mRNA_F-serratus_M_contig883.20214.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig883.20214.1
Unique NamemRNA_F-serratus_M_contig883.20214.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig883.20214.1 vs. uniprot
Match: A0A343C617_FUCDI (Ribosomal protein S12 n=3 Tax=Fucus TaxID=3011 RepID=A0A343C617_FUCDI)

HSP 1 Score: 245 bits (625), Expect = 4.890e-82
Identity = 122/124 (98.39%), Postives = 123/124 (99.19%), Query Frame = 1 
Query:    1 MSRPNISQWVKRCLGKKITKIKSVGLKGCPQKKGVCLRVFICSPKKPNSARRKVVKVRLSNKIRLTAYIPGQVHRLQEHSQVLVRGGRIPDLPGVKYRLVRNKFDLDGLSGRKTGRSKYGTKKG 372
            MSRPNISQWVKRC GKKITKIKSVGLKGCPQKKGVCLR+FICSPKKPNSARRKVVKVRLSNKIRLTAYIPGQVHRLQEHSQVLVRGGRIPDLPGVKYRLVRNKFDLDGLSGRKTGRSKYGTKKG
Sbjct:    1 MSRPNISQWVKRCQGKKITKIKSVGLKGCPQKKGVCLRIFICSPKKPNSARRKVVKVRLSNKIRLTAYIPGQVHRLQEHSQVLVRGGRIPDLPGVKYRLVRNKFDLDGLSGRKTGRSKYGTKKG 124
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BLAST of mRNA_F-serratus_M_contig883.20214.1 vs. uniprot
Match: A0A1L2F1H2_9PHAE (Ribosomal protein S12 n=1 Tax=Coccophora langsdorfii TaxID=74099 RepID=A0A1L2F1H2_9PHAE)

HSP 1 Score: 224 bits (572), Expect = 5.920e-74
Identity = 108/123 (87.80%), Postives = 118/123 (95.93%), Query Frame = 1 
Query:    1 MSRPNISQWVKRCLGKKITKIKSVGLKGCPQKKGVCLRVFICSPKKPNSARRKVVKVRLSNKIRLTAYIPGQVHRLQEHSQVLVRGGRIPDLPGVKYRLVRNKFDLDGLSGRKTGRSKYGTKK 369
            MSRPNI+QWVK+C G KITK +SVGL+GCPQKKGVCL+VF+CSPKKPNSARRKVVKVRL+N+IRLTAYIPGQ+HRLQEHSQVLVRGGRIPDLPGVKYRLVRNKFDL+GL GRKT RSKYGTKK
Sbjct:    1 MSRPNITQWVKKCQGNKITKKRSVGLRGCPQKKGVCLKVFVCSPKKPNSARRKVVKVRLANRIRLTAYIPGQIHRLQEHSQVLVRGGRIPDLPGVKYRLVRNKFDLEGLGGRKTARSKYGTKK 123
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BLAST of mRNA_F-serratus_M_contig883.20214.1 vs. uniprot
Match: A0A8F0FDA5_9PHAE (Ribosomal protein S12 n=1 Tax=Analipus japonicus TaxID=31333 RepID=A0A8F0FDA5_9PHAE)

HSP 1 Score: 222 bits (565), Expect = 6.470e-73
Identity = 109/124 (87.90%), Postives = 116/124 (93.55%), Query Frame = 1 
Query:    1 MSRPNISQWVKRCLGKKITKIKSVGLKGCPQKKGVCLRVFICSPKKPNSARRKVVKVRLSNKIRLTAYIPGQVHRLQEHSQVLVRGGRIPDLPGVKYRLVRNKFDLDGLSGRKTGRSKYGTKKG 372
            MSRPNI+QW+KRC  KK TK KSVGL+GCPQKKGVCL+VF+CSPKKPNSARRKVVKVRLSNK+RLTAYIPGQ HRLQEHSQVLVRGGRIPDLPGVKYRLVRNK DL+GL GRKT RSKYGTKKG
Sbjct:    1 MSRPNINQWLKRCQDKKRTKPKSVGLRGCPQKKGVCLKVFVCSPKKPNSARRKVVKVRLSNKVRLTAYIPGQTHRLQEHSQVLVRGGRIPDLPGVKYRLVRNKLDLEGLLGRKTARSKYGTKKG 124
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BLAST of mRNA_F-serratus_M_contig883.20214.1 vs. uniprot
Match: A0A7U1G3H6_9PHAE (Ribosomal protein S12 n=3 Tax=Phaeophyceae TaxID=2870 RepID=A0A7U1G3H6_9PHAE)

