mRNA_F-serratus_M_contig88.20177.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig88.20177.1
Unique NamemRNA_F-serratus_M_contig88.20177.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig88.20177.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig88contigF-serratus_M_contig88:703140..705234 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size1512
Cds size1512
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig88.20177.1prot_F-serratus_M_contig88.20177.1Fucus serratus malepolypeptideF-serratus_M_contig88 703140..705234 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932566.3048866-CDS-F-serratus_M_contig88:703139..7034101622932566.3048866-CDS-F-serratus_M_contig88:703139..703410Fucus serratus maleCDSF-serratus_M_contig88 703140..703410 +
1690964368.9384758-CDS-F-serratus_M_contig88:703139..7034101690964368.9384758-CDS-F-serratus_M_contig88:703139..703410Fucus serratus maleCDSF-serratus_M_contig88 703140..703410 +
1622932566.349211-CDS-F-serratus_M_contig88:703804..7044211622932566.349211-CDS-F-serratus_M_contig88:703804..704421Fucus serratus maleCDSF-serratus_M_contig88 703805..704421 +
1690964368.9495382-CDS-F-serratus_M_contig88:703804..7044211690964368.9495382-CDS-F-serratus_M_contig88:703804..704421Fucus serratus maleCDSF-serratus_M_contig88 703805..704421 +
1622932566.3964422-CDS-F-serratus_M_contig88:704610..7052341622932566.3964422-CDS-F-serratus_M_contig88:704610..705234Fucus serratus maleCDSF-serratus_M_contig88 704611..705234 +
1690964368.9597542-CDS-F-serratus_M_contig88:704610..7052341690964368.9597542-CDS-F-serratus_M_contig88:704610..705234Fucus serratus maleCDSF-serratus_M_contig88 704611..705234 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig88.20177.1

>prot_F-serratus_M_contig88.20177.1 ID=prot_F-serratus_M_contig88.20177.1|Name=mRNA_F-serratus_M_contig88.20177.1|organism=Fucus serratus male|type=polypeptide|length=504bp
LEPKGLLRIGHWHPPPSLPRFKAQFGASTGSHVAIIWEGTMVILAMKATH
AAEATRRAEEMLVREVRRAEFGYPASAMAMRTVSCTCDNIVRGESVASTE
SALIAVSFWDRPSIAVLSWTPPLAKDALNSFTGVQGDGLLEEIAMWCPSY
ERMDSAAIDACEAPEIAAARVDVVRALTFMRSGKGSGRLQLVAGTADGVI
