mRNA_F-serratus_M_contig882.20201.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig882.20201.1 vs. uniprot
Match: D7G2R4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G2R4_ECTSI) HSP 1 Score: 380 bits (975), Expect = 6.080e-125 Identity = 186/287 (64.81%), Postives = 221/287 (77.00%), Query Frame = 2
Query: 107 HNGNGNGKKAGVVVDARPLPRSDAA----RIIR-RACVLSACGLTALGCHRIGAPVLARSSVTIGYLVACLPYLLRTSKYRQDSSLGCVMEDGDRRRPVTDILVWTSLVYMVPAGYGIMVHQYGIAGLQVLTTVGSTLFHLARETKYFNLDNVFATSLLNTTLWGFYLGVKHGIWWYVATIGLAGPSAIFFIVRCGMPGLVCQHPSGRGLCRKSNPEYTTFHMLWHLASGSITLVTIHFFATNFPGLEAGGGWFRECPDLPVVPTVSLAASALINFIGNYVGIMPID 952
H G+G G G V L R+ + R+ R RACVL+ + AL CHR+G+ LAR TIG LVACLP+LLR+SKYR+D LGC++E GD+RRP+TD+LVWTS VY +P+ YG+ HQYGIAGLQ++TT+GSTLFHL RETK+FNLDNVFATSLL+TT W YLGV HG+WWYV IGL GP AIF IVRCGMPGLVC+HP+G GLCR+SNPEY FHMLWHL+SG TL+TIHFF FP EAGGGWF PD+PVVPTV+LA SALIN GN VG+MP++
Sbjct: 94 HGGDGGG---GAVAPPERLSRASGSSAENRVHRKRACVLAWWIVGALICHRLGSMTLARVFATIGSLVACLPHLLRSSKYRRDRGLGCLLETGDKRRPLTDMLVWTSFVYCLPSVYGLYAHQYGIAGLQLMTTIGSTLFHLTRETKFFNLDNVFATSLLSTTAWSLYLGVTHGVWWYVVVIGLGGPFAIFCIVRCGMPGLVCRHPAGSGLCRRSNPEYDFFHMLWHLSSGLGTLITIHFFEVYFPAEEAGGGWFYFFPDVPVVPTVALALSALINLYGNRVGVMPLE 377
BLAST of mRNA_F-serratus_M_contig882.20201.1 vs. uniprot
Match: A0A835Z7G3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7G3_9STRA) HSP 1 Score: 248 bits (634), Expect = 1.870e-73 Identity = 123/224 (54.91%), Postives = 152/224 (67.86%), Query Frame = 2
Query: 281 IGYLVACLPYLLRTSKYRQDSSLGCVMEDGDRRRPVTDILVWTSLVYMVPAGYGIMVHQYGIAGLQVLTTVGSTLFHLARETKYFNLDNVFATSLLNTTLWGFYLGVKHGIWWYVATIGLAGPSAIFFIVRCGMPGLVCQHPSGRGLCRK-SNPEYTTFHMLWHLASGSITLVTIHFFATNFPGLEAGGGWFRECPDLPVVPTVSLAASALINFIGNYVGIMPI 949
+G A PYLLR+S+YR+D L C + D RR + D LVWTSLVY VPA YG+ HQYG+A LQ TTVGSTLFH ARET+YFNLDNV A +LL TT W L + +W + A + P A +F+V CGMPG+VC PSG G R+ SNP Y +HMLWHL SG T+ +IHFFA+ +P L+AGGG F PD+PVVP VSL SA +N GN+ G +P+
Sbjct: 189 LGLGCALSPYLLRSSRYRRDPRLRCRLGRRDVRRRLRDPLVWTSLVYAVPALYGVAAHQYGVAALQAATTVGSTLFHRARETRYFNLDNVGALALLFTTAWSLALAARARVWAHAAVVLAGTPLAGYFMVACGMPGVVCACPSGDGTLRRASNPLYDHYHMLWHLVSGFGTIASIHFFASRYPHLDAGGGHFEHFPDVPVVPFVSLLLSAAVNVYGNWAGALPL 412
BLAST of mRNA_F-serratus_M_contig882.20201.1 vs. uniprot