HSP 1 Score: 218 bits (556), Expect = 1.630e-71
Identity = 106/123 (86.18%), Postives = 116/123 (94.31%), Query Frame = 1 
Query:    1 MSRPNISQWVKRCLGKKITKIKSVGLKGCPQKKGVCLRVFICSPKKPNSARRKVVKVRLSNKIRLTAYIPGQVHRLQEHSQVLVRGGRIPDLPGVKYRLVRNKFDLDGLSGRKTGRSKYGTKK 369
            MSRPNI+QW  +  GKK TK+KSVGL+GCPQK+GVCL+VFICSPKKPNSARRKVVKVRLSNK++LTAYIPGQVHRLQEHSQVLVRGGRIPDLPGVKYRL+RNK DL+GLSGRKT RSKYGTKK
Sbjct:    1 MSRPNINQWFNKSHGKKQTKVKSVGLRGCPQKRGVCLKVFICSPKKPNSARRKVVKVRLSNKVKLTAYIPGQVHRLQEHSQVLVRGGRIPDLPGVKYRLIRNKLDLEGLSGRKTSRSKYGTKK 123
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BLAST of mRNA_F-serratus_M_contig883.20214.1 vs. uniprot
Match: A0A4D6E517_9PHAE (Ribosomal protein S12 n=10 Tax=Laminariales TaxID=2886 RepID=A0A4D6E517_9PHAE)

HSP 1 Score: 214 bits (545), Expect = 7.750e-70
Identity = 102/123 (82.93%), Postives = 114/123 (92.68%), Query Frame = 1 
Query:    1 MSRPNISQWVKRCLGKKITKIKSVGLKGCPQKKGVCLRVFICSPKKPNSARRKVVKVRLSNKIRLTAYIPGQVHRLQEHSQVLVRGGRIPDLPGVKYRLVRNKFDLDGLSGRKTGRSKYGTKK 369
            MSRPN +QW  +  GKK TK+KSVGL+GCPQK+G+CL+VF+CSPKKPNSARRKVVKVRLSNK++LTAYIPGQVHRLQEHSQVLVRGGRIPDLPGVKYRL+RNK DL+GL GRKT RSKYGTKK
Sbjct:    1 MSRPNTNQWFNKSQGKKQTKVKSVGLRGCPQKRGICLKVFVCSPKKPNSARRKVVKVRLSNKVKLTAYIPGQVHRLQEHSQVLVRGGRIPDLPGVKYRLIRNKLDLEGLPGRKTSRSKYGTKK 123
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BLAST of mRNA_F-serratus_M_contig883.20214.1 vs. uniprot
Match: A0A8E8PDL4_9PHAE (Ribosomal protein S12 n=1 Tax=Phaeophyceae sp. TaxID=2249243 RepID=A0A8E8PDL4_9PHAE)

HSP 1 Score: 214 bits (544), Expect = 9.980e-70
Identity = 100/123 (81.30%), Postives = 116/123 (94.31%), Query Frame = 1 
Query:    1 MSRPNISQWVKRCLGKKITKIKSVGLKGCPQKKGVCLRVFICSPKKPNSARRKVVKVRLSNKIRLTAYIPGQVHRLQEHSQVLVRGGRIPDLPGVKYRLVRNKFDLDGLSGRKTGRSKYGTKK 369
            MSRPN++QW  +C G++++K +SVGL+GCPQK+GVCL+VFICSP+KPNSARRKV+KVRLSNK+RLTAYIPGQVHRLQEHSQVLVRGGRIPDLPGVKYR +RNK DLDGL+GRKT RSKYGTKK
Sbjct:    1 MSRPNLNQWAYKCQGERLSKPRSVGLRGCPQKRGVCLKVFICSPRKPNSARRKVIKVRLSNKVRLTAYIPGQVHRLQEHSQVLVRGGRIPDLPGVKYRCIRNKLDLDGLAGRKTSRSKYGTKK 123
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BLAST of mRNA_F-serratus_M_contig883.20214.1 vs. uniprot
Match: D0IPT7_SACAN (Ribosomal protein S12 n=44 Tax=Phaeophyceae TaxID=2870 RepID=D0IPT7_SACAN)

