mRNA_F-serratus_M_contig88.20150.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig88.20150.1
Unique NamemRNA_F-serratus_M_contig88.20150.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig88.20150.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig88contigF-serratus_M_contig88:244853..247859 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-12_003320.1
Exons4
Model size743
Cds size540
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig88.20150.1prot_F-serratus_M_contig88.20150.1Fucus serratus malepolypeptideF-serratus_M_contig88 245005..247808 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932562.019188-UTR-F-serratus_M_contig88:244852..2450041622932562.019188-UTR-F-serratus_M_contig88:244852..245004Fucus serratus maleUTRF-serratus_M_contig88 244853..245004 +
1690964366.852227-UTR-F-serratus_M_contig88:244852..2450041690964366.852227-UTR-F-serratus_M_contig88:244852..245004Fucus serratus maleUTRF-serratus_M_contig88 244853..245004 +
1622932562.0958047-UTR-F-serratus_M_contig88:247808..2478591622932562.0958047-UTR-F-serratus_M_contig88:247808..247859Fucus serratus maleUTRF-serratus_M_contig88 247809..247859 +
1690964366.9279792-UTR-F-serratus_M_contig88:247808..2478591690964366.9279792-UTR-F-serratus_M_contig88:247808..247859Fucus serratus maleUTRF-serratus_M_contig88 247809..247859 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932562.0375414-CDS-F-serratus_M_contig88:245004..2451271622932562.0375414-CDS-F-serratus_M_contig88:245004..245127Fucus serratus maleCDSF-serratus_M_contig88 245005..245127 +
1690964366.8662202-CDS-F-serratus_M_contig88:245004..2451271690964366.8662202-CDS-F-serratus_M_contig88:245004..245127Fucus serratus maleCDSF-serratus_M_contig88 245005..245127 +
1622932562.0528054-CDS-F-serratus_M_contig88:246388..2464771622932562.0528054-CDS-F-serratus_M_contig88:246388..246477Fucus serratus maleCDSF-serratus_M_contig88 246389..246477 +
1690964366.880023-CDS-F-serratus_M_contig88:246388..2464771690964366.880023-CDS-F-serratus_M_contig88:246388..246477Fucus serratus maleCDSF-serratus_M_contig88 246389..246477 +
1622932562.0682232-CDS-F-serratus_M_contig88:247168..2473191622932562.0682232-CDS-F-serratus_M_contig88:247168..247319Fucus serratus maleCDSF-serratus_M_contig88 247169..247319 +
1690964366.8965087-CDS-F-serratus_M_contig88:247168..2473191690964366.8965087-CDS-F-serratus_M_contig88:247168..247319Fucus serratus maleCDSF-serratus_M_contig88 247169..247319 +
1622932562.0832748-CDS-F-serratus_M_contig88:247631..2478081622932562.0832748-CDS-F-serratus_M_contig88:247631..247808Fucus serratus maleCDSF-serratus_M_contig88 247632..247808 +
1690964366.9077487-CDS-F-serratus_M_contig88:247631..2478081690964366.9077487-CDS-F-serratus_M_contig88:247631..247808Fucus serratus maleCDSF-serratus_M_contig88 247632..247808 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig88.20150.1

>prot_F-serratus_M_contig88.20150.1 ID=prot_F-serratus_M_contig88.20150.1|Name=mRNA_F-serratus_M_contig88.20150.1|organism=Fucus serratus male|type=polypeptide|length=180bp
MADKARDCVVSEFGSPIESFAVQKWMRDRKLVAASRPAAAAANVAHPGDL
RLIFNHLDPRRTGKMYMRTLRNALAAMGDLSEDRARHKTLLKNIVGCFRM
SSRFKHTGVDFNQFATIMLSQGKTSRKFLTLQEERKSGDLANALSLFVSR
FRRDIFIRELLDEDRADTLAWATFKVTHV*
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mRNA from alignment at F-serratus_M_contig88:244853..247859+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig88.20150.1 ID=mRNA_F-serratus_M_contig88.20150.1|Name=mRNA_F-serratus_M_contig88.20150.1|organism=Fucus serratus male|type=mRNA|length=3007bp|location=Sequence derived from alignment at F-serratus_M_contig88:244853..247859+ (Fucus serratus male)
CAGGTCGTCTGCGCAAATCCGCCGTGGCTATTGATCGTCGTTTAGGAAGA
CCCCTAGGGAGCTCGACGGTTTCTTGTCGCAGACCATTATATCGGGACAG
ATGGATCGCTGGGAAACATGGGGATAGAGCAGCTTGGCTTATTTAGAAGG
TGATGGCAGACAAGGCCAGAGACTGCGTTGTTTCTGAATTCGGCTCGCCT
ATCGAGAGCTTTGCAGTTCAGAAATGGATGAGAGACAGGAAGCTTGTCGC
TGCATCGCGACCCGCTGCCGCAGCGGTGAGCGACACCATAGTAGAAATGG
CATGCCATATATATATATATATATTAGATAGTTATAGCATTAGGTTTAGA
TGCGTTCAATTTTTCTCTAAAATCCACCCTATTTTCGTCGGACTAGAGAG
TATCATCATACTGTATACTGTATGTACATTGTAGCCGAAGTTAACCTTAT
GCTAGAGAGTATCATACTAATAGAGAATATCATACTGCTGTGTCTACATT
GTAGACGAAGTTAACCTTATGCTTGTATAAAGAAAATCTGAACGCAACTA
AACCTTCTGATCAGTCAAAAGGTTTAGGTGGGAACATTATTGGCAGTCTC
GGCCTAATGGGTAAAACATTATGGCTACTACAAAAGTTAGTACCTATAGT
CGTCGTGGGTCCGAATCTCAGGCTGAGACTGAGACGGAGAAGTTTTCCTC
GTTGCACTGTATTCATATTATTTTAAGTATTATCTTATTATTGCATTATT
ATATGATTTACAGTACGGTTAACGGATTAACTTTGGAGATCCTTGGCGCT
TTGGTTGTTTGTTTGAGCGGGGGTGACGAGTTGTGATGAGAGAAAATGCA
CATATTATGAGAGATTAATACTATAATACTACCAGTCTTCTCATGGCAGA
GAGACAGGGACGCGCTGTCAAGGGTTCGGTTCCTTCGGACTCCACGTCTA
GCTTCACTCATTTTTAATGTTGCAGAAACTAATCCCTTGGGACTAACAAC
GTAGTGGGCGGCGCTGGCTGTCTTAGCCTAACTAACGGGCTAATTGCCGG
CTACTATACTACTAATAAGTACTATATTGTAATACCCCACGACGTCGTGT
GTGCATTTTTTAGTATGGAAGACGAAAATTAACAAATAACCCTCATACTA
CTATTGATATTGATAAGCGCTGATTACTGCGGTCTAATGAGTGGATTTTG
ACTATGCATAATATTAGTAATAGGATACTTTATTGATTTTAGTTACACTA
CACATCAAACGACCAGGCTGACTACTTTAAAGTCTTATCATTACCAGGTA
TGGGTTAATTTTGACTATGATGAATAATGGTGTAGGCTTTTATTTTTTTA
GTTACACTACCCTACACTACACTACACTAGACGTAACAAGCACCAGCAGG
AGTACCGTACTTGTACAGCGGGTGCACTCCATTGCTCGTTTTGTTTGAGT
AGCAGCGCTTCTCTCGCCGATCGATACGGTTTACCCACTCTGCCCGGTTA
TAAATACTCGTGAATGTTTACTACCATACTTTATAGGCGAACGTGGCCCA
TCCAGGCGATCTTCGGCTCATATTCAATCATCTCGATCCTCGACGAACGG
GTAAAATGTATATGCGCACGCTAAGGTATGGTCTATATGTATATACTCTT
ATGTAAGAGAGAGATCGCGTGATTCGAAGGGTAGGTACGGCGGTCGGTTG
TTCGACACGTGACCCTGCATGATGTACTATTAATAGTCGAGGATAATGTA
GAAGAAAACGACCCCGCAAGGACTCAGATGCCCCTCTCGCTGCCCCTCTC
GCTGATTGGTCGGTAGGGGTATCAGTTATGTAAGGCTGAGTGGCAAATGA
