mRNA_F-serratus_M_contig88.20178.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig88.20178.1
Unique NamemRNA_F-serratus_M_contig88.20178.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig88.20178.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig88contigF-serratus_M_contig88:705271..707537 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size2267
Cds size360
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig88.20178.1prot_F-serratus_M_contig88.20178.1Fucus serratus malepolypeptideF-serratus_M_contig88 705331..705690 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932566.4386122-UTR-F-serratus_M_contig88:705270..7053301622932566.4386122-UTR-F-serratus_M_contig88:705270..705330Fucus serratus maleUTRF-serratus_M_contig88 705271..705330 +
1690964368.970157-UTR-F-serratus_M_contig88:705270..7053301690964368.970157-UTR-F-serratus_M_contig88:705270..705330Fucus serratus maleUTRF-serratus_M_contig88 705271..705330 +
1622932566.4750044-UTR-F-serratus_M_contig88:705690..7075371622932566.4750044-UTR-F-serratus_M_contig88:705690..707537Fucus serratus maleUTRF-serratus_M_contig88 705691..707537 +
1690964368.9918406-UTR-F-serratus_M_contig88:705690..7075371690964368.9918406-UTR-F-serratus_M_contig88:705690..707537Fucus serratus maleUTRF-serratus_M_contig88 705691..707537 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932566.459761-CDS-F-serratus_M_contig88:705330..7056901622932566.459761-CDS-F-serratus_M_contig88:705330..705690Fucus serratus maleCDSF-serratus_M_contig88 705331..705690 +
1690964368.980509-CDS-F-serratus_M_contig88:705330..7056901690964368.980509-CDS-F-serratus_M_contig88:705330..705690Fucus serratus maleCDSF-serratus_M_contig88 705331..705690 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig88.20178.1

>prot_F-serratus_M_contig88.20178.1 ID=prot_F-serratus_M_contig88.20178.1|Name=mRNA_F-serratus_M_contig88.20178.1|organism=Fucus serratus male|type=polypeptide|length=120bp
MSAASIADFDNPTTLKTVVAAFEVVAYADQNAKNNCTSRKTDDTGMDDVL
KTCTFGRHVDHTGSTDSTGDSTSLESLAASTAMAGACFSLETMDCCFVAM
ALDGSVLVLGWGGREGGLR*
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mRNA from alignment at F-serratus_M_contig88:705271..707537+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig88.20178.1 ID=mRNA_F-serratus_M_contig88.20178.1|Name=mRNA_F-serratus_M_contig88.20178.1|organism=Fucus serratus male|type=mRNA|length=2267bp|location=Sequence derived from alignment at F-serratus_M_contig88:705271..707537+ (Fucus serratus male)
GCTTGTTGCTACGATGATCACGATGGGCACCCTCGAGGGGTAAGCAGGGA
GTTCACCCACATGAGCGCAGCCTCTATAGCCGACTTTGACAACCCCACCA
CACTCAAAACAGTGGTTGCGGCGTTTGAGGTGGTAGCTTACGCCGATCAA
AACGCCAAGAACAACTGCACAAGCCGGAAAACTGACGACACGGGCATGGA
CGACGTTTTGAAAACGTGCACCTTCGGGAGGCACGTTGACCATACCGGCA
GCACCGATAGTACAGGAGACTCTACGTCCTTGGAGTCACTGGCAGCATCG
ACCGCGATGGCGGGTGCTTGCTTCAGCCTCGAAACGATGGACTGCTGCTT
CGTGGCTATGGCTCTCGATGGCAGTGTCCTAGTGCTTGGTTGGGGAGGCA
GAGAAGGCGGTCTTAGGTGACCACCGCTCCCGTCTAGGACAGAAGAACGA
CTGACAAGTAGCTCTATGGCCCAACTATAAGGGAGAAGACGACTTGTTCC
CGATTTAAAAGTAAAACCCTGGCGTAGCGTCTGGTCGAAGCTCATGCCTT
CAGTCAGCGGTCTCGTTGCGCGGGAACGAAGTAGCGACGCCTAGCATACG
TCGTATTACCCTGTCTACGACTAAGGACTCTCGTTGCCCGTCACGTGTTT
CGTCTTTTTTTCTGCTCCTTGGTGTAGACCGGATCGACCAACGCCTCCGC
TCCGATTGGAGTTGATGGGTAGCTGCCGCACCTCGTCCGGGGGGTGCGTG
ACAGCCCTCGGTACGTGTGGGACATTTATCGCCGTCGCAGAGTTCCTGCA
CTCGGTGTCAGTGTTCAGGCAAGACAGATGGGTGAAGAGACCTTGGACAC
TATATTTGGTCGAGGGCTGGCGAAAACTCTAACCCATTTGTGCCAACCTT
TCGACGACTTAGACCCAATCCCCGTTTTTCTGTGCCGAACGACAGTTTTG
ATCACGACTCAAGAACGCTGTCGCTGGTGGCTGCTCACTCTCGGAACGAC
CTTGTGGTAGCTGCTCTGGCCCTCTCCTTAAATCCCTGCGGGGGCACAGG
AAGATGCTCCGAAATACATAGAATTTTGACTATAGCGCTAGCCGATAGAA
CAACGGGAACGGTAGCTGTGCTTTCTTGCCCCGCGCTAAAACCCGTACGC
GAGGGTTCTGAAGGAGAAAAAAATCGAACGAAACGGTGCAGTGAAATTTG
TCATGACGGTTGCACCAACTGGGCGGCATGCAACAATGGTAGGCGGCTCG
GCAGCCGAAGCGCTGGTGTTAGCGGTTCTGCTCCTAAGTGGGGTCACATA
CTACCTTACACGGAGTCATTGCGCATGATCGCGGTGTGGCGGTGTCCTGA
AACGGTTACATGCCTTAAGTCATTGACACCCAATCCATTTCCTGGCTATT
GTTCGCAATTTGAGCAAGCCTCGATATGTGGGGAGGCTGATGATGGAGGC
TTATTCTTGTTGGGCACAGCCGCGGGGACGATCAAGACGGTTACAGTGGG
AACGCCCCGGTGCTGTTAAGGCAACATAAAATAACACAGTCTAGCAGCAC
GGGTATACGAGTATCCAGCATGTGTGATGATTGCAGTCGGTGGATGAGGG
CTAGGGACTAGTACGGTAGGGTAAACCGGCTTTTCAATTATTATGAGGAA
TGCTGTACCAAGATCTTAAGCGTTTTATTTGAAACTCCTTGAAGTATTTG
AACGTAGTGGCCCTCGAACATACACATATTATAATGCTAATGGAACGAAT
TGCCAATAACGGTGGAAACTCTGAAATATCTCCGGTGAAGTTCCGCTAGA
TTCTCCGATCAGTTTGCAATGGCGCAGCGAAGGCACGATGTGACGTCTGG
AACGAAATGTACGGTGGAAGTAGGTCAGTTTACTATTAATGAGTAAATGC
TTCCCTAATAAGTATATCGGTCACGCGAACTTAAGCGTCATCAGTGCTCA
TGTATGCATGTTCTCAGAGATGAAATCCAGAGCTAAGGGTCATAGAGTCA
AGCCGTAGCTGAATTCTAGGAATTGAGGGCTCTACGATTATCGTTCGAAT
TGTAGATAATCACAATTTTGTCAAGCGAAGTAAGCGCATGCTCTTGTTGC
ACTAAGAAAAAAACAGGGTTCCAGGCTCTGGGGCGTTAAACTTTATCTGC
CCCGATGACGTATGGCGGTGATAAATGAAAAAATGGACGCCGCCGCGGAA
CTCGGGAGGAATCCCGTAAGTAAGCACCAGATTCAGCCTGAGTATGGAGA
TGAGCAGGCTGACGCGG
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Coding sequence (CDS) from alignment at F-serratus_M_contig88:705271..707537+

>mRNA_F-serratus_M_contig88.20178.1 ID=mRNA_F-serratus_M_contig88.20178.1|Name=mRNA_F-serratus_M_contig88.20178.1|organism=Fucus serratus male|type=CDS|length=720bp|location=Sequence derived from alignment at F-serratus_M_contig88:705271..707537+ (Fucus serratus male)
ATGAGCGCAGCCTCTATAGCCGACTTTGACAACCCCACCACACTCAAAAC
AGTGGTTGCGGCGTTTGAGGTGGTAGCTTACGCCGATCAAAACGCCAAGA
ACAACTGCACAAGCCGGAAAACTGACGACACGGGCATGGACGACGTTTTG
AAAACGTGCACCTTCGGGAGGCACGTTGACCATACCGGCAGCACCGATAG
TACAGGAGACTCTACGTCCTTGGAGTCACTGGCAGCATCGACCGCGATGG
CGGGTGCTTGCTTCAGCCTCGAAACGATGGACTGCTGCTTCGTGGCTATG
GCTCTCGATGGCAGTGTCCTAGTGCTTGGTTGGGGAGGCAGAGAAGGCGG
TCTTAGGTGAATGAGCGCAGCCTCTATAGCCGACTTTGACAACCCCACCA
CACTCAAAACAGTGGTTGCGGCGTTTGAGGTGGTAGCTTACGCCGATCAA
AACGCCAAGAACAACTGCACAAGCCGGAAAACTGACGACACGGGCATGGA
CGACGTTTTGAAAACGTGCACCTTCGGGAGGCACGTTGACCATACCGGCA
GCACCGATAGTACAGGAGACTCTACGTCCTTGGAGTCACTGGCAGCATCG
ACCGCGATGGCGGGTGCTTGCTTCAGCCTCGAAACGATGGACTGCTGCTT
CGTGGCTATGGCTCTCGATGGCAGTGTCCTAGTGCTTGGTTGGGGAGGCA
GAGAAGGCGGTCTTAGGTGA
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