Match: A0A7S2XVH3_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XVH3_9STRA) HSP 1 Score: 188 bits (478), Expect = 7.050e-52 Identity = 101/230 (43.91%), Postives = 136/230 (59.13%), Query Frame = 2
Query: 263 ARSSVTIGYLVACLPYLLRTSKYRQDSSLGCVMEDGDRRRPVTDILVWTSLVYMVPAGYGIMVHQYGIAGLQVLTTVGSTLFHLARETKYFNLDNVFATSLLNTTLWGFYLGVKHGIWWYV-ATIGLAGPSAIFFIVRCGMPGLVCQHPSGRGLCRKSNPEYTTFHMLWHLASGSITLVTIHFFATNFPGLEAGGGWFRECPDLPVVPTVSLAASALINFIGNYVGIMPI 949
AR L +PYL + S R D S G + ++RR D LV+TSL YM Y V QYGIA LQ+ T++GSTL+HL RET +FN DN+ ATSLL T +G YL + + W + A G+ AI +CGMPG VC+ G+ C EY ++H WH+AS T+++++FF NFP EAG GWF E P LP+ PT+++ S + NFIGN G+MP+
Sbjct: 83 ARLVTLFSILFMGIPYLAKASPLRSDPSRGIKLSPKEKRRSFADPLVFTSLFYMFAGIYAFSVGQYGIALLQIYTSMGSTLYHLTRETMFFNCDNIGATSLLLLTAYGLYLSLGIDLGWTILAAAGIPLGGAILH--KCGMPGEVCK---GKRTCCS---EYPSWHSAWHVASSFGTVISVYFFEKNFPDHEAGAGWFAEMPFLPIAPTIAVVISVVQNFIGNKAGVMPL 304
BLAST of mRNA_F-serratus_M_contig882.20201.1 vs. uniprot
Match: A0A7S1XWR7_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XWR7_9STRA) HSP 1 Score: 137 bits (344), Expect = 3.000e-33 Identity = 86/235 (36.60%), Postives = 119/235 (50.64%), Query Frame = 2
Query: 263 ARSSVTIGYLVACLPYLLRTSKYRQD-SSLG---CVMEDGDRRRPVTDILVWTSLV-YMVPAGYGIMVHQYGIAGLQVLTTVGSTLFHLARETKYFNLDNVFATSLLNTTLWGFYLGVKHGIWWYVATIGLAGPSAIFFIVRCGMPGLVCQHPSGRGLCRKSNPEYTTFHMLWHLASGSITLVTIHFFATNFPGLEAGGGWFRECPDLPVVPTVSLAASALINFIGNYVGIMPID 952
AR + L+ LPYL R S YR+D G C++ D R V D+ VW+S V + PA Y + Q+ + LQ+ + S L+HL+RET +FN+DNVF SL T L G+ WYV L P A F +V C PG+V + G R ++ Y +H +WH ASG +TL+ +F T P E G G P V S+ S +N +GN G+MP+D
Sbjct: 23 ARVAAGATALLPLLPYLGRASVYREDPGGRGQGFCLLRPEDCWRSVGDVQVWSSWVCFGGPALYSFLSAQWSLGALQLGAAITSGLYHLSRETLFFNVDNVFGLSLGCTVFVAVKLAWDRGVMWYVIVNVLVLPVAGFLLVYCDFPGVVVRQ--GEKARRLAHERYDFWHAVWHAASGVVTLLNTYFLVTYVPESECGAGMEPWFPYPSTVAFWSVLLSIGVNLVGNLAGVMPVD 255
BLAST of mRNA_F-serratus_M_contig882.20201.1 vs. uniprot
Match: A0A7S3HNL6_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HNL6_9STRA) HSP 1 Score: 107 bits (266), Expect = 3.710e-22 Identity = 83/244 (34.02%), Postives = 125/244 (51.23%), Query Frame = 2
Query: 275 VTIGYLV-ACLPYLLRTSKYRQDSSLGCVMEDGDRRRPVTDILVWTSLVYMVPAGYGIMVHQYGIAGLQVLTTVGSTLFHLARETKYFNLDNVFATSLLNT---TLWGFYLGVKHGIWWYVATIGLAGPSAIFFIVRCGMPG-----------LVCQHPSGRGLCRKSNPEYTTFHMLWHLASGSITLVTI---HFFATNFPGLEAGGGWFRECPDLPVVPTVSLAASALINFIGNYVGIMPID 952
