mRNA_F-serratus_M_contig876.20125.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig876.20125.1
Unique NamemRNA_F-serratus_M_contig876.20125.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig876.20125.1 vs. uniprot
Match: A0A329S4C9_9STRA (CCHC-type domain-containing protein n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329S4C9_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 3.420e-8
Identity = 42/160 (26.25%), Postives = 76/160 (47.50%), Query Frame = 1 
Query:    4 AWRNLEHHYRAKGTREILRLSHEINGKTMEPGSDPFKFMMEVDKLAGDLHRLGDKSVTELRRCVIIVSGLSADYEMECRMLENNPDGLNRGEIERVVGNQYNRLLRQQQDSKALSASRGTITANRENGKNRRPSNKFEGKCFNCGKRGHRAVECKGTKKK 483
            AW  LE  +  +     + L+ ++N  T+  G + +  +    +L+  L   G+  + E R+ VI++  L  +Y +  +++E+         I  V   Q   +L+++        +     + R+  KN +P +K  GKCFNCGK GH+  EC+  KKK
Sbjct:   66 AWEVLEGFFNRQTMHNRVALNQKMNEFTLASGGNLYDHLTRFKELSTALAAAGEP-LDEQRQLVILLGNLPREYHVTVKIIES---------IAGVTMLQAAEMLKREYAESRHEDTEVAFHSARQRNKNTKPQSKCRGKCFNCGKIGHKEAECRSPKKK 215
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BLAST of mRNA_F-serratus_M_contig876.20125.1 vs. uniprot
Match: F0W6E8_9STRA (Putative polyprotein n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0W6E8_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 1.080e-7
Identity = 36/117 (30.77%), Postives = 62/117 (52.99%), Query Frame = 1 
Query:  118 MMEVDKLAGDLHRLGDKSVTELRRCVIIVSGLSADYEMECRMLENNPDGLNRGEIERVVGNQYNRLLRQQQDSKALSASRGTITANRENGKNRRPSNKFEGKCFNCGKRGHRAVECK 468
            MM+ DKL  ++  + D  + +    VI++  L  D++   R+LE+ P G++    +  +  ++ R+  ++    AL A+RG I+  +          +F GKCF CGKRGHR  EC+
Sbjct:    4 MMKFDKLTMEIAAMED-GLNDQEMIVILLGSLPVDFDPIVRILESMP-GIDLISAKGTLQREWERMQNRESSEVALQATRGRISKKKYQRHPGTLGEEFNGKCFQCGKRGHRKNECR 118
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BLAST of mRNA_F-serratus_M_contig876.20125.1 vs. uniprot
Match: F0X0S7_9STRA (Putative polyprotein n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0X0S7_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 1.580e-6
Identity = 34/117 (29.06%), Postives = 59/117 (50.43%), Query Frame = 1 
Query:  118 MMEVDKLAGDLHRLGDKSVTELRRCVIIVSGLSADYEMECRMLENNPDGLNRGEIERVVGNQYNRLLRQQQDSKALSASRGTITANRENGKNRRPSNKFEGKCFNCGKRGHRAVECK 468
            MM+ DKL  ++  +GD  + +    VI++  L  +++   R+LEN   G++    +     ++ R+  ++     L  +RG I+  +          +F GKCF CGKRGHR  EC+
Sbjct:    4 MMKFDKLTMEMAAMGD-GLNDQEMLVILLGSLPLNFDPIVRILENIT-GIDLMSAKETPRREWGRIKNRESSEVTLEVTRGRISKKKYQRNPGTVGEEFNGKCFQCGKRGHRKYECR 118
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig876.20125.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A329S4C9_9STRA3.420e-826.25CCHC-type domain-containing protein n=1 Tax=Phytop... [more]
F0W6E8_9STRA1.080e-730.77Putative polyprotein n=1 Tax=Albugo laibachii Nc14... [more]
F0X0S7_9STRA1.580e-629.06Putative polyprotein n=1 Tax=Albugo laibachii Nc14... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig876contigF-serratus_M_contig876:321100..321618 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size519
Cds size519
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932556.6947792-CDS-F-serratus_M_contig876:321099..3216181622932556.6947792-CDS-F-serratus_M_contig876:321099..321618Fucus serratus maleCDSF-serratus_M_contig876 321100..321618 +
