mRNA_F-serratus_M_contig880.20187.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig880.20187.1 vs. uniprot
Match: D7FH19_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH19_ECTSI) HSP 1 Score: 135 bits (341), Expect = 1.200e-34 Identity = 68/115 (59.13%), Postives = 85/115 (73.91%), Query Frame = 1
Query: 10 GQEGKASVALILEQLAREIAVAPTDTPHLCPNKFDSAEETLWHVSATIKSNNLRCLVVLDNVWDVEVVSAFANTGIHALVTTRERTVIPPMYRGVMVEVGDMEEMEGLELLRRTS 354
G+EGK VAL+LE LA E++ PTDTP CPN+F AEE L H+S+ + LRCLVVLDNVW+VEVV+AFA+TG H LVTTR+R VI ++ GV EVGDM E + LE+L + S
Sbjct: 308 GREGK-DVALLLEHLAVELSRVPTDTPRSCPNRFSGAEEALRHLSSVCAEDGLRCLVVLDNVWNVEVVNAFASTGFHVLVTTRQRAVISAVHAGVWTEVGDMSEEDALEVLSKAS 421
BLAST of mRNA_F-serratus_M_contig880.20187.1 vs. uniprot
Match: D8LL58_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL58_ECTSI) HSP 1 Score: 100 bits (248), Expect = 4.160e-22 Identity = 51/115 (44.35%), Postives = 69/115 (60.00%), Query Frame = 1
Query: 10 GQEGKASVALILEQLAREIAVAPTDTPHLCPNKFDSAEETLWHVSATIKSNNLRCLVVLDNVWDVEVVSAFANTGIHALVTTRERTVIPPMYRGVMVEVGDMEEMEGLELLRRTS 354
GQ G + +L+ LAR++A AP+ PH P++F E + H+ K NLRCLVVLD+VWD ++V F G H+LVTTR+ VIP +GV EV + E LELL+ S
Sbjct: 306 GQVGTGNPMALLQGLARDLAHAPSHQPHTVPHEFVDVEHAVSHLEGVRKERNLRCLVVLDDVWDAQIVPLFLCGGFHSLVTTRDLAVIPRDLQGVCTEVEMLTNAEALELLKNAS 420
BLAST of mRNA_F-serratus_M_contig880.20187.1 vs. uniprot
Match: D8LPV9_ECTSI (NB-ARC and TPR repeat-containig protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPV9_ECTSI) HSP 1 Score: 97.4 bits (241), Expect = 3.660e-21 Identity = 52/115 (45.22%), Postives = 75/115 (65.22%), Query Frame = 1
Query: 10 GQEGKASVALILEQLAREIAVAPTDTPHLCPNKFDSAEETLWHVSATIKSNNLRCLVVLDNVWDVEVVSAFANTGIHALVTTRERTVIPPMYRGVMVEVGDMEEMEGLELLRRTS 354
G+ S+ L+ LARE+ APTD PH P+ FDS E+ + H++A + + LVVLD+VW+ EVV+AF G+ LVTTR+R+++ G ++E+GDM E E LELL +TS
Sbjct: 311 GRGANKSLLHRLQGLAREMGAAPTDAPHGVPHVFDSLEQVMQHLAAVVSRGSSPRLVVLDDVWEREVVAAFLGVGLKVLVTTRDRSIVG--VPGGLLELGDMAEDEALELLWKTS 423
BLAST of mRNA_F-serratus_M_contig880.20187.1 vs. uniprot
Match: D7FUD7_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUD7_ECTSI) HSP 1 Score: 97.1 bits (240), Expect = 5.050e-21 Identity = 54/116 (46.55%), Postives = 74/116 (63.79%), Query Frame = 1
Query: 10 GQEGKASVALILEQLAREIAVAPTDTPHLCPNKFDSAEETLWHVSATIKSNNLRCLVVLDNVWDVEVVSAFANTGIHALVTTRERTVI-PPMYRGVMVEVGDMEEMEGLELLRRTS 354
G+ K S+ +L+ LARE+ APTD PH P+ DS E+ H++A + N LVVLD+VW+ EVV AF G L+TTR+R+++ P R +E+GDM E E LELLR+TS
Sbjct: 119 GRGAKNSLLPLLQGLAREVGAAPTDAPHGVPHALDSLEQVQQHLAAVASTRNSPRLVVLDDVWEREVVDAFVPLGFKLLLTTRDRSIVCDPAGR---LELGDMTEEEALELLRKTS 231
BLAST of mRNA_F-serratus_M_contig880.20187.1 vs. uniprot
Match: A0A6H5LJA6_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LJA6_9PHAE) HSP 1 Score: 95.1 bits (235), Expect = 2.120e-20 Identity = 51/115 (44.35%), Postives = 74/115 (64.35%), Query Frame = 1
Query: 10 GQEGKASVALILEQLAREIAVAPTDTPHLCPNKFDSAEETLWHVSATIKSNNLRCLVVLDNVWDVEVVSAFANTGIHALVTTRERTVIPPMYRGVMVEVGDMEEMEGLELLRRTS 354
G+ K S+ +L+ LARE++ APTDTPH P+ +S E+ H++ + LVVLD+VW+ EVV A + G+ LVTTR+R+V+ G ++E+GDM E E LELL +TS
Sbjct: 75 GRHAKNSLLSLLQGLAREMSAAPTDTPHGVPHVLESLEQVKQHLATVASAGTSPRLVVLDDVWEREVVDALLSLGLKVLVTTRDRSVVG--VSGGLLELGDMTEEEALELLLKTS 187
BLAST of mRNA_F-serratus_M_contig880.20187.1 vs. uniprot
Match: A0A6H5L982_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L982_9PHAE) HSP 1 Score: 93.6 bits (231), Expect = 6.890e-20 Identity = 47/115 (40.87%), Postives = 67/115 (58.26%), Query Frame = 1
Query: 10 GQEGKASVALILEQLAREIAVAPTDTPHLCPNKFDSAEETLWHVSATIKSNNLRCLVVLDNVWDVEVVSAFANTGIHALVTTRERTVIPPMYRGVMVEVGDMEEMEGLELLRRTS 354
GQ G + +L+ LA ++A AP++ P P++F E + H+ ++ NLRCLVVLDNVWD E+V F TG LVTTR+ ++P G V + E E LELL++ S
Sbjct: 265 GQVGTGNPTALLKGLAEDLAHAPSNRPRTVPHEFRDVEHVVSHLVGVLEQGNLRCLVVLDNVWDREMVPLFLRTGFRCLVTTRDVAMVPRHLWGTCTPVDMLTEAEALELLKKAS 379
BLAST of mRNA_F-serratus_M_contig880.20187.1 vs. uniprot
Match: A0A6H5KXS7_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXS7_9PHAE) HSP 1 Score: 92.8 bits (229), Expect = 1.470e-19 Identity = 50/115 (43.48%), Postives = 71/115 (61.74%), Query Frame = 1
Query: 10 GQEGKASVALILEQLAREIAVAPTDTPHLCPNKFDSAEETLWHVSATIKSNNLRCLVVLDNVWDVEVVSAFANTGIHALVTTRERTVIPPMYRGVMVEVGDMEEMEGLELLRRTS 354
G+ K+S+ +L+ LARE+ A TD PH P+ D E+ H++A + LVVLD+VW+ EVV AF G L+TTR+R+V+ + +EVGDM E E LELLR++S
Sbjct: 280 GRGAKSSLLALLQGLAREMGAARTDAPHTVPHVLDGLEQVKQHLAAVASTGTFPRLVVLDDVWEREVVDAFVPLGFKVLLTTRDRSVV--VVPAGRLEVGDMTEEEALELLRKSS 392
BLAST of mRNA_F-serratus_M_contig880.20187.1 vs. uniprot
Match: D7G722_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G722_ECTSI) HSP 1 Score: 90.5 bits (223), Expect = 9.880e-19 Identity = 51/116 (43.97%), Postives = 72/116 (62.07%), Query Frame = 1
Query: 10 GQEGKASVALILEQLAREIAVAPTDTPHLCPNKFDSAEETLWHVSATIKSNNLRCLVVLDNVWDVEVVSAFANTGIHALVTTRERTVIP-PMYRGVMVEVGDMEEMEGLELLRRTS 354
G+ K+S+ +L+ LA ++ APTD PH P+ D E+ H++A + LVVLD+VW+ EVV AF G L+TTR+R+V+ P R +E+GDM E E LELLR+TS
Sbjct: 334 GRGAKSSLLALLQGLAWDVGAAPTDAPHGVPHVLDRLEQVQQHLAAVASTGTSPRLVVLDDVWEREVVDAFVPLGFKVLLTTRDRSVVGLPAGR---LELGDMTEEEALELLRKTS 446
BLAST of mRNA_F-serratus_M_contig880.20187.1 vs. uniprot
Match: D7G720_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G720_ECTSI) HSP 1 Score: 90.5 bits (223), Expect = 9.960e-19 Identity = 51/116 (43.97%), Postives = 73/116 (62.93%), Query Frame = 1
Query: 10 GQEGKASVALILEQLAREIAVAPTDTPHLCPNKFDSAEETLWHVSATIKSNNLRCLVVLDNVWDVEVVSAFANTGIHALVTTRERTVIP-PMYRGVMVEVGDMEEMEGLELLRRTS 354
G+ K+S+ +L+ LAR++ APTD P P DS E+ H++A + + LVVLD+VW+ EVV AF G L+TTR+R+V+ P R +E+GD+ E E LELLR+TS
Sbjct: 317 GRGAKSSLLALLQGLARDVGAAPTDAPCGVPRVLDSLEQVRQHLAAVTSTGTSQRLVVLDDVWEREVVDAFVPLGFKVLLTTRDRSVVGVPAGR---LELGDVTEEEALELLRKTS 429
BLAST of mRNA_F-serratus_M_contig880.20187.1 vs. uniprot
Match: D8LGG5_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGG5_ECTSI) HSP 1 Score: 89.4 bits (220), Expect = 2.560e-18 Identity = 52/116 (44.83%), Postives = 71/116 (61.21%), Query Frame = 1
Query: 10 GQEGKASVALILEQLAREIAVAPTDTPHLCPNKFDSAEETLWHVSATIKSNNLRC-LVVLDNVWDVEVVSAFANTGIHALVTTRERTVIPPMYRGVMVEVGDMEEMEGLELLRRTS 354
G+ K S+ +L+ LARE+ VAPTD PH P DS E+ H++A + S LVVLD+VW+ EVV A G L+TTR+ +V+ R +++GDM E E LELLR+TS
Sbjct: 291 GRGAKNSLLPLLQGLAREMGVAPTDAPHAVPQVLDSLEQVQQHLAAVVASTGTSPRLVVLDDVWEREVVDALVPLGFKVLLTTRDWSVVVVPAR--RLDLGDMTEEEALELLRKTS 404 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig880.20187.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 20
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig880.20187.1 >prot_F-serratus_M_contig880.20187.1 ID=prot_F-serratus_M_contig880.20187.1|Name=mRNA_F-serratus_M_contig880.20187.1|organism=Fucus serratus male|type=polypeptide|length=119bp FHFGQEGKASVALILEQLAREIAVAPTDTPHLCPNKFDSAEETLWHVSATback to top mRNA from alignment at F-serratus_M_contig880:101001..101359+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig880.20187.1 ID=mRNA_F-serratus_M_contig880.20187.1|Name=mRNA_F-serratus_M_contig880.20187.1|organism=Fucus serratus male|type=mRNA|length=359bp|location=Sequence derived from alignment at F-serratus_M_contig880:101001..101359+ (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig880:101001..101359+ >mRNA_F-serratus_M_contig880.20187.1 ID=mRNA_F-serratus_M_contig880.20187.1|Name=mRNA_F-serratus_M_contig880.20187.1|organism=Fucus serratus male|type=CDS|length=714bp|location=Sequence derived from alignment at F-serratus_M_contig880:101001..101359+ (Fucus serratus male)back to top |