CACGACAAATAATGCTATTTTGTGTAGGTTGCAAGGCTAAAACCGATGCT
GATCTATACCTCATTTAGCGTCCTCGTATTTTTTCTTTTCTTTTTTATCT
CACTCATTAGTAATAGTATACTCGATGGACCTTATCATTACCATCCTGCC
TGTGTCACAGTCACCAAGGATCTTCTCATCTCTCCCCGGTTCACGCCTTA
CCATATTTTATCGCGATGCAAGTTCAGCAATCTTACAACTCGTCAACCAA
TGCTTGACGCTTTCCGTTACGGAAGAAAGAACACAAATGCTACTTTGGTT
AGAATCGAACTCACGACTTCCGCACTATGATAGCAGGTGTGCAGGTTTAC
CTACTATTAATAGACCACTCGGGCAACGCATTACAGAAATCAATCGATGC
TCGCACACTCAGGGACCAAAACCGCTGAGCATTGCTTACACGATACTCTT
GCCTCGCAATTTCAAGGAACGCCCTAGCTGCGATGGGAGACCTCAGCGAA
GATCGAGCCCGACACAAAACACTCTTGAAAAACATCGTCGGCTGCTTCCG
TATGTCCAGTCGCTTCAAGCATACGGGGGTGGATTTCAACCAGTTTGCGA
CCATCATGTTGAGCCAGGTGAACTCTGGGTGTTCGGGAGGGACATCACAC
GCCGGAGTCACCCCCCCGGAGATCTTTTTGGCCCCGAACAGGTCCTTGTG
CTAGGCTTGCAGATTATGTTAAGAAGTGTGTGCAGCACGGCGTCGTATAC
CCCGAGCCGTACGCATTGGAAAGAGCTACAAACTTGATGCGCCTGTTCCC
CGAACTCACGTTGTGTGACACATCACGCACACGAGGAGCAAAAAATAGTT
GATTTACTTCCAAGGTTAAAAAAAGAAGGCGGTGCCGTGCGCCTGACACG
GCGTCTCGCGCCGCGCTCCATCTTAAAAGGGAAAAACAAGCCGTAAGTTT
CTGACGCTTCAAGAGGAGCGCAAGAGCGGCGATCTGGCCAACGCATTGAG
CCTCTTCGTAAGTCGCTTCCGAAGAGACATCTTCATAAGGGAGCTGCTCG
ATGAGGACCGCGCGGACACGCTCGCGTGGGCAACGTTCAAGGTGACACAT
GTGTGAGGTGCGGCGACCCGTTAAGCGTATAACATCCCGCACAACTATAC
GCACGCG
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Coding sequence (CDS) from alignment at F-serratus_M_contig88:244853..247859+

>mRNA_F-serratus_M_contig88.20150.1 ID=mRNA_F-serratus_M_contig88.20150.1|Name=mRNA_F-serratus_M_contig88.20150.1|organism=Fucus serratus male|type=CDS|length=1080bp|location=Sequence derived from alignment at F-serratus_M_contig88:244853..247859+ (Fucus serratus male)
ATGGCAGACAAGGCCAGAGACTGCGTTGTTTCTGAATTCGGCTCGCCTAT
CGAGAGCTTTGCAGTTCAGAAATGGATGAGAGACAGGAAGCTTGTCGCTG
CATCGCGACCCGCTGCCGCAGCGATGGCAGACAAGGCCAGAGACTGCGTT
GTTTCTGAATTCGGCTCGCCTATCGAGAGCTTTGCAGTTCAGAAATGGAT
GAGAGACAGGAAGCTTGTCGCTGCATCGCGACCCGCTGCCGCAGCGGCGA
ACGTGGCCCATCCAGGCGATCTTCGGCTCATATTCAATCATCTCGATCCT
CGACGAACGGGTAAAATGTATATGCGCACGCTAAGGCGAACGTGGCCCAT
CCAGGCGATCTTCGGCTCATATTCAATCATCTCGATCCTCGACGAACGGG
TAAAATGTATATGCGCACGCTAAGGAACGCCCTAGCTGCGATGGGAGACC
TCAGCGAAGATCGAGCCCGACACAAAACACTCTTGAAAAACATCGTCGGC
TGCTTCCGTATGTCCAGTCGCTTCAAGCATACGGGGGTGGATTTCAACCA
GTTTGCGACCATCATGTTGAGCCAGGAACGCCCTAGCTGCGATGGGAGAC
CTCAGCGAAGATCGAGCCCGACACAAAACACTCTTGAAAAACATCGTCGG
CTGCTTCCGTATGTCCAGTCGCTTCAAGCATACGGGGGTGGATTTCAACC
AGTTTGCGACCATCATGTTGAGCCAGGGAAAAACAAGCCGTAAGTTTCTG
ACGCTTCAAGAGGAGCGCAAGAGCGGCGATCTGGCCAACGCATTGAGCCT
CTTCGTAAGTCGCTTCCGAAGAGACATCTTCATAAGGGAGCTGCTCGATG
AGGACCGCGCGGACACGCTCGCGTGGGCAACGTTCAAGGTGACACATGTG
TGAGGAAAAACAAGCCGTAAGTTTCTGACGCTTCAAGAGGAGCGCAAGAG
CGGCGATCTGGCCAACGCATTGAGCCTCTTCGTAAGTCGCTTCCGAAGAG
ACATCTTCATAAGGGAGCTGCTCGATGAGGACCGCGCGGACACGCTCGCG
TGGGCAACGTTCAAGGTGACACATGTGTGA
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