1690964364.20795-CDS-F-serratus_M_contig876:321099..3216181690964364.20795-CDS-F-serratus_M_contig876:321099..321618Fucus serratus maleCDSF-serratus_M_contig876 321100..321618 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig876.20125.1prot_F-serratus_M_contig876.20125.1Fucus serratus malepolypeptideF-serratus_M_contig876 321100..321618 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig876.20125.1

>prot_F-serratus_M_contig876.20125.1 ID=prot_F-serratus_M_contig876.20125.1|Name=mRNA_F-serratus_M_contig876.20125.1|organism=Fucus serratus male|type=polypeptide|length=173bp
EAWRNLEHHYRAKGTREILRLSHEINGKTMEPGSDPFKFMMEVDKLAGDL
HRLGDKSVTELRRCVIIVSGLSADYEMECRMLENNPDGLNRGEIERVVGN
QYNRLLRQQQDSKALSASRGTITANRENGKNRRPSNKFEGKCFNCGKRGH
RAVECKGTKKKNEKPGAAAEKRR
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mRNA from alignment at F-serratus_M_contig876:321100..321618+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig876.20125.1 ID=mRNA_F-serratus_M_contig876.20125.1|Name=mRNA_F-serratus_M_contig876.20125.1|organism=Fucus serratus male|type=mRNA|length=519bp|location=Sequence derived from alignment at F-serratus_M_contig876:321100..321618+ (Fucus serratus male)
GAGGCATGGCGTAACCTTGAACATCACTATAGAGCAAAGGGTACCAGAGA
AATTCTTCGCTTGTCGCATGAAATAAACGGAAAAACAATGGAGCCAGGTA
GTGATCCATTCAAATTCATGATGGAAGTCGACAAGCTGGCAGGAGACTTG
CACCGTCTAGGCGACAAATCAGTGACTGAACTAAGAAGATGCGTGATTAT
TGTGTCCGGTTTGTCTGCTGATTATGAGATGGAATGCCGTATGCTAGAGA
ACAACCCCGATGGTCTTAACAGGGGTGAGATTGAACGTGTTGTAGGGAAC
CAGTACAACAGACTTCTCAGACAGCAACAGGACTCGAAGGCATTGTCAGC
GTCGAGGGGCACCATCACGGCAAACCGAGAAAACGGGAAGAATAGGAGAC
CCAGTAACAAGTTCGAAGGAAAATGCTTTAACTGTGGAAAGAGAGGGCAC
CGTGCTGTGGAATGTAAGGGCACGAAGAAGAAGAACGAGAAACCCGGAGC
TGCCGCCGAGAAAAGGAGG
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Coding sequence (CDS) from alignment at F-serratus_M_contig876:321100..321618+

>mRNA_F-serratus_M_contig876.20125.1 ID=mRNA_F-serratus_M_contig876.20125.1|Name=mRNA_F-serratus_M_contig876.20125.1|organism=Fucus serratus male|type=CDS|length=1038bp|location=Sequence derived from alignment at F-serratus_M_contig876:321100..321618+ (Fucus serratus male)
GAGGCATGGCGTAACCTTGAACATCACTATAGAGCAAAGGGTACCAGAGA
AATTCTTCGCTTGTCGCATGAAATAAACGGAAAAACAATGGAGCCAGGTA
GTGATCCATTCAAATTCATGATGGAAGTCGACAAGCTGGCAGGAGACTTG
CACCGTCTAGGCGACAAATCAGTGACTGAACTAAGAAGATGCGTGATTAT
TGTGTCCGGTTTGTCTGCTGATTATGAGATGGAATGCCGTATGCTAGAGA
ACAACCCCGATGGTCTTAACAGGGGTGAGATTGAACGTGTTGTAGGGAAC
CAGTACAACAGACTTCTCAGACAGCAACAGGACTCGAAGGCATTGTCAGC
GTCGAGGGGCACCATCACGGCAAACCGAGAAAACGGGAAGAATAGGAGAC
CCAGTAACAAGTTCGAAGGAAAATGCTTTAACTGTGGAAAGAGAGGGCAC
CGTGCTGTGGAATGTAAGGGCACGAAGAAGAAGAACGAGAAACCCGGAGC
TGCCGCCGAGAAAAGGAGGGAGGCATGGCGTAACCTTGAACATCACTATA
GAGCAAAGGGTACCAGAGAAATTCTTCGCTTGTCGCATGAAATAAACGGA
AAAACAATGGAGCCAGGTAGTGATCCATTCAAATTCATGATGGAAGTCGA
CAAGCTGGCAGGAGACTTGCACCGTCTAGGCGACAAATCAGTGACTGAAC
TAAGAAGATGCGTGATTATTGTGTCCGGTTTGTCTGCTGATTATGAGATG
GAATGCCGTATGCTAGAGAACAACCCCGATGGTCTTAACAGGGGTGAGAT
TGAACGTGTTGTAGGGAACCAGTACAACAGACTTCTCAGACAGCAACAGG
ACTCGAAGGCATTGTCAGCGTCGAGGGGCACCATCACGGCAAACCGAGAA
AACGGGAAGAATAGGAGACCCAGTAACAAGTTCGAAGGAAAATGCTTTAA
CTGTGGAAAGAGAGGGCACCGTGCTGTGGAATGTAAGGGCACGAAGAAGA
AGAACGAGAAACCCGGAGCTGCCGCCGAGAAAAGGAGG
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