AIAGWQENSDDDESRNRLGMEWSGSAKLVTIATFQVGRGPVRLDVFERNP
INPFDDVGENEESVFVNSDDMDAVLRYCPDKGESSNNTRGAWRCTQVCKA
DFFPRQSVVSTSHSKLSMEDDTVGEYFAWLTTTKHLHQERFNVESSPGKS
RSAMGQDSDIDGNRRSNNEVAFGGLLLCLGKLDWESRGRFQKKSLLQTPT
HLLYVPVTRSIVVACLDHARRKAGSSFPDDDPGSSEPMQPTLPSLTSSLR
VFDADTLDERPGGPLHLHSGIRVTGLATLGLKEQWKVPVWTTTARNRGRE
DEHI
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mRNA from alignment at F-serratus_M_contig88:703140..705234+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig88.20177.1 ID=mRNA_F-serratus_M_contig88.20177.1|Name=mRNA_F-serratus_M_contig88.20177.1|organism=Fucus serratus male|type=mRNA|length=2095bp|location=Sequence derived from alignment at F-serratus_M_contig88:703140..705234+ (Fucus serratus male)
CTCGAACCGAAGGGGTTGCTTCGCATCGGTCACTGGCATCCACCACCCTC
TCTTCCTCGCTTCAAAGCGCAGTTCGGAGCGTCGACGGGTTCGCATGTTG
CTATCATCTGGGAGGGCACGATGGTGATCCTTGCAATGAAGGCAACACAC
GCTGCAGAAGCAACCCGACGAGCTGAAGAGATGTTGGTCAGGGAAGTGAG
GCGAGCAGAGTTTGGCTACCCCGCTAGTGCAATGGCGATGAGAACGGTCA
GCTGCACATGCGACAATATAGGTTCTGTATGCCAATATACCCCAGCCTGA
AGAAGTATGATTTAAAACTTTTGTGCTGTTTTTATCTATAGTAGTGATGG
CCCCGAACCAGTCGCGCTGCGCCAGGTAAGACTCAAACACCAACCTTGAC
TCCTATCGTCTTTCGGAACGTGAACCCGGCAGCTGACACGAGAGCCCACG
TCTTCGACGAATGTTGTCATCGGACGGACTCAGAACCATCAGACTCTACG
TATGAAATAGTAGACATGAGTGTTTACCATCAGCATTTACCTCTCGTGCC
CCCACCACAATTTCAGCACACCCCGTGAGCCACTTGTGTCTCATTTCTCT
TGCGCCCCTTTCTTCCCTCTTCGTGATGGTTTCATTGGCTCATTATTCCA
CGGGATACGCCAAAGTGCGCGGGGAGAGTGTAGCCTCAACCGAGTCAGCC
CTGATCGCGGTGTCATTTTGGGATCGTCCGTCCATAGCCGTCCTCTCGTG
GACCCCACCGCTGGCGAAGGATGCGTTGAACTCGTTTACGGGAGTTCAGG
GCGATGGGCTACTCGAAGAAATCGCGATGTGGTGTCCATCGTACGAGAGG
ATGGACTCGGCTGCCATCGATGCATGCGAAGCGCCAGAAATCGCAGCGGC
TAGGGTGGACGTTGTTCGCGCATTGACATTTATGCGATCTGGCAAGGGGA
GTGGGCGACTGCAGCTGGTAGCGGGAACGGCAGACGGGGTCATCGCCATT
GCAGGCTGGCAAGAAAATTCAGACGACGATGAGAGCCGAAATAGGCTAGG
GATGGAATGGAGTGGCTCTGCAAAACTCGTCACGATCGCCACATTCCAGG
TTGGTCGTGGGCCGGTGCGACTGGACGTCTTCGAGCGCAACCCAATCAAC
CCCTTCGACGACGTTGGAGAGAATGAGGAAAGTGTGTTCGTCAACAGCGA
TGATATGGACGCGGTGCTTCGGTATTGTCCGGATAAGGGGGAATCTAGCA
ACAACACGAGGGGAGCTTGGAGGTGTACACAGGTCCGTGGTTCCACATTT
TGTTTCTCAATATCCTTGATATATTTTTCATTTTCCAATACGACAATAGT
GCCGGCATCCGGTTACGCAACTCTCTAGATTCCGTTGAAAATACCCACTT
