mRNA_F-serratus_M_contig881.20191.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig881.20191.1
Unique NamemRNA_F-serratus_M_contig881.20191.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig881.20191.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig881contigF-serratus_M_contig881:345372..346230 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size803
Cds size801
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932568.0747776-CDS-F-serratus_M_contig881:345371..3458821622932568.0747776-CDS-F-serratus_M_contig881:345371..345882Fucus serratus maleCDSF-serratus_M_contig881 345372..345882 +
1690964369.7515693-CDS-F-serratus_M_contig881:345371..3458821690964369.7515693-CDS-F-serratus_M_contig881:345371..345882Fucus serratus maleCDSF-serratus_M_contig881 345372..345882 +
1622932568.0877333-CDS-F-serratus_M_contig881:345940..3462301622932568.0877333-CDS-F-serratus_M_contig881:345940..346230Fucus serratus maleCDSF-serratus_M_contig881 345941..346230 +
1690964369.7621613-CDS-F-serratus_M_contig881:345940..3462301690964369.7621613-CDS-F-serratus_M_contig881:345940..346230Fucus serratus maleCDSF-serratus_M_contig881 345941..346230 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig881.20191.1prot_F-serratus_M_contig881.20191.1Fucus serratus malepolypeptideF-serratus_M_contig881 345372..346230 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig881.20191.1

>prot_F-serratus_M_contig881.20191.1 ID=prot_F-serratus_M_contig881.20191.1|Name=mRNA_F-serratus_M_contig881.20191.1|organism=Fucus serratus male|type=polypeptide|length=267bp
GIIGSDGSGVVSRLDGIARGFAGIIGSDGSGVVSRLGGIARGFAGIIGSA
GSGIVSRLRRIRDGVSGIFRHARGGFGCLFAGFAGGVLGVLGGLCGGAFI
ITRDVVVGVRCGFADLLGDGLVFCGSVFGRLSSILGGFLYFLGGGLVFCG
RVFGGVGSLLGGFLHFLGGGPVVDFVVASLAASSASLAVSEALSAADSDV
FLVVSAAESAVSLADLEAVSLVSDAASLTASVALEAASEALSAVSLAALE
AVFFVSEAASVVTSAAS
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mRNA from alignment at F-serratus_M_contig881:345372..346230+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig881.20191.1 ID=mRNA_F-serratus_M_contig881.20191.1|Name=mRNA_F-serratus_M_contig881.20191.1|organism=Fucus serratus male|type=mRNA|length=859bp|location=Sequence derived from alignment at F-serratus_M_contig881:345372..346230+ (Fucus serratus male)
GGCATCATTGGCAGCGACGGTAGTGGCGTCGTAAGCCGACTTGACGGTAT
CGCTCGCGGCTTTGCCGGCATCATTGGCAGCGACGGTAGTGGCGTCGTAA
GCCGACTTGGCGGTATCGCTCGCGGCTTTGCCGGCATCATTGGCAGCGCC
GGTAGTGGCATCGTAAGCCGCCTTCGCAGAATCAGAGATGGTGTTTCCGG
CATCTTTCGCCATGCACGTGGCGGTTTTGGATGCCTCTTCGCCGGATTCG
CAGGCGGCGTTCTTGGTGTCCTTGGCGGTCTTTGTGGCGGTGCTTTCATC
ATTACCCGTGACGTAGTTGTAGGCGTCCGTTGCGGTTTCGCTGATCTTCT
CGGTGATGGACTTGTCTTCTGTGGTAGCGTCTTTGGCCGACTCAGTAGCA
TCCTTGGCGGATTCCTCTATTTTCTCGGTGGTGGACTTGTCTTTTGTGGT
CGCGTCTTTGGCGGCGTCGGCAGTCTCCTTGGCGGATTCCTCCATTTTCT
CGGTGGTGGACTTTGTGGTAGCGTCTTTGGCGGCGTCGGCAGTCTCCTTG
GCGGATTCCTCTATTTTCTCGGTGGTGGACTTTGTGGTCGCGTCTTTGGC
GGCGTCTTCAGCATCGTTGGCGGTGTCGGAAGCCTTATCGGCGGCCGATT
CGGACGTTTTCTTGGTGGTTTCGGCGGCGGAATCGGCGGTGTCTTTGGCG
GACTTAGAAGCGGTTTCCTTGGTGTCGGACGCAGCATCTTTGACGGCGTC
GGTCGCTTTGGAGGCGGCGTCGGAAGCGCTATCGGCGGTGTCGCTGGCGG
CGCTTGAAGCGGTTTTTTTCGTGTCGGAGGCAGCGTCGGTGGTTACGTCG
GCAGCGTCG
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Coding sequence (CDS) from alignment at F-serratus_M_contig881:345372..346230+

>mRNA_F-serratus_M_contig881.20191.1 ID=mRNA_F-serratus_M_contig881.20191.1|Name=mRNA_F-serratus_M_contig881.20191.1|organism=Fucus serratus male|type=CDS|length=1602bp|location=Sequence derived from alignment at F-serratus_M_contig881:345372..346230+ (Fucus serratus male)
GGCATCATTGGCAGCGACGGTAGTGGCGTCGTAAGCCGACTTGACGGTAT
CGCTCGCGGCTTTGCCGGCATCATTGGCAGCGACGGTAGTGGCGTCGTAA
GCCGACTTGGCGGTATCGCTCGCGGCTTTGCCGGCATCATTGGCAGCGCC
GGTAGTGGCATCGTAAGCCGCCTTCGCAGAATCAGAGATGGTGTTTCCGG
CATCTTTCGCCATGCACGTGGCGGTTTTGGATGCCTCTTCGCCGGATTCG
CAGGCGGCGTTCTTGGTGTCCTTGGCGGTCTTTGTGGCGGTGCTTTCATC
ATTACCCGTGACGTAGTTGTAGGCGTCCGTTGCGGTTTCGCTGATCTTCT
CGGTGATGGACTTGTCTTCTGTGGTAGCGTCTTTGGCCGACTCAGTAGCA
TCCTTGGCGGATTCCTCTATTTTCTCGGTGGTGGACTTGTCTTTTGTGGT
CGCGTCTTTGGCGGCGTCGGCAGTCTCCTTGGCGGATTCCTCCATTTTCT
CGGTGGTGGACGGCATCATTGGCAGCGACGGTAGTGGCGTCGTAAGCCGA
CTTGACGGTATCGCTCGCGGCTTTGCCGGCATCATTGGCAGCGACGGTAG
TGGCGTCGTAAGCCGACTTGGCGGTATCGCTCGCGGCTTTGCCGGCATCA
TTGGCAGCGCCGGTAGTGGCATCGTAAGCCGCCTTCGCAGAATCAGAGAT
GGTGTTTCCGGCATCTTTCGCCATGCACGTGGCGGTTTTGGATGCCTCTT
CGCCGGATTCGCAGGCGGCGTTCTTGGTGTCCTTGGCGGTCTTTGTGGCG
GTGCTTTCATCATTACCCGTGACGTAGTTGTAGGCGTCCGTTGCGGTTTC
GCTGATCTTCTCGGTGATGGACTTGTCTTCTGTGGTAGCGTCTTTGGCCG
ACTCAGTAGCATCCTTGGCGGATTCCTCTATTTTCTCGGTGGTGGACTTG
TCTTTTGTGGTCGCGTCTTTGGCGGCGTCGGCAGTCTCCTTGGCGGATTC
CTCCATTTTCTCGGTGGTGGACCGGTGGTGGACTTTGTGGTCGCGTCTTT
GGCGGCGTCTTCAGCATCGTTGGCGGTGTCGGAAGCCTTATCGGCGGCCG
ATTCGGACGTTTTCTTGGTGGTTTCGGCGGCGGAATCGGCGGTGTCTTTG
GCGGACTTAGAAGCGGTTTCCTTGGTGTCGGACGCAGCATCTTTGACGGC
GTCGGTCGCTTTGGAGGCGGCGTCGGAAGCGCTATCGGCGGTGTCGCTGG
CGGCGCTTGAAGCGGTTTTTTTCGTGTCGGAGGCAGCGTCGGTGGTTACG
TCGGCAGCGTCGCGGTGGTGGACTTTGTGGTCGCGTCTTTGGCGGCGTCT
TCAGCATCGTTGGCGGTGTCGGAAGCCTTATCGGCGGCCGATTCGGACGT
TTTCTTGGTGGTTTCGGCGGCGGAATCGGCGGTGTCTTTGGCGGACTTAG
AAGCGGTTTCCTTGGTGTCGGACGCAGCATCTTTGACGGCGTCGGTCGCT
TTGGAGGCGGCGTCGGAAGCGCTATCGGCGGTGTCGCTGGCGGCGCTTGA
AGCGGTTTTTTTCGTGTCGGAGGCAGCGTCGGTGGTTACGTCGGCAGCGT
CG
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