mRNA_F-serratus_M_contig882.20194.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig882.20194.1
Unique NamemRNA_F-serratus_M_contig882.20194.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig882.20194.1 vs. uniprot
Match: A0A6H5K9L5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9L5_9PHAE)

HSP 1 Score: 209 bits (532), Expect = 1.160e-57
Identity = 161/353 (45.61%), Postives = 192/353 (54.39%), Query Frame = 2 
Query:    8 IFDEDTTREIKEEHTRDMEEAARAIGRHRMGFLTGN-----------IESEPAPS--GAGVMGRLSGIKSMFSFSRRQATPAPVHVSS-------AAGPPPVSAAKQRL-----------QSSPDPWPTNVALKDDPTVA----PRQSAGEERPVSKEEPAAA----------------RAAAGGPK--------------------------------------ASVQPVDPEIKVIPFEVREPSLGASVVGHVTVLEGSCYVWASTEGSAAQGSFAAAVGTRFDGGMPTATPLLDGSGGAEAGGGGISVSMAQRLCKRTGRVVFVSCDLSEDSQILVAAVEAKIVKVLKEE 799
            IFD  T+++I EEH RDME+AA+AIG   M  + G             +S  A S  G  ++ +L+   S FS   R+ TPAP   +        AA P P +   ++L           QSS     +N  L+  PTVA    P  +A  E P   EEP+AA                 AAAG P+                                      A  + V PE+K++ F+VREP+LGASVVGHV VL GSCYVWA+TEGS AQGS AAAVGTRFDGGMPTATPLL G G  EAG GG+ VSMAQRLCKRTGRVVFVSCDLSEDSQILVAAVEAK+V +LK E
Sbjct:   20 IFDAATSKKIHEEHQRDMEDAAKAIGPRGMALIRGLERQTMTATTRITQSLTAGSLHGGRLLRKLTPATSFFS---RKKTPAPTPAAEPVAGPKPAAAPAPTAPTLEQLLLAELHMATNAQSS-----SNATLEPPPTVAESGSPETAAPTETP--SEEPSAADDVDVGRKPPPVPASETAAAGEPEPARRLDAEGKGSVETARFTSRESAEPAPSPPAAAPTEDAGSEAVLPELKIVSFDVREPTLGASVVGHVVVLAGSCYVWATTEGSVAQGSLAAAVGTRFDGGMPTATPLLAGEGAGEAGEGGVGVSMAQRLCKRTGRVVFVSCDLSEDSQILVAAVEAKVVALLKAE 362
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BLAST of mRNA_F-serratus_M_contig882.20194.1 vs. uniprot
Match: D7G2Q5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2Q5_ECTSI)

HSP 1 Score: 205 bits (521), Expect = 3.780e-56
Identity = 153/353 (43.34%), Postives = 190/353 (53.82%), Query Frame = 2 
Query:    8 IFDEDTTREIKEEHTRDMEEAARAIGRHRMGFLTGNIESEPAPS--------------GAGVMGRLSGIKSMFSFSRRQA-TPA--PVHVSSAAGPPPVSAAKQRL-----QSSPDPWPTNVALKDDP----------TVAPRQSAGEERPVSKE-----------------------------EPAAARAAAGGPKASVQP----------------------------VDPEIKVIPFEVREPSLGASVVGHVTVLEGSCYVWASTEGSAAQGSFAAAVGTRFDGGMPTATPLLDGSGGAEAGGGGISVSMAQRLCKRTGRVVFVSCDLSEDSQILVAAVEAKIVKVLKEE 799
            IFD  T+++I EEH RDME+AA+AIG   M  + G +E +   +              G  ++ +L+   S+FS  +  A TPA  P+  S  A   P +   ++L       + +  P++ A  + P          T AP ++  EE P + +                             EP  AR      K SV+P                            V PE+KV+ F+VREP+LGASVVGHV VL GSCYVWA+TEGS AQGS AAAVGTRFDGGMPTATPLL G G  EAGGGG+ VSMAQRLCKRTGRVVFVSCDLSEDSQILVAAVEAK+V +LK E
