mRNA_F-serratus_M_contig88.20162.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig88.20162.1
Unique NamemRNA_F-serratus_M_contig88.20162.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig88.20162.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig88contigF-serratus_M_contig88:480122..481448 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionZinc finger, CCCH-type
Ec32 orthologEc-12_005080.1
Exons2
Model size893
Cds size453
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig88.20162.1prot_F-serratus_M_contig88.20162.1Fucus serratus malepolypeptideF-serratus_M_contig88 480122..481009 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932559.6394622-CDS-F-serratus_M_contig88:480121..4804251622932559.6394622-CDS-F-serratus_M_contig88:480121..480425Fucus serratus maleCDSF-serratus_M_contig88 480122..480425 +
1690964365.6087115-CDS-F-serratus_M_contig88:480121..4804251690964365.6087115-CDS-F-serratus_M_contig88:480121..480425Fucus serratus maleCDSF-serratus_M_contig88 480122..480425 +
1622932559.6552796-CDS-F-serratus_M_contig88:480860..4810091622932559.6552796-CDS-F-serratus_M_contig88:480860..481009Fucus serratus maleCDSF-serratus_M_contig88 480861..481009 +
1690964365.620459-CDS-F-serratus_M_contig88:480860..4810091690964365.620459-CDS-F-serratus_M_contig88:480860..481009Fucus serratus maleCDSF-serratus_M_contig88 480861..481009 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932559.7223835-UTR-F-serratus_M_contig88:481009..4814481622932559.7223835-UTR-F-serratus_M_contig88:481009..481448Fucus serratus maleUTRF-serratus_M_contig88 481010..481448 +
1690964365.63061-UTR-F-serratus_M_contig88:481009..4814481690964365.63061-UTR-F-serratus_M_contig88:481009..481448Fucus serratus maleUTRF-serratus_M_contig88 481010..481448 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig88.20162.1

>prot_F-serratus_M_contig88.20162.1 ID=prot_F-serratus_M_contig88.20162.1|Name=mRNA_F-serratus_M_contig88.20162.1|organism=Fucus serratus male|type=polypeptide|length=151bp
FGSGGGFGLDKSQTAPNIGGSGGGGGFGLGGGFVAGGGFGSNGGGFGSAG
GFGSTGGFSSVGGTSFGPNFSIDGDGGSATRHGGASDNPFGATPQSGFAS
TGRAVPREKVMATWYSDESAISAEDLKAHEEATYRIGSIPEDPPPRRFCV
*
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mRNA from alignment at F-serratus_M_contig88:480122..481448+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig88.20162.1 ID=mRNA_F-serratus_M_contig88.20162.1|Name=mRNA_F-serratus_M_contig88.20162.1|organism=Fucus serratus male|type=mRNA|length=1327bp|location=Sequence derived from alignment at F-serratus_M_contig88:480122..481448+ (Fucus serratus male)
TTCGGTTCGGGAGGCGGGTTCGGCTTGGACAAGAGTCAAACTGCGCCGAA
