mRNA_F-serratus_M_contig878.20131.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig878.20131.1
Unique NamemRNA_F-serratus_M_contig878.20131.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig878.20131.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig878contigF-serratus_M_contig878:259766..261213 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons3
Model size581
Cds size312
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig878.20131.1prot_F-serratus_M_contig878.20131.1Fucus serratus malepolypeptideF-serratus_M_contig878 260447..261046 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932557.4441595-UTR-F-serratus_M_contig878:259765..2598231622932557.4441595-UTR-F-serratus_M_contig878:259765..259823Fucus serratus maleUTRF-serratus_M_contig878 259766..259823 +
1690964364.5487852-UTR-F-serratus_M_contig878:259765..2598231690964364.5487852-UTR-F-serratus_M_contig878:259765..259823Fucus serratus maleUTRF-serratus_M_contig878 259766..259823 +
1622932557.4632368-UTR-F-serratus_M_contig878:260402..2604461622932557.4632368-UTR-F-serratus_M_contig878:260402..260446Fucus serratus maleUTRF-serratus_M_contig878 260403..260446 +
1690964364.5588725-UTR-F-serratus_M_contig878:260402..2604461690964364.5588725-UTR-F-serratus_M_contig878:260402..260446Fucus serratus maleUTRF-serratus_M_contig878 260403..260446 +
1622932557.515234-UTR-F-serratus_M_contig878:261046..2612131622932557.515234-UTR-F-serratus_M_contig878:261046..261213Fucus serratus maleUTRF-serratus_M_contig878 261047..261213 +
1690964364.595144-UTR-F-serratus_M_contig878:261046..2612131690964364.595144-UTR-F-serratus_M_contig878:261046..261213Fucus serratus maleUTRF-serratus_M_contig878 261047..261213 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932557.476072-CDS-F-serratus_M_contig878:260446..2606381622932557.476072-CDS-F-serratus_M_contig878:260446..260638Fucus serratus maleCDSF-serratus_M_contig878 260447..260638 +
1690964364.5696123-CDS-F-serratus_M_contig878:260446..2606381690964364.5696123-CDS-F-serratus_M_contig878:260446..260638Fucus serratus maleCDSF-serratus_M_contig878 260447..260638 +
1622932557.4937642-CDS-F-serratus_M_contig878:260926..2610461622932557.4937642-CDS-F-serratus_M_contig878:260926..261046Fucus serratus maleCDSF-serratus_M_contig878 260927..261046 +
1690964364.5811162-CDS-F-serratus_M_contig878:260926..2610461690964364.5811162-CDS-F-serratus_M_contig878:260926..261046Fucus serratus maleCDSF-serratus_M_contig878 260927..261046 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig878.20131.1

>prot_F-serratus_M_contig878.20131.1 ID=prot_F-serratus_M_contig878.20131.1|Name=mRNA_F-serratus_M_contig878.20131.1|organism=Fucus serratus male|type=polypeptide|length=104bp
MAGLWAVCGRNTLAAKLFLWSWLAGIAFSIAVSLTRTLAKSRHGTPVVPL
SIAVHYFFLIYFTKVAWSYYAVLKERDINASSGNDDGVELRGIMDDQRSG
AIA*