Sbjct:    6 IFDAATSKKIHEEHQRDMEDAAKAIGPRGMALIRG-LEKQTTTATTRITQSLTAGSLHGGRLLRKLAPATSLFSRKKPPAPTPAAEPLAGSEPAAQAPTAPTLEQLLLAEIHMATNAQPSSAATLELPPAVAESGSPETAAPTETTPEEPPAADDVGDVGRKPPPVPASXXXXXXXXXXXXXXGEPEPARRLKAEGKGSVEPARSASREPAEPAPSPPAAAPTKDAGSEAVLPELKVVSFDVREPTLGASVVGHVVVLAGSCYVWAATEGSVAQGSLAAAVGTRFDGGMPTATPLLAGEGAGEAGGGGVGVSMAQRLCKRTGRVVFVSCDLSEDSQILVAAVEAKVVALLKAE 357
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BLAST of mRNA_F-serratus_M_contig882.20194.1 vs. uniprot
Match: A0A485KKL7_9STRA (Aste57867_8572 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KKL7_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 1.240e-10
Identity = 45/100 (45.00%), Postives = 61/100 (61.00%), Query Frame = 2 
Query:  503 VTVLEGSCYVWASTEGSAAQ-GSFAAAVGTRFDGGMPTATPLLDGSGGAEAGGGGISVSMAQRLCKRTGRVVFVSCDLSEDSQILVAAVEAKIVKVLKEE 799
            + +L  +C+VW   +GS A+ GS + AV TR+D  +P A+ L+ GSG        +   MAQRL  RTG+ VFVSC+L ED   L A VE +IV  L+EE
Sbjct:   39 IWLLPNACFVWIGLDGSPARMGSMSTAVKTRYDP-LPLASSLIGGSGDE------VEQQMAQRLVLRTGKQVFVSCNLPEDDMELCAFVERQIVARLREE 131
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BLAST of mRNA_F-serratus_M_contig882.20194.1 vs. uniprot
Match: A0A6G0WHC5_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WHC5_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 1.230e-7
Identity = 39/100 (39.00%), Postives = 57/100 (57.00%), Query Frame = 2 
Query:  503 VTVLEGSCYVWASTEGSAAQ-GSFAAAVGTRFDGGMPTATPLLDGSGGAEAGGGGISVSMAQRLCKRTGRVVFVSCDLSEDSQILVAAVEAKIVKVLKEE 799
            + +L  +C+VW   + +A   GS + AV T++D  +P A+ L+        GG  +   MAQRL  RTGR VFVSC+L +D   L A +E  I+K L +E
Sbjct:   34 IWLLANACFVWIGLDSTAVSLGSMSTAVKTKYDP-LPLASSLI-------GGGNEMEQQMAQRLVLRTGRQVFVSCNLPDDDMELGAFIERAIIKRLNQE 125
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BLAST of mRNA_F-serratus_M_contig882.20194.1 vs. uniprot
Match: W4FSB2_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FSB2_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 6.090e-6
Identity = 46/121 (38.02%), Postives = 64/121 (52.89%), Query Frame = 2 
Query:  437 PEIKVIPFEVREPSLGASVVGHVTVLEGSCYVWAST-EGSAAQGSFAAAVGTRFDGGMPTATPLLDGSGGAEAGGGGISVSMAQRLCKRTGRVVFVSCDLSEDSQILVAAVEAKIVKVLKE 796
            P  ++I F+        SV   + +L  +C+VW    E     GS + AV TR+D  +P A+ LL   GGA+         MAQRL  RTG+ VFVSC+L ED   L A VE  I++ L++
Sbjct:   19 PSTQIIEFKGEFVDQHFSV--QIWLLAHACFVWVGLDETPVCMGSMSTAVKTRYDP-LPLASSLL--GGGADD----TEQQMAQRLVLRTGKQVFVSCNLPEDDMELGAYVERAILQRLRD 130