HSP 1 Score: 214 bits (544), Expect = 1.100e-69
Identity = 103/123 (83.74%), Postives = 114/123 (92.68%), Query Frame = 1 
Query:    1 MSRPNISQWVKRCLGKKITKIKSVGLKGCPQKKGVCLRVFICSPKKPNSARRKVVKVRLSNKIRLTAYIPGQVHRLQEHSQVLVRGGRIPDLPGVKYRLVRNKFDLDGLSGRKTGRSKYGTKK 369
            MSRPNI+QW  +  GKK T+ KSVGL+GCPQK+GVCL+VF+CSPKKPNSARRKVVKVRLSNK++LTAYIPGQVHRLQEHSQVLVRGGRIPDLPGVKYRL+RNK DL+GL GRKT RSKYGTKK
Sbjct:    1 MSRPNINQWFNKSQGKKQTRAKSVGLRGCPQKRGVCLKVFVCSPKKPNSARRKVVKVRLSNKVKLTAYIPGQVHRLQEHSQVLVRGGRIPDLPGVKYRLIRNKLDLEGLPGRKTSRSKYGTKK 123
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BLAST of mRNA_F-serratus_M_contig883.20214.1 vs. uniprot
Match: A0A0U1Z5R7_9PHAE (Ribosomal protein S12 n=21 Tax=Sargassaceae TaxID=3014 RepID=A0A0U1Z5R7_9PHAE)

HSP 1 Score: 213 bits (542), Expect = 2.220e-69
Identity = 106/123 (86.18%), Postives = 112/123 (91.06%), Query Frame = 1 
Query:    1 MSRPNISQWVKRCLGKKITKIKSVGLKGCPQKKGVCLRVFICSPKKPNSARRKVVKVRLSNKIRLTAYIPGQVHRLQEHSQVLVRGGRIPDLPGVKYRLVRNKFDLDGLSGRKTGRSKYGTKK 369
            MSRPNI QW K+  G K  K KSVGL+GCPQKKGVCL+VF+CSPKKPNSARRKVVKVRLSNKIRLTAYIPGQ+HRLQEHSQVL+RGGRIPDLPGVKYRLVRNK DL GLSGRKT RSKYGTKK
Sbjct:    1 MSRPNIIQWFKKSNGTKKKKKKSVGLRGCPQKKGVCLKVFVCSPKKPNSARRKVVKVRLSNKIRLTAYIPGQIHRLQEHSQVLIRGGRIPDLPGVKYRLVRNKLDLGGLSGRKTARSKYGTKK 123
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BLAST of mRNA_F-serratus_M_contig883.20214.1 vs. uniprot
Match: Q2TUG4_9PHAE (Ribosomal protein S12 n=2 Tax=Desmarestia TaxID=31339 RepID=Q2TUG4_9PHAE)

HSP 1 Score: 212 bits (540), Expect = 4.060e-69
Identity = 105/123 (85.37%), Postives = 116/123 (94.31%), Query Frame = 1 
Query:    1 MSRPNISQWVKRCLGKKITKIKSVGLKGCPQKKGVCLRVFICSPKKPNSARRKVVKVRLSNKIRLTAYIPGQVHRLQEHSQVLVRGGRIPDLPGVKYRLVRNKFDLDGLSGRKTGRSKYGTKK 369
            MSRP I+QW KR  GKKI+++KSVGL+GCPQK+GVCL+VF+ SPKKPNSARRKVVK+RLSNK+RLTAYIPGQVHRLQEHSQVLVRGGRIPDLPGVKYRLVRNK DL+GLSGRKT RSKYGTKK
Sbjct:    1 MSRPTINQWFKR-QGKKISRVKSVGLRGCPQKRGVCLKVFVSSPKKPNSARRKVVKIRLSNKVRLTAYIPGQVHRLQEHSQVLVRGGRIPDLPGVKYRLVRNKLDLEGLSGRKTSRSKYGTKK 122
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BLAST of mRNA_F-serratus_M_contig883.20214.1 vs. uniprot
Match: A0A3G5FPN2_9PHAE (Ribosomal protein S12 n=4 Tax=Ectocarpales TaxID=2877 RepID=A0A3G5FPN2_9PHAE)