CATAGGTGGTAGTGGTGGGGGCGGCGGGTTCGGTTTGGGAGGCGGGTTTG
TTGCCGGCGGTGGATTCGGTTCGAACGGCGGCGGATTCGGCAGCGCAGGA
GGATTCGGTAGCACAGGGGGATTCAGTAGCGTCGGAGGCACATCATTTGG
TCCCAACTTCAGCATCGATGGAGACGGAGGCAGCGCGACAAGACACGGTG
GCGCATCTGATAACCCATTTGGCGCTACTCCTCAGAGTGGATTCGCGTCG
ACAGGTGCATGGAATTGGTGTGTTTTAATACAAAAAGCAAGTAGCTAGCT
GGTCGCAATACGGTGAAGCTATCGCGCCAGCGTCTTCTCGATGGCACGTC
GGGATTGGCGATATTGGATGTCGTATCGATGTTCTCTATGTCATGATTTT
TGTATAAACAGTATTGCAAGAGGGGTTTCATACAGTTCAGGCTCAGGCTC
ATGAGATTCAAGCCTCGGAAGTGTCACGACGAGGGGAATGATTCTGTGCG
CTGTACAACCAATATAGTCTAACCTCCTATATAGGTAAAAAAAATGTTCC
ATTTCGCGCTTGTATAAGTAAAACCTCGGTTTTGAGCTTCACCTTCACCT
GCTATCAATCCAGACATTAATACGTACCTGATAACTATTTTTTTCTCCTC
TTCGTACGCACTACTCTATACTCTGTATACTTTTAACAGGCCGCGCTGTA
CCGCGAGAAAAGGTCATGGCGACCTGGTATTCGGACGAAAGTGCCATCAG
TGCAGAAGACTTGAAGGCACACGAGGAAGCCACCTATCGCATCGGCAGCA
TTCCCGAAGATCCGCCGCCTCGAAGATTCTGCGTTTAGCTCTTTCGACCC
CCATCCCGTTGTTGGGTGGTTCCGACCAAATGTCAAGAAAGATCGAGCCG
TGCACAGTATCATCGCGGTCGTATCTTCTGTATACCTGGTATACGCGAAA
TGTTTTTGAGATCGCTGTACTTCTAAAAGTAGCAGCATTCGAAACACCCA
AGTTGTGCACGTATTTGTGTTAAGTATCGTTCGCCTCTTTTTTCAAATTC
CGTCGACATTCCGTCGACCGAACTCCGAAAAAAAACACCTTTCTTTTTGT
TGGGGTTTGTTTGTATCTCACTTACGACCGACGGGCGTCGGCGTCGTGCT
ACGGTTGCCAATCCCACTTATTGCAACGTTGACATCCTGGCTGTGATCAC
CAAGGAACTTCCCGTAACTATAAATGTCCATTTTCGTATCGGAAAGATAG
TAGGAAAGAAGCCCGTGAGTAAGCACC
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Coding sequence (CDS) from alignment at F-serratus_M_contig88:480122..481448+

>mRNA_F-serratus_M_contig88.20162.1 ID=mRNA_F-serratus_M_contig88.20162.1|Name=mRNA_F-serratus_M_contig88.20162.1|organism=Fucus serratus male|type=CDS|length=906bp|location=Sequence derived from alignment at F-serratus_M_contig88:480122..481448+ (Fucus serratus male)
TTCGGTTCGGGAGGCGGGTTCGGCTTGGACAAGAGTCAAACTGCGCCGAA
CATAGGTGGTAGTGGTGGGGGCGGCGGGTTCGGTTTGGGAGGCGGGTTTG
TTGCCGGCGGTGGATTCGGTTCGAACGGCGGCGGATTCGGCAGCGCAGGA
GGATTCGGTAGCACAGGGGGATTCAGTAGCGTCGGAGGCACATCATTTGG
TCCCAACTTCAGCATCGATGGAGACGGAGGCAGCGCGACAAGACACGGTG
GCGCATCTGATAACCCATTTGGCGCTACTCCTCAGAGTGGATTCGCGTCG
ACAGTTCGGTTCGGGAGGCGGGTTCGGCTTGGACAAGAGTCAAACTGCGC
CGAACATAGGTGGTAGTGGTGGGGGCGGCGGGTTCGGTTTGGGAGGCGGG
TTTGTTGCCGGCGGTGGATTCGGTTCGAACGGCGGCGGATTCGGCAGCGC
AGGAGGATTCGGTAGCACAGGGGGATTCAGTAGCGTCGGAGGCACATCAT
TTGGTCCCAACTTCAGCATCGATGGAGACGGAGGCAGCGCGACAAGACAC
GGTGGCGCATCTGATAACCCATTTGGCGCTACTCCTCAGAGTGGATTCGC
GTCGACAGGCCGCGCTGTACCGCGAGAAAAGGTCATGGCGACCTGGTATT
CGGACGAAAGTGCCATCAGTGCAGAAGACTTGAAGGCACACGAGGAAGCC
ACCTATCGCATCGGCAGCATTCCCGAAGATCCGCCGCCTCGAAGATTCTG
CGTTTAGGCCGCGCTGTACCGCGAGAAAAGGTCATGGCGACCTGGTATTC
GGACGAAAGTGCCATCAGTGCAGAAGACTTGAAGGCACACGAGGAAGCCA
CCTATCGCATCGGCAGCATTCCCGAAGATCCGCCGCCTCGAAGATTCTGC
GTTTAG
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