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig882.20194.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5K9L5_9PHAE1.160e-5745.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G2Q5_ECTSI3.780e-5643.34Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A485KKL7_9STRA1.240e-1045.00Aste57867_8572 protein n=1 Tax=Aphanomyces stellat... [more]
A0A6G0WHC5_9STRA1.230e-739.00Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
W4FSB2_9STRA6.090e-638.02Uncharacterized protein n=2 Tax=Aphanomyces astaci... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig882contigF-serratus_M_contig882:58637..61222 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size2134
Cds size747
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig882.20194.1prot_F-serratus_M_contig882.20194.1Fucus serratus malepolypeptideF-serratus_M_contig882 58695..59893 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932569.076146-UTR-F-serratus_M_contig882:58636..586941622932569.076146-UTR-F-serratus_M_contig882:58636..58694Fucus serratus maleUTRF-serratus_M_contig882 58637..58694 +
1690964370.1964643-UTR-F-serratus_M_contig882:58636..586941690964370.1964643-UTR-F-serratus_M_contig882:58636..58694Fucus serratus maleUTRF-serratus_M_contig882 58637..58694 +
1622932569.139315-UTR-F-serratus_M_contig882:59893..612221622932569.139315-UTR-F-serratus_M_contig882:59893..61222Fucus serratus maleUTRF-serratus_M_contig882 59894..61222 +
1690964370.234893-UTR-F-serratus_M_contig882:59893..612221690964370.234893-UTR-F-serratus_M_contig882:59893..61222Fucus serratus maleUTRF-serratus_M_contig882 59894..61222 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932569.0969276-CDS-F-serratus_M_contig882:58694..587191622932569.0969276-CDS-F-serratus_M_contig882:58694..58719Fucus serratus maleCDSF-serratus_M_contig882 58695..58719 +
1690964370.2069407-CDS-F-serratus_M_contig882:58694..587191690964370.2069407-CDS-F-serratus_M_contig882:58694..58719Fucus serratus maleCDSF-serratus_M_contig882 58695..58719 +
1622932569.1198528-CDS-F-serratus_M_contig882:59171..598931622932569.1198528-CDS-F-serratus_M_contig882:59171..59893Fucus serratus maleCDSF-serratus_M_contig882 59172..59893 +
1690964370.2173102-CDS-F-serratus_M_contig882:59171..598931690964370.2173102-CDS-F-serratus_M_contig882:59171..59893Fucus serratus maleCDSF-serratus_M_contig882 59172..59893 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig882.20194.1

>prot_F-serratus_M_contig882.20194.1 ID=prot_F-serratus_M_contig882.20194.1|Name=mRNA_F-serratus_M_contig882.20194.1|organism=Fucus serratus male|type=polypeptide|length=249bp
MEEAARAIGRHRMGFLTGNIESEPAPSGAGVMGRLSGIKSMFSFSRRQAT
PAPVHVSSAAGPPPVSAAKQRLQSSPDPWPTNVALKDDPTVAPRQSAGEE
RPVSKEEPAAARAAAGGPKASVQPVDPEIKVIPFEVREPSLGASVVGHVT
VLEGSCYVWASTEGSAAQGSFAAAVGTRFDGGMPTATPLLDGSGGAEAGG
GGISVSMAQRLCKRTGRVVFVSCDLSEDSQILVAAVEAKIVKVLKEEG*
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mRNA from alignment at F-serratus_M_contig882:58637..61222+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig882.20194.1 ID=mRNA_F-serratus_M_contig882.20194.1|Name=mRNA_F-serratus_M_contig882.20194.1|organism=Fucus serratus male|type=mRNA|length=2586bp|location=Sequence derived from alignment at F-serratus_M_contig882:58637..61222+ (Fucus serratus male)
CTTTGAAATATTTGATGAAGACACCACCCGGGAGATCAAGGAAGAACACA
CGAGGGATATGGAGGAAGCAGCCAGGGCCATAGGTGAGAGCGGATGCTTG
TGGGTACAACTCCGCCAATTGAAAGAAAAACGAGTCACGCTCTGAGTGAA
AGAACACACATGGTACAGATGTCCAGACAACGAAAGAGCAGATGTGGTAC
GGCAACAGCGAGGCGATCTGATAGAAAAACACGTGATGCATTCGTCGGCG
GGCAGGAGCAGTTCCTTCTCCCACCTAATCAAACTTTTTTATCCTATTGT
ACGGCCTGATCTCTCACGTCAAGCCTCCCGAGTCATAGTTCACTTTTTGA
GACATCGCTGATCATGACGATTTACTTTTTCGGTCCCTCCTTAAACCCAA
CCTCACCCCCACTCCCCTCTACATGTGTAAAAAGAAATGCTTGTCAAGTA
TGGATAGAGCTTGATGGTATTCTTGGGGCTTGCTGCCGTAGTCATTTTGC
GTCTCACTCTTTCAAACCGATCACATCATAACCAGGCCGTCACCGGATGG
GGTTCTTGACCGGGAACATTGAGAGCGAACCAGCGCCATCAGGGGCAGGC
GTAATGGGCAGACTATCAGGGATCAAGTCAATGTTTTCATTTTCTAGAAG
ACAAGCTACACCAGCACCTGTACATGTTTCGAGCGCAGCTGGTCCTCCTC
CAGTCTCTGCTGCAAAGCAACGTTTGCAAAGCTCCCCTGATCCATGGCCG
ACAAATGTAGCTTTAAAGGATGATCCAACCGTCGCGCCCCGTCAATCAGC
AGGGGAGGAACGACCAGTGTCAAAGGAAGAGCCGGCGGCGGCGAGAGCGG
CAGCGGGAGGACCCAAAGCTTCTGTTCAGCCAGTGGACCCCGAGATCAAG
GTGATACCGTTCGAGGTCCGGGAGCCATCCCTCGGCGCTTCGGTTGTGGG
CCATGTGACTGTCCTAGAAGGGTCCTGCTACGTCTGGGCGTCGACCGAGG
GATCGGCCGCCCAGGGATCGTTCGCCGCTGCGGTTGGCACGCGCTTCGAT
GGAGGCATGCCGACGGCAACGCCGCTGCTCGACGGTTCCGGCGGGGCCGA
GGCTGGGGGCGGGGGGATTAGCGTCAGCATGGCGCAGAGACTTTGCAAGC
GCACCGGCAGGGTAGTGTTCGTAAGCTGTGATCTCTCTGAGGATTCGCAG
ATTTTGGTTGCGGCCGTTGAAGCAAAGATAGTAAAGGTACTCAAAGAGGA
GGGTTGATCAGCGTGGCTGCACATATTTATGTTGTGAGAAACAAGAGGCT
CTCCACAAGCCCACGTAGGGAGAGCGTTCGGTATTTACTTCGCTCATTGT
GCCGGCGGAGAAGTGTCATCAACATCCACTGCCTTGTGATAGATGCAGTA
CTCTTCTTGAACTGGAAACCCTGATTTCCGGTAGAATAATTCCCGAGAAG
CTGCTCGGAATCGTTGCTGTCTCGACCTCTGGCAGGTTCGTATAGTCGGG
GGTGGGAACGCAATAAGGCACGAGACGTTCGACGATACATATTGTAGATA
TTTGTTGTTATTCAGATCAATATCAACACTTTGATTCGTGTACACGAGAG
AGCTCCAATCGCCGTCCTCGGACTCTTGGAAGCGCTTGAAATACCCCTAT
GTTGACCCCACTTTCAAGACAACTGTCAAGACCACGTGCATTGTAGCGTC
AAGTCGATCACACCGGCAAGAGGTTCCAGCAATTCTAACAAGCGTCGGAA
GAAGGTTGTGAAGGGGCGGGGCGTTGGCGAGAGCTTTCTGTGACCCAAGT
CATAGAAGTGCTGTCAAATGTGTAGTAGGAAGTAGAATGTACAACCTGAT
TCCCCTCGGCAATTTGTACCGCTTACTTCCTCGGGGGAGCCAAAGGTAGT
TTCGTACGGAGTATTGGATAGCTTGACTCAACCCTACGCTTGTGTGTACA
AAGTTGGGGAGGTTTACGGAGGCAGCGATTAGTTTTTGCGGTACTCCAGT
CACAGAGAGAAGAGTAAAGTTGTACGTAACAAGTATCGATTCGGCAAGAC
ACGCGTTCGGTTTCTCGCTGGCGAATAAAGAAGGCTCCCAAGTAAAATAC
CTGGTGTTTAATGTTTTAGGAATTTGAAAACGATCGGGGCATGTCGCTGA
ACACCATATCGAGACTGTTACTCGGTCTGACTGCTCGGGTCGTCGGAGAG
AGTCTCCTGAGATAACCAAGCCACAATCGTGGAGGTTACAAAAGTTGAAA
ATAGCTCTGTTGAGTCGTTCAACGATTGGGGGGTGCGGGGACGTAACAGA
TTTGTCCCCGGTTTGGGAAGAGACGGCACGAAAATAGGCCCTCCCGGGGA
TAAATTTGACCAACCCCCTGGCGAAATTAGTTGAACTCGGGGCAAGCTTC
CCGACCATGTAGGGGATCATGTATTCCGATCCCCGGAAAAGTTTTTTTTT
GGTGACCTCCCCGGGGACGAAGCCGTCGTATCCTCGCCCCCTCTAATCGT
TGAACGATTCTGTCGCTCGAACACCCGCGAAAAATGTCACCGACGTATTA
CAAGCAGTATAGACTCTATCCAGGACTATATATCTC
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Coding sequence (CDS) from alignment at F-serratus_M_contig882:58637..61222+

>mRNA_F-serratus_M_contig882.20194.1 ID=mRNA_F-serratus_M_contig882.20194.1|Name=mRNA_F-serratus_M_contig882.20194.1|organism=Fucus serratus male|type=CDS|length=1494bp|location=Sequence derived from alignment at F-serratus_M_contig882:58637..61222+ (Fucus serratus male)
ATGGAGGAAGCAGCCAGGGCCATAGATGGAGGAAGCAGCCAGGGCCATAG
GCCGTCACCGGATGGGGTTCTTGACCGGGAACATTGAGAGCGAACCAGCG
CCATCAGGGGCAGGCGTAATGGGCAGACTATCAGGGATCAAGTCAATGTT
TTCATTTTCTAGAAGACAAGCTACACCAGCACCTGTACATGTTTCGAGCG
CAGCTGGTCCTCCTCCAGTCTCTGCTGCAAAGCAACGTTTGCAAAGCTCC
CCTGATCCATGGCCGACAAATGTAGCTTTAAAGGATGATCCAACCGTCGC
GCCCCGTCAATCAGCAGGGGAGGAACGACCAGTGTCAAAGGAAGAGCCGG
CGGCGGCGAGAGCGGCAGCGGGAGGACCCAAAGCTTCTGTTCAGCCAGTG
GACCCCGAGATCAAGGTGATACCGTTCGAGGTCCGGGAGCCATCCCTCGG
CGCTTCGGTTGTGGGCCATGTGACTGTCCTAGAAGGGTCCTGCTACGTCT
GGGCGTCGACCGAGGGATCGGCCGCCCAGGGATCGTTCGCCGCTGCGGTT
GGCACGCGCTTCGATGGAGGCATGCCGACGGCAACGCCGCTGCTCGACGG
TTCCGGCGGGGCCGAGGCTGGGGGCGGGGGGATTAGCGTCAGCATGGCGC
AGAGACTTTGCAAGCGCACCGGCAGGGTAGTGTTCGTAAGCTGTGATCTC
TCTGAGGATTCGCAGATTTTGGTTGCGGCCGTTGAAGCAAAGATAGTAAA
GGTACTCAAAGAGGAGGGTTGAGCCGTCACCGGATGGGGTTCTTGACCGG
GAACATTGAGAGCGAACCAGCGCCATCAGGGGCAGGCGTAATGGGCAGAC
TATCAGGGATCAAGTCAATGTTTTCATTTTCTAGAAGACAAGCTACACCA
GCACCTGTACATGTTTCGAGCGCAGCTGGTCCTCCTCCAGTCTCTGCTGC
AAAGCAACGTTTGCAAAGCTCCCCTGATCCATGGCCGACAAATGTAGCTT
TAAAGGATGATCCAACCGTCGCGCCCCGTCAATCAGCAGGGGAGGAACGA
CCAGTGTCAAAGGAAGAGCCGGCGGCGGCGAGAGCGGCAGCGGGAGGACC
CAAAGCTTCTGTTCAGCCAGTGGACCCCGAGATCAAGGTGATACCGTTCG
AGGTCCGGGAGCCATCCCTCGGCGCTTCGGTTGTGGGCCATGTGACTGTC
CTAGAAGGGTCCTGCTACGTCTGGGCGTCGACCGAGGGATCGGCCGCCCA
GGGATCGTTCGCCGCTGCGGTTGGCACGCGCTTCGATGGAGGCATGCCGA
CGGCAACGCCGCTGCTCGACGGTTCCGGCGGGGCCGAGGCTGGGGGCGGG
GGGATTAGCGTCAGCATGGCGCAGAGACTTTGCAAGCGCACCGGCAGGGT
AGTGTTCGTAAGCTGTGATCTCTCTGAGGATTCGCAGATTTTGGTTGCGG
CCGTTGAAGCAAAGATAGTAAAGGTACTCAAAGAGGAGGGTTGA
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