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mRNA from alignment at F-serratus_M_contig878:259766..261213+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig878.20131.1 ID=mRNA_F-serratus_M_contig878.20131.1|Name=mRNA_F-serratus_M_contig878.20131.1|organism=Fucus serratus male|type=mRNA|length=1448bp|location=Sequence derived from alignment at F-serratus_M_contig878:259766..261213+ (Fucus serratus male)
CTCCAGGACACACTGAGCTCGGAGGAAGACACACCAGCAGTCGTCAAATA
CGTGTACGGTAAATGAAGAAAGAGACGGACTAGAAGTAGGTCGTCCTCCG
ACCAGCCAACGAAACTGGAAGAAGCATGGATATGATACTCGGATAGAGTT
GTATTCACCACGGGTGGCAGACGAGTGCGAGTTTCGTGGCCCAATGCGGG
TCTTGTGGAACATATTTCGACTCAACATATTTGCTGCGTAGTTTCGTGTA
TAACACGCATGTGGTAGTCTAGATTCCCACCTCTCGTGAAAACTCACACC
CTACTCCTCCTGAGCTGTAAGCTCGTATCCTGTTTAGAACGGACGTTGTT
TGACGTTTTATATAAGCGTCCAGAAGTGTCTTTTCGCAGATCAAAGCAAA
TGAGCTGCTCGTCTCCCAGTGCTACGTAAGCATTCGACAGATTCACGCGA
GAACAGGAAGTGGTCATGACGATGGCCGAAATCTCAGCCTTATTCTTGTA
AAGACTTACTGTGCGCCATTCTCTCCCTCCAATCGAGCTCAATATGATGG
TCACCGCACTCTCGTTGCACCATCACACGAACACGTGCTATTTCACTTCC
CGCTCTTTTGCTGCTGCCGGTCGTTACTCTTCCGCAGAATACCTCCTGTA
TATTAGCTTTCTTGTGGGCCTGGCTGGTGGTATGGCCGGCCTGTGGGCTG
TTTGCGGCCGCAACACTTTGGCGGCAAAGCTCTTTCTGTGGTCGTGGCTG
GCAGGCATCGCGTTCAGCATAGCCGTGTCGCTCACAAGAACACTGGCCAA
GAGCCGCCATGGCACACCGGTCGTACCTTTGTCCATTGCGGTACATTATT
TCTTTCTCATTTACTTCACAAAGGTATTCGACTTGTACGAGTATGGCAGT
GGGTATTAGGCGTCGTCGGTGGACGTTCGGAATCAAACATCGAGTATGTA
TAACAGAGCGAACGTAACACGTTTCAGGTGGTTGGCGTATTAGGTGATTG
GTTTATAGTAACACTCTTAGGACAATCGAGTATGACGTATCTACCGTGTC
GAAGGAAATGCCTTATTACACCGTTCGCCGATCCAGTGGGATGTCGGCTT
CAGGTTTCCCAACTGTAAGGTATCTCGTCACCTCGACTGTCGTTTTACCA
TATGTTGTCAGGTGGCTTGGTCCTACTACGCGGTGCTGAAAGAACGCGAC
ATCAACGCCTCGTCTGGCAATGATGATGGAGTTGAGCTCCGTGGTATCAT
GGACGATCAGAGAAGTGGCGCGATTGCTTGAGACGCTGCGCGTCCTGCTT
TATGCGCGGAGGAGCAGGAGACTTTGAAAAGGAGTACAAAACCGTACATT
TTCGACGTGTTATACTAGTATACGATATGGAAGGTGTCCAGTGAAATTAG
TTTTGCGCGTCAGACGCTTCATGTAAAACGCATTTTCTAAGAGACTGC
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Coding sequence (CDS) from alignment at F-serratus_M_contig878:259766..261213+

>mRNA_F-serratus_M_contig878.20131.1 ID=mRNA_F-serratus_M_contig878.20131.1|Name=mRNA_F-serratus_M_contig878.20131.1|organism=Fucus serratus male|type=CDS|length=624bp|location=Sequence derived from alignment at F-serratus_M_contig878:259766..261213+ (Fucus serratus male)
ATGGCCGGCCTGTGGGCTGTTTGCGGCCGCAACACTTTGGCGGCAAAGCT
CTTTCTGTGGTCGTGGCTGGCAGGCATCGCGTTCAGCATAGCCGTGTCGC
TCACAAGAACACTGGCCAAGAGCCGCCATGGCACACCGGTCGTACCTTTG
TCCATTGCGGTACATTATTTCTTTCTCATTTACTTCACAAAGATGGCCGG
CCTGTGGGCTGTTTGCGGCCGCAACACTTTGGCGGCAAAGCTCTTTCTGT
GGTCGTGGCTGGCAGGCATCGCGTTCAGCATAGCCGTGTCGCTCACAAGA
ACACTGGCCAAGAGCCGCCATGGCACACCGGTCGTACCTTTGTCCATTGC
GGTACATTATTTCTTTCTCATTTACTTCACAAAGGTGGCTTGGTCCTACT
ACGCGGTGCTGAAAGAACGCGACATCAACGCCTCGTCTGGCAATGATGAT
GGAGTTGAGCTCCGTGGTATCATGGACGATCAGAGAAGTGGCGCGATTGC
TTGAGTGGCTTGGTCCTACTACGCGGTGCTGAAAGAACGCGACATCAACG
CCTCGTCTGGCAATGATGATGGAGTTGAGCTCCGTGGTATCATGGACGAT
CAGAGAAGTGGCGCGATTGCTTGA
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