mRNA_F-serratus_M_contig875.20107.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig875.20107.1
Unique NamemRNA_F-serratus_M_contig875.20107.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig875.20107.1 vs. uniprot
Match: A0A6H5JP49_9PHAE (Pyr_redox_2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP49_9PHAE)

HSP 1 Score: 119 bits (299), Expect = 7.290e-32
Identity = 56/67 (83.58%), Postives = 60/67 (89.55%), Query Frame = 1
Query:    1 QLLWGGIKQIPRNLIVVGAGVIGMEYACMINVIPGTTVTVVDPRPDVLPFADGDVIESLQYAMRQQG 201
            QLLWGGI  IPR+LIVVGAGVIGMEYACMINV+PGTTVTV+DPRP VL FAD DVIE+LQY MRQ G
Sbjct:  139 QLLWGGITHIPRDLIVVGAGVIGMEYACMINVVPGTTVTVIDPRPTVLSFADNDVIENLQYTMRQNG 205          
BLAST of mRNA_F-serratus_M_contig875.20107.1 vs. uniprot
Match: D7FHH4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHH4_ECTSI)

HSP 1 Score: 119 bits (299), Expect = 4.570e-30
Identity = 56/67 (83.58%), Postives = 60/67 (89.55%), Query Frame = 1
Query:    1 QLLWGGIKQIPRNLIVVGAGVIGMEYACMINVIPGTTVTVVDPRPDVLPFADGDVIESLQYAMRQQG 201
            QLLWGGI  IPR+LIVVGAGVIGMEYACMINV+PGTTVTV+DPRP VL FAD DVIE+LQY MRQ G
Sbjct:  172 QLLWGGITHIPRDLIVVGAGVIGMEYACMINVVPGTTVTVIDPRPTVLