mRNA_F-serratus_M_contig875.20109.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig875.20109.1
Unique NamemRNA_F-serratus_M_contig875.20109.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig875.20109.1 vs. uniprot
Match: D7FV02_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV02_ECTSI)

HSP 1 Score: 68.2 bits (165), Expect = 8.810e-10
Identity = 40/78 (51.28%), Postives = 50/78 (64.10%), Query Frame = 1 
Query:  190 PVRAACLGLSCREGGEDNVTSPAHLAVSKTMQEIAVPGRIKLVEKAINDSEGAIRIPAGWKDALYYV-LGTG-GPAET 417
            P+  A L +   + GED  +   + A+SK MQEIAVPG IK+ E AI DS+G +  P GWKDALYY  LGTG  P +T
Sbjct:   50 PIAHAALAV---KQGEDMKSDVRNAAMSKRMQEIAVPGWIKVCEAAIKDSQGELVFPHGWKDALYYTTLGTGENPRQT 124
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BLAST of mRNA_F-serratus_M_contig875.20109.1 vs. uniprot
Match: A0A6H5JUT5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUT5_9PHAE)

HSP 1 Score: 59.3 bits (142), Expect = 4.340e-8
Identity = 34/69 (49.28%), Postives = 42/69 (60.87%), Query Frame = 2 
Query:   53 MAVNFAVSMKALMLPKPLDNEMLLGLRRF*DRFAGKPMT*AALKALQCVPLAWACLAVREAKTMSPAQR 259
            MAV+FA S KA MLP  L  + +  LR+F   +  K MT  ALK LQ +P   + LAV+EA  MS AQR
Sbjct:    1 MAVDFAKSQKAPMLPIDLSEDFMFALRKFCGTYGNKTMTQPALKMLQPIPRVHSALAVKEADKMSAAQR 69
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BLAST of mRNA_F-serratus_M_contig875.20109.1 vs. uniprot
Match: A0A6H5KHV4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHV4_9PHAE)

HSP 1 Score: 53.1 bits (126), Expect = 1.610e-5
Identity = 27/65 (41.54%), Postives = 40/65 (61.54%), Query Frame = 2 
Query:   53 MAVNFAVSMKALMLPKPLDNEMLLGLRRF*DRFAGKPMT*AALKALQCVPLAWACLAVREAKTMS 247
            MA++  V+ +A  LP  L N+++     F   + G P+   + KALQC P+AWACLAV+EA+  S
Sbjct:    1 MALDLEVTNRAPALPVELTNDLMDSFGIFCATYGGTPLGQQSQKALQCFPIAWACLAVKEAEKKS 65
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BLAST of mRNA_F-serratus_M_contig875.20109.1 vs. uniprot
Match: A0A6H5JVT0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVT0_9PHAE)

HSP 1 Score: 55.1 bits (131), Expect = 2.000e-5
Identity = 29/65 (44.62%), Postives = 39/65 (60.00%), Query Frame = 2 
Query:   53 MAVNFAVSMKALMLPKPLDNEMLLGLRRF*DRFAGKPMT*AALKALQCVPLAWACLAVREAKTMS 247
            MA+N  VS +A  LP  L N+++     F   + G P    + KALQC P+AWACLAV+EA+  S
Sbjct:    1 MALNLEVSNRAPALPVELTNDLMDSFGIFCATYGGTPRGQQSQKALQCFPIAWACLAVKEAEKKS 65
[Close]
BLAST of mRNA_F-serratus_M_contig875.20109.1 vs. uniprot
Match: A0A6H5KB22_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB22_9PHAE)

HSP 1 Score: 52.0 bits (123), Expect = 3.720e-5
Identity = 26/65 (40.00%), Postives = 39/65 (60.00%), Query Frame = 2 
Query:   53 MAVNFAVSMKALMLPKPLDNEMLLGLRRF*DRFAGKPMT*AALKALQCVPLAWACLAVREAKTMS 247
            M ++  V+ +A  LP  L N+++     F   + G P+   + KALQC P+AWACLAV+EA+  S
Sbjct:    1 MVLDLEVTNRASALPVELTNDLMDSFGIFCATYGGTPLGQQSQKALQCFPIAWACLAVKEAEKKS 65
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig875.20109.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FV02_ECTSI8.810e-1051.28Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JUT5_9PHAE4.340e-849.28Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KHV4_9PHAE1.610e-541.54Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JVT0_9PHAE2.000e-544.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KB22_9PHAE3.720e-540.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig875contigF-serratus_M_contig875:216970..217625 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size656
Cds size261
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig875.20109.1prot_F-serratus_M_contig875.20109.1Fucus serratus malepolypeptideF-serratus_M_contig875 217249..217509 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932554.033571-UTR-F-serratus_M_contig875:216969..2172481622932554.033571-UTR-F-serratus_M_contig875:216969..217248Fucus serratus maleUTRF-serratus_M_contig875 216970..217248 +
1690964363.0898066-UTR-F-serratus_M_contig875:216969..2172481690964363.0898066-UTR-F-serratus_M_contig875:216969..217248Fucus serratus maleUTRF-serratus_M_contig875 216970..217248 +
1622932554.0671117-UTR-F-serratus_M_contig875:217509..2176251622932554.0671117-UTR-F-serratus_M_contig875:217509..217625Fucus serratus maleUTRF-serratus_M_contig875 217510..217625 +
1690964363.1247122-UTR-F-serratus_M_contig875:217509..2176251690964363.1247122-UTR-F-serratus_M_contig875:217509..217625Fucus serratus maleUTRF-serratus_M_contig875 217510..217625 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932554.0525815-CDS-F-serratus_M_contig875:217248..2175091622932554.0525815-CDS-F-serratus_M_contig875:217248..217509Fucus serratus maleCDSF-serratus_M_contig875 217249..217509 +
1690964363.1096256-CDS-F-serratus_M_contig875:217248..2175091690964363.1096256-CDS-F-serratus_M_contig875:217248..217509Fucus serratus maleCDSF-serratus_M_contig875 217249..217509 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig875.20109.1

>prot_F-serratus_M_contig875.20109.1 ID=prot_F-serratus_M_contig875.20109.1|Name=mRNA_F-serratus_M_contig875.20109.1|organism=Fucus serratus male|type=polypeptide|length=87bp
MQEIAVPGRIKLVEKAINDSEGAIRIPAGWKDALYYVLGTGGPAETCAFH
VAVTRLLVYISALTLSPCLLVVGVIAVAHTAVLHDE*
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mRNA from alignment at F-serratus_M_contig875:216970..217625+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig875.20109.1 ID=mRNA_F-serratus_M_contig875.20109.1|Name=mRNA_F-serratus_M_contig875.20109.1|organism=Fucus serratus male|type=mRNA|length=656bp|location=Sequence derived from alignment at F-serratus_M_contig875:216970..217625+ (Fucus serratus male)
CTACACCTCACCCAGCACAACCAACGCCCGGCTGAAACCAGCATAACACA
ACATGGCCGTCAACTTCGCAGTCTCCATGAAGGCGCTGATGCTCCCAAAA
CCGCTCGACAACGAGATGCTGCTTGGGCTCCGCAGGTTCTGAGACAGATT
CGCTGGCAAGCCGATGACCTAGGCAGCGCTAAAGGCGCTCCAGTGCGTGC
CGCTTGCCTGGGCTTGTCTTGCCGTGAGGGAGGCGAAGACAATGTCACCA
GCCCAGCGCACTTAGCGGTGTCGAAAACCATGCAAGAGATCGCGGTTCCG
GGAAGGATCAAGCTAGTCGAGAAGGCGATCAACGACTCGGAGGGCGCCAT
CAGAATACCAGCCGGCTGGAAAGACGCGCTGTACTACGTTCTCGGGACAG
GTGGTCCCGCTGAAACATGCGCCTTTCACGTTGCGGTAACACGGCTGCTG
GTATACATCTCAGCACTAACTTTAAGTCCCTGTCTGCTTGTAGTTGGGGT
GATTGCGGTTGCACACACAGCAGTACTTCATGATGAGTAGACGAGCTCAA
ATCCAACGGCTGCATGCAGCTTTCAACTTCAAAAATATTTCTGTACGTTG
GCCTCACAAGTGTGATGGTGTAGCCATGCAGGACTGCTGTTATAATATAA
AGAAAA
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Coding sequence (CDS) from alignment at F-serratus_M_contig875:216970..217625+

>mRNA_F-serratus_M_contig875.20109.1 ID=mRNA_F-serratus_M_contig875.20109.1|Name=mRNA_F-serratus_M_contig875.20109.1|organism=Fucus serratus male|type=CDS|length=522bp|location=Sequence derived from alignment at F-serratus_M_contig875:216970..217625+ (Fucus serratus male)
ATGCAAGAGATCGCGGTTCCGGGAAGGATCAAGCTAGTCGAGAAGGCGAT
CAACGACTCGGAGGGCGCCATCAGAATACCAGCCGGCTGGAAAGACGCGC
TGTACTACGTTCTCGGGACAGGTGGTCCCGCTGAAACATGCGCCTTTCAC
GTTGCGGTAACACGGCTGCTGGTATACATCTCAGCACTAACTTTAAGTCC
CTGTCTGCTTGTAGTTGGGGTGATTGCGGTTGCACACACAGCAGTACTTC
ATGATGAGTAGATGCAAGAGATCGCGGTTCCGGGAAGGATCAAGCTAGTC
GAGAAGGCGATCAACGACTCGGAGGGCGCCATCAGAATACCAGCCGGCTG
GAAAGACGCGCTGTACTACGTTCTCGGGACAGGTGGTCCCGCTGAAACAT
GCGCCTTTCACGTTGCGGTAACACGGCTGCTGGTATACATCTCAGCACTA
ACTTTAAGTCCCTGTCTGCTTGTAGTTGGGGTGATTGCGGTTGCACACAC
AGCAGTACTTCATGATGAGTAG
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