V + Y++ A PYL + SK+R+ S +G V + + D L+ TS Y++ A + Q+ IA + +T +GS+L+H RE ++FNLDN+FATSLL T TL Y H I++ + +GL P+A+F IV CGMP +VC +GR L Y T H LWHLAS + + HF A + + + + +P ++L+ S N GN GIMP++
Sbjct: 66 VLVSYMISAFFPYLRKPSKHRR-SFVGSVDRNWN------DQLMTTSSSYLLSAVFAFSYGQFEIALICFITYIGSSLYHRHREMEFFNLDNIFATSLLFTCVYTLVSSYF--THEIYFIIGLMGL--PTAMFLIVYCGMPADIRFKDIPGLEVVCCVRTGREL-------YDTVHALWHLASSVGPCMAVWYFHFKANEYDKTDMSDLNKLDDQIISRLPYLALSLSIFANIAGNIDGIMPLE 291
BLAST of mRNA_F-serratus_M_contig882.20201.1 vs. uniprot
Match: A0A7S3XR67_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XR67_HETAK) HSP 1 Score: 103 bits (256), Expect = 5.510e-21 Identity = 58/144 (40.28%), Postives = 84/144 (58.33%), Query Frame = 2
Query: 260 LARSSVTIGYLVACLPYLLRTSKYRQDSSLGCVMEDGDRRRPVTDILVWTSLVYMVPAGYGIMVHQYGIAGLQVLTTVGSTLFHLARETKYFNLDNVFATSLLNTTLWGFYLGVKHGIWWYVATI-GLAGPSAIFFIVRCGMPG 688
LA + L+ LPYLL+ S R+D S+G + + D RP++D LV+TSL+Y +P Y + + + L + T+ GST+FHL RET +FN DN+ A +L+ +GFYL + + W A I GL P F + CGMPG
Sbjct: 90 LAELTAMCAVLLYILPYLLKPSILRRDKSIGVNLTEEDLWRPISDPLVYTSLLYALPGLYALYYNMPFLGILHLYTSFGSTMFHLTRETMFFNWDNIGAMALMLIACFGFYLSLGTDMIWTAAAITGL--PIGAFLLAYCGMPG 231 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig882.20201.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig882.20201.1 >prot_F-serratus_M_contig882.20201.1 ID=prot_F-serratus_M_contig882.20201.1|Name=mRNA_F-serratus_M_contig882.20201.1|organism=Fucus serratus male|type=polypeptide|length=307bp MAASSQVAEQADKPSQNGTAPSADHNGNGNGKKAGVVVDARPLPRSDAARback to top mRNA from alignment at F-serratus_M_contig882:165355..168979+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig882.20201.1 ID=mRNA_F-serratus_M_contig882.20201.1|Name=mRNA_F-serratus_M_contig882.20201.1|organism=Fucus serratus male|type=mRNA|length=3625bp|location=Sequence derived from alignment at F-serratus_M_contig882:165355..168979+ (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig882:165355..168979+ >mRNA_F-serratus_M_contig882.20201.1 ID=mRNA_F-serratus_M_contig882.20201.1|Name=mRNA_F-serratus_M_contig882.20201.1|organism=Fucus serratus male|type=CDS|length=1842bp|location=Sequence derived from alignment at F-serratus_M_contig882:165355..168979+ (Fucus serratus male)back to top |