HSP 1 Score: 211 bits (536), Expect = 2.220e-68
Identity = 102/123 (82.93%), Postives = 113/123 (91.87%), Query Frame = 1 
Query:    1 MSRPNISQWVKRCLGKKITKIKSVGLKGCPQKKGVCLRVFICSPKKPNSARRKVVKVRLSNKIRLTAYIPGQVHRLQEHSQVLVRGGRIPDLPGVKYRLVRNKFDLDGLSGRKTGRSKYGTKK 369
            MSRPNI+QW K    K++TK KSVGLKGCPQK+GVCL+VF+CSPKKPNSARRKVVKVRLSNK++LTAYIPGQVHRLQEHSQVLVRGGR+PDLPGVKYRL+RNK DL+GL  RKT RSKYGTKK
Sbjct:    1 MSRPNINQWFKNKKTKRLTKSKSVGLKGCPQKRGVCLKVFVCSPKKPNSARRKVVKVRLSNKVKLTAYIPGQVHRLQEHSQVLVRGGRVPDLPGVKYRLIRNKLDLEGLPDRKTSRSKYGTKK 123
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig883.20214.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A343C617_FUCDI4.890e-8298.39Ribosomal protein S12 n=3 Tax=Fucus TaxID=3011 Rep... [more]
A0A1L2F1H2_9PHAE5.920e-7487.80Ribosomal protein S12 n=1 Tax=Coccophora langsdorf... [more]
A0A8F0FDA5_9PHAE6.470e-7387.90Ribosomal protein S12 n=1 Tax=Analipus japonicus T... [more]
A0A7U1G3H6_9PHAE1.630e-7186.18Ribosomal protein S12 n=3 Tax=Phaeophyceae TaxID=2... [more]
A0A4D6E517_9PHAE7.750e-7082.93Ribosomal protein S12 n=10 Tax=Laminariales TaxID=... [more]
A0A8E8PDL4_9PHAE9.980e-7081.30Ribosomal protein S12 n=1 Tax=Phaeophyceae sp. Tax... [more]
D0IPT7_SACAN1.100e-6983.74Ribosomal protein S12 n=44 Tax=Phaeophyceae TaxID=... [more]
A0A0U1Z5R7_9PHAE2.220e-6986.18Ribosomal protein S12 n=21 Tax=Sargassaceae TaxID=... [more]
Q2TUG4_9PHAE4.060e-6985.37Ribosomal protein S12 n=2 Tax=Desmarestia TaxID=31... [more]
A0A3G5FPN2_9PHAE2.220e-6882.93Ribosomal protein S12 n=4 Tax=Ectocarpales TaxID=2... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig883contigF-serratus_M_contig883:127476..127853 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score147.9
Seed ortholog evalue3.2e-33
Seed eggNOG ortholog1449069.JMLO01000005_gene1396
Preferred namerpsL
KEGG koko:K02950
KEGG Pathwayko03010,map03010
KEGG ModuleM00178,M00179
Hectar predicted targeting categoryother localisation
GOsGO:0000372,GO:0000375,GO:0000376,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006139,GO:0006396,GO:0006412,GO:0006518,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008380,GO:0009058,GO:0009059,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010604,GO:0010628,GO:0015935,GO:0016070,GO:0019219,GO:0019222,GO:0019538,GO:0019843,GO:0022626,GO:0022627,GO:0031323,GO:0031325,GO:0032991,GO:0033120,GO:0034336,GO:0034337,GO:0034641,GO:0034645,GO:0040007,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043484,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045935,GO:0046483,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0060255,GO:0065007,GO:0071704,GO:0080090,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990145,GO:1990904
EggNOG free text desc.Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit
EggNOG OGs2IHUF@201174,4G0GJ@85025,COG0048@1,COG0048@2
COG Functional cat.J
Best tax levelNocardiaceae
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Exons1
Model size378
Cds size378
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932573.0809708-CDS-F-serratus_M_contig883:127475..1278531622932573.0809708-CDS-F-serratus_M_contig883:127475..127853Fucus serratus maleCDSF-serratus_M_contig883 127476..127853 -
1690964372.396263-CDS-F-serratus_M_contig883:127475..1278531690964372.396263-CDS-F-serratus_M_contig883:127475..127853Fucus serratus maleCDSF-serratus_M_contig883 127476..127853 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig883.20214.1prot_F-serratus_M_contig883.20214.1Fucus serratus malepolypeptideF-serratus_M_contig883 127476..127853 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig883.20214.1

>prot_F-serratus_M_contig883.20214.1 ID=prot_F-serratus_M_contig883.20214.1|Name=mRNA_F-serratus_M_contig883.20214.1|organism=Fucus serratus male|type=polypeptide|length=126bp
MSRPNISQWVKRCLGKKITKIKSVGLKGCPQKKGVCLRVFICSPKKPNSA
RRKVVKVRLSNKIRLTAYIPGQVHRLQEHSQVLVRGGRIPDLPGVKYRLV
RNKFDLDGLSGRKTGRSKYGTKKGF*
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mRNA from alignment at F-serratus_M_contig883:127476..127853-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig883.20214.1 ID=mRNA_F-serratus_M_contig883.20214.1|Name=mRNA_F-serratus_M_contig883.20214.1|organism=Fucus serratus male|type=mRNA|length=378bp|location=Sequence derived from alignment at F-serratus_M_contig883:127476..127853- (Fucus serratus male)
ATGTCCAGACCAAATATTAGTCAATGGGTTAAAAGATGCCTAGGTAAAAA
GATAACAAAAATAAAAAGTGTAGGTCTGAAAGGTTGTCCTCAGAAAAAGG
GTGTTTGTTTAAGGGTATTTATTTGTTCGCCTAAAAAACCTAATTCGGCT
CGTCGTAAGGTCGTTAAAGTACGTTTATCCAATAAAATAAGATTAACCGC
GTATATTCCGGGACAGGTTCATAGATTGCAAGAGCATTCTCAAGTTTTAG
TTAGAGGGGGTCGAATTCCGGATTTGCCCGGGGTTAAATACCGTTTAGTC
CGCAATAAGTTTGATTTAGATGGTTTGTCTGGGCGTAAAACAGGTAGATC
TAAATATGGTACAAAGAAAGGGTTTTAA
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Coding sequence (CDS) from alignment at F-serratus_M_contig883:127476..127853-

>mRNA_F-serratus_M_contig883.20214.1 ID=mRNA_F-serratus_M_contig883.20214.1|Name=mRNA_F-serratus_M_contig883.20214.1|organism=Fucus serratus male|type=CDS|length=756bp|location=Sequence derived from alignment at F-serratus_M_contig883:127476..127853- (Fucus serratus male)
ATGTCCAGACCAAATATTAGTCAATGGGTTAAAAGATGCCTAGGTAAAAA
GATAACAAAAATAAAAAGTGTAGGTCTGAAAGGTTGTCCTCAGAAAAAGG
GTGTTTGTTTAAGGGTATTTATTTGTTCGCCTAAAAAACCTAATTCGGCT
CGTCGTAAGGTCGTTAAAGTACGTTTATCCAATAAAATAAGATTAACCGC
GTATATTCCGGGACAGGTTCATAGATTGCAAGAGCATTCTCAAGTTTTAG
TTAGAGGGGGTCGAATTCCGGATTTGCCCGGGGTTAAATACCGTTTAGTC
CGCAATAAGTTTGATTTAGATGGTTTGTCTGGGCGTAAAACAGGTAGATC
TAAATATGGTACAAAGAAAGGGTTTTAAATGTCCAGACCAAATATTAGTC
AATGGGTTAAAAGATGCCTAGGTAAAAAGATAACAAAAATAAAAAGTGTA
GGTCTGAAAGGTTGTCCTCAGAAAAAGGGTGTTTGTTTAAGGGTATTTAT
TTGTTCGCCTAAAAAACCTAATTCGGCTCGTCGTAAGGTCGTTAAAGTAC
GTTTATCCAATAAAATAAGATTAACCGCGTATATTCCGGGACAGGTTCAT
AGATTGCAAGAGCATTCTCAAGTTTTAGTTAGAGGGGGTCGAATTCCGGA
TTTGCCCGGGGTTAAATACCGTTTAGTCCGCAATAAGTTTGATTTAGATG
GTTTGTCTGGGCGTAAAACAGGTAGATCTAAATATGGTACAAAGAAAGGG
TTTTAA
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