TCCTCTTGTTCTCCGCCCCCCCTCTTTTGTTCGTCTCCCCCTTATGCTTG
AATTGTCGAATTGGATAGCAGGTGTGCAAAGCTGATTTTTTCCCTCGACA
GAGCGTTGTCAGCACATCGCACTCTAAGCTTAGCATGGAGGACGATACGG
TGGGTGAATATTTTGCTTGGCTGACGACTACCAAGCATCTACATCAGGAA
CGTTTCAACGTGGAGTCAAGCCCCGGTAAGAGTAGGAGTGCCATGGGCCA
GGACAGCGATATCGACGGTAACAGACGTAGCAACAACGAGGTGGCATTCG
GAGGGCTACTTTTGTGTCTCGGTAAGCTCGACTGGGAGTCGCGTGGACGC
TTCCAGAAGAAGTCCCTCCTGCAGACGCCCACGCATCTTTTGTACGTTCC
CGTCACGCGGTCCATCGTTGTGGCGTGTCTCGATCACGCTCGTCGCAAGG
CCGGCAGTAGCTTTCCCGATGATGACCCAGGCAGCTCGGAGCCGATGCAG
CCTACTTTGCCAAGCCTGACGTCCAGCCTTCGCGTATTCGACGCCGACAC
GCTGGATGAAAGACCCGGTGGCCCCTTACATCTCCATTCGGGCATTAGGG
TGACTGGTTTGGCGACCCTAGGTCTCAAGGAACAATGGAAGGTGCCTGTG
TGGACGACGACCGCGCGCAACCGAGGTAGGGAAGATGAACATATA
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Coding sequence (CDS) from alignment at F-serratus_M_contig88:703140..705234+

>mRNA_F-serratus_M_contig88.20177.1 ID=mRNA_F-serratus_M_contig88.20177.1|Name=mRNA_F-serratus_M_contig88.20177.1|organism=Fucus serratus male|type=CDS|length=3024bp|location=Sequence derived from alignment at F-serratus_M_contig88:703140..705234+ (Fucus serratus male)
CTCGAACCGAAGGGGTTGCTTCGCATCGGTCACTGGCATCCACCACCCTC
TCTTCCTCGCTTCAAAGCGCAGTTCGGAGCGTCGACGGGTTCGCATGTTG
CTATCATCTGGGAGGGCACGATGGTGATCCTTGCAATGAAGGCAACACAC
GCTGCAGAAGCAACCCGACGAGCTGAAGAGATGTTGGTCAGGGAAGTGAG
GCGAGCAGAGTTTGGCTACCCCGCTAGTGCAATGGCGATGAGAACGGTCA
GCTGCACATGCGACAATATAGCTCGAACCGAAGGGGTTGCTTCGCATCGG
TCACTGGCATCCACCACCCTCTCTTCCTCGCTTCAAAGCGCAGTTCGGAG
CGTCGACGGGTTCGCATGTTGCTATCATCTGGGAGGGCACGATGGTGATC
CTTGCAATGAAGGCAACACACGCTGCAGAAGCAACCCGACGAGCTGAAGA
GATGTTGGTCAGGGAAGTGAGGCGAGCAGAGTTTGGCTACCCCGCTAGTG
CAATGGCGATGAGAACGGTCAGCTGCACATGCGACAATATAGTGCGCGGG
GAGAGTGTAGCCTCAACCGAGTCAGCCCTGATCGCGGTGTCATTTTGGGA
TCGTCCGTCCATAGCCGTCCTCTCGTGGACCCCACCGCTGGCGAAGGATG
CGTTGAACTCGTTTACGGGAGTTCAGGGCGATGGGCTACTCGAAGAAATC
GCGATGTGGTGTCCATCGTACGAGAGGATGGACTCGGCTGCCATCGATGC
ATGCGAAGCGCCAGAAATCGCAGCGGCTAGGGTGGACGTTGTTCGCGCAT
TGACATTTATGCGATCTGGCAAGGGGAGTGGGCGACTGCAGCTGGTAGCG
GGAACGGCAGACGGGGTCATCGCCATTGCAGGCTGGCAAGAAAATTCAGA
CGACGATGAGAGCCGAAATAGGCTAGGGATGGAATGGAGTGGCTCTGCAA
AACTCGTCACGATCGCCACATTCCAGGTTGGTCGTGGGCCGGTGCGACTG
GACGTCTTCGAGCGCAACCCAATCAACCCCTTCGACGACGTTGGAGAGAA
TGAGGAAAGTGTGTTCGTCAACAGCGATGATATGGACGCGGTGCTTCGGT
ATTGTCCGGATAAGGGGGAATCTAGCAACAACACGAGGGGAGCTTGGAGG
TGTACACAGTGCGCGGGGAGAGTGTAGCCTCAACCGAGTCAGCCCTGATC
GCGGTGTCATTTTGGGATCGTCCGTCCATAGCCGTCCTCTCGTGGACCCC
ACCGCTGGCGAAGGATGCGTTGAACTCGTTTACGGGAGTTCAGGGCGATG
GGCTACTCGAAGAAATCGCGATGTGGTGTCCATCGTACGAGAGGATGGAC
TCGGCTGCCATCGATGCATGCGAAGCGCCAGAAATCGCAGCGGCTAGGGT
GGACGTTGTTCGCGCATTGACATTTATGCGATCTGGCAAGGGGAGTGGGC
GACTGCAGCTGGTAGCGGGAACGGCAGACGGGGTCATCGCCATTGCAGGC
TGGCAAGAAAATTCAGACGACGATGAGAGCCGAAATAGGCTAGGGATGGA
ATGGAGTGGCTCTGCAAAACTCGTCACGATCGCCACATTCCAGGTTGGTC
GTGGGCCGGTGCGACTGGACGTCTTCGAGCGCAACCCAATCAACCCCTTC
GACGACGTTGGAGAGAATGAGGAAAGTGTGTTCGTCAACAGCGATGATAT
GGACGCGGTGCTTCGGTATTGTCCGGATAAGGGGGAATCTAGCAACAACA
CGAGGGGAGCTTGGAGGTGTACACAGGTGTGCAAAGCTGATTTTTTCCCT
CGACAGAGCGTTGTCAGCACATCGCACTCTAAGCTTAGCATGGAGGACGA
TACGGTGGGTGAATATTTTGCTTGGCTGACGACTACCAAGCATCTACATC
AGGAACGTTTCAACGTGGAGTCAAGCCCCGGTAAGAGTAGGAGTGCCATG
GGCCAGGACAGCGATATCGACGGTAACAGACGTAGCAACAACGAGGTGGC
ATTCGGAGGGCTACTTTTGTGTCTCGGTAAGCTCGACTGGGAGTCGCGTG
GACGCTTCCAGAAGAAGTCCCTCCTGCAGACGCCCACGCATCTTTTGTAC
GTTCCCGTCACGCGGTCCATCGTTGTGGCGTGTCTCGATCACGCTCGTCG
CAAGGCCGGCAGTAGCTTTCCCGATGATGACCCAGGCAGCTCGGAGCCGA
TGCAGCCTACTTTGCCAAGCCTGACGTCCAGCCTTCGCGTATTCGACGCC
GACACGCTGGATGAAAGACCCGGTGGCCCCTTACATCTCCATTCGGGCAT
TAGGGTGACTGGTTTGGCGACCCTAGGTCTCAAGGAACAATGGAAGGTGC
CTGTGTGGACGACGACCGCGCGCAACCGAGGTAGGGAAGATGAACATATA
GTGTGCAAAGCTGATTTTTTCCCTCGACAGAGCGTTGTCAGCACATCGCA
CTCTAAGCTTAGCATGGAGGACGATACGGTGGGTGAATATTTTGCTTGGC
TGACGACTACCAAGCATCTACATCAGGAACGTTTCAACGTGGAGTCAAGC
CCCGGTAAGAGTAGGAGTGCCATGGGCCAGGACAGCGATATCGACGGTAA
CAGACGTAGCAACAACGAGGTGGCATTCGGAGGGCTACTTTTGTGTCTCG
GTAAGCTCGACTGGGAGTCGCGTGGACGCTTCCAGAAGAAGTCCCTCCTG
CAGACGCCCACGCATCTTTTGTACGTTCCCGTCACGCGGTCCATCGTTGT
GGCGTGTCTCGATCACGCTCGTCGCAAGGCCGGCAGTAGCTTTCCCGATG
ATGACCCAGGCAGCTCGGAGCCGATGCAGCCTACTTTGCCAAGCCTGACG
TCCAGCCTTCGCGTATTCGACGCCGACACGCTGGATGAAAGACCCGGTGG
CCCCTTACATCTCCATTCGGGCATTAGGGTGACTGGTTTGGCGACCCTAG
GTCTCAAGGAACAATGGAAGGTGCCTGTGTGGACGACGACCGCGCGCAAC
CGAGGTAGGGAAGATGAACATATA
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