Sbjct: 111 GVRKQQRWFNDHHFGN----KAASTRLEDLMEHMTLNVEWRSNFQKLAEPENKDLQVAFRKGRVQVQNGSNQPKWRRKD-------------DWNDAEEMFTRIDRRARTLLMRSFNS--FVDFIEAVEHVVLHFVQWRELPSEIEITDGLSRVLAHPIELATVNEN-------DVRLCIPLSDSAFHRLIVHSVCQFYGVRSRTEANRRFNTKIMVLKSPKKKFSQEQLEKISLCEFIRETRL 328
BLAST of mRNA_F-serratus_M_contig883.20216.1 vs. uniprot
Match: H3GQZ4_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GQZ4_PHYRM) HSP 1 Score: 72.8 bits (177), Expect = 9.290e-10 Identity = 71/278 (25.54%), Postives = 128/278 (46.04%), Query Frame = 3
Query: 348 NRTHTPQRPRSSSLLHTAAAPVQVATPRGEGDARRQLR---GRRKQRRWENDNLIGVERFLRGRYSQEEGEASHLTVSHTWRSSLSVLVSDQSTSADVIEARERVRNGLQPKHSAGQGIHNPGSRHFAGGKWADAEERFVLVEKRLRDVVVRALRSPEMMSFVSGLETLLEAFAQRRKIETADVGAALAASLISRPTVEGKGSGEAAAETTLLVSLGPSPFHRLLLHALCQYWRLRSRSEETGE--GRIVRVSTPPTSRKAFSLPDTFLAEFVFHARL 1166
+R TPQ+ S S L + + + + R G + G RKQ+RW ND+ G R ++ E H+ ++ WRS+ L Q+ + ++ R G + S R+ +W DAE+ F V++R R +++R+ S F+ +E ++ F Q R++ + A ++ P +E + E + L++ L S FHRL++H++CQ++ +RSR+E +I+ + +P A L L EF+ R+
Sbjct: 68 SRARTPQKRGSESPLARSKRLINIHSIRSAGYLSKPNELPVGVRKQQRWFNDHHFGN----RAASTRLEDLMEHMDINVEWRSNFQKLAEPQN---EELQTEFRQGGGARENRSNAP-------RNRRKDEWNDAEQMFTRVDRRARTLMLRSFNS--FAPFIEAVEYVVLHFIQWREVPSELEVATPLFRMLKHP-IELMRANEK--DMRLILPLMDSAFHRLIIHSVCQFYGVRSRTEANRRLSTKIMVLKSPKKKLAAVDLVQISLCEFIRETRI 326
BLAST of mRNA_F-serratus_M_contig883.20216.1 vs. uniprot
Match: A0A1W0A6V0_9STRA (R3H domain-containing protein (Fragment) n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A6V0_9STRA) HSP 1 Score: 71.6 bits (174), Expect = 1.560e-9 Identity = 61/248 (24.60%), Postives = 116/248 (46.77%), Query Frame = 3
Query: 462 GRRKQRRWENDNLIGVERFLRGRYSQEEGEASHLTVSHTWRSSLSVLVSDQSTSADVIEARERVRNGLQPKHSAGQGIHNPGSRHFAGGKWADAEERFVLVEKRLRDVVVRALRSPEMMSFVSGLETLLEAFAQRRK-IETADVGAALAASLISRPTV--------EGKGSGEAAA-----ETTLLVSLGPSPFHRLLLHALCQYWRLRSRS--EETGEGRIVRVSTPPTSRKAFSLPDTFLAEFVFH 1157
GRR Q R+ ND+ G R + E H+ +S W+S+ L ++ E + R+ +P H+ N R +W +AEE F+ +++R R ++ ++ S M++++ +E ++ F + + I T ++ LA+ L +V E + + +T LL+ L S +HRLL+HA+CQ++ L S+S ++T + +++ + P + D L E+ H
Sbjct: 92 GRRTQNRYFNDHHFGN----RAATASLEELMEHMQISVEWKSNFQKLARPENE-----EIADAFRSVKEPSHARSNSNQNKTHRAIRKDQWQEAEEMFMRIDQRARTILSKSFES--MVAYIEAIEDVIVHFVKWNEVISTIEIAPFLASMLSGEMSVVETTPLVRETRAASSRTRPSKHKDTVLLLPLVESSYHRLLIHAVCQFYGLHSKSNYDQTRKTKVLLIRRPARRHHHAGI-DISLCEYFLH 327
BLAST of mRNA_F-serratus_M_contig883.20216.1 vs. uniprot
Match: A0A0P1ADC5_PLAHL (Uncharacterized protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1ADC5_PLAHL) HSP 1 Score: 72.0 bits (175), Expect = 1.680e-9 Identity = 70/260 (26.92%), Postives = 118/260 (45.38%), Query Frame = 3
Query: 303 SVNTGAGRAHTPLRGNRTHTPQRPRSSSLLHTAAAPVQVATPRGEGDARRQLRGRRKQRRWENDNLIGVERFLRGRYSQEEGEASHLTVSHTWRSSLSVLVSDQSTSADVIEARERVRNGLQPKHSAGQGI------HNPGSRHFAGGKWADAEERFVLVEKRLRDVVVRALRSPEMMSFVSGLETLLEAFAQRRKIETADVGAALAASLISRPTVEGKGSGEAAAETTLLVSLGPSPFHRLLLHALCQYWRLRSRSEET 1064
S G+ RA TP + + +R + +H +P + P G RKQ+RW ND+ G R ++ E HL ++ W+S+ L Q+ S LQ K G G H P +R + +W DAE+ F V++R R +++R+ S F+ +E ++ F Q R++ + AA ++ P + S + L++ L S FHRL++H++CQ++ +RSR+E T
Sbjct: 65 SNGNGSSRARTPQKRSSNSPLERSKRLINIHPICSPSYLIKPNILP------LGVRKQQRWFNDHHFGN----RAASTRLEDLLEHLDINVEWKSNFKKLAEPQNES-------------LQKKFLNGGGAYESIQSHAPWNRRY--DEWNDAEQMFTRVDRRARTLMLRSFNS--FAPFIEAVEYVVLHFIQWREVPSELEVAAPLTRMLKHPIELIQASEN---DVRLILPLLDSAFHRLIVHSVCQFYGVRSRTEST 294
BLAST of mRNA_F-serratus_M_contig883.20216.1 vs. uniprot
Match: G4YQC7_PHYSP (R3H domain-containing protein n=7 Tax=Phytophthora TaxID=4783 RepID=G4YQC7_PHYSP) HSP 1 Score: 71.6 bits (174), Expect = 2.270e-9 Identity = 76/305 (24.92%), Postives = 137/305 (44.92%), Query Frame = 3
Query: 276 ADDSL---ETVASVNTGAGRAHTPLRGNRTHTPQRPRSSSLLHTAAAPVQVATPRGEGDARRQLR---GRRKQRRWENDNLIGVERFLRGRYSQEEGEASHLTVSHTWRSSLSVLVSDQSTSADVIEARERVRNGLQPKHSAGQGIHNPGSRHFAGGKWADAEERFVLVEKRLRDVVVRALRSPEMMSFVSGLETLLEAFAQRRKIETADVGAALAASLISRPTVEGKGSGEAAAETTLLVSLGPSPFHRLLLHALCQYWRLRSRSEETGE--GRIVRVSTPPTSRKAFSLPDTFLAEFVFHARL 1166
ADD T+A+V + + +R TPQ+ S S L + + + R G + G RKQ+RW ND+ G R ++ E H+ ++ WRS+ L Q+ + ++ R G Q + H P +R +W +AE+ F V++R R +++R+ S F+ +E ++ F Q R++ + A ++ P + S + + L++ L S FHRL++H++CQ++ +RSR+E +I+ + +P L L EF+ R+
Sbjct: 47 ADDGAAKKSTIAAVQRSSSNGNG---SSRARTPQKRGSESPLARSKRLINIHPIRSAGYLSKPNELPVGVRKQQRWFNDHHFGN----RAASTRLEDLMEHMDINVEWRSNFQKLAEPQN---EDLQTEFRKGGGAQENNRP----HAPRNRRK--DEWNEAEQMFTRVDRRARTLMLRSFNS--FAPFIEAVEYVVLHFIQWREVPSELEVATPLFRMLKHPIELMRASEK---DVRLILPLLDSAFHRLIVHSVCQFYGVRSRTEANRRLNTKIMVLKSPKKKLSPDDLAQISLCEFIRETRM 330 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig883.20216.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 24
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig883.20216.1 >prot_F-serratus_M_contig883.20216.1 ID=prot_F-serratus_M_contig883.20216.1|Name=mRNA_F-serratus_M_contig883.20216.1|organism=Fucus serratus male|type=polypeptide|length=393bp MSTYSSNFRARGVSFDEGPLLVARHDPIPVAAAEDQDHTPTIVGLLYHSPback to top mRNA from alignment at F-serratus_M_contig883:158882..171586+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig883.20216.1 ID=mRNA_F-serratus_M_contig883.20216.1|Name=mRNA_F-serratus_M_contig883.20216.1|organism=Fucus serratus male|type=mRNA|length=12705bp|location=Sequence derived from alignment at F-serratus_M_contig883:158882..171586+ (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig883:158882..171586+ >mRNA_F-serratus_M_contig883.20216.1 ID=mRNA_F-serratus_M_contig883.20216.1|Name=mRNA_F-serratus_M_contig883.20216.1|organism=Fucus serratus male|type=CDS|length=2358bp|location=Sequence derived from alignment at F-serratus_M_contig883:158882..171586+ (Fucus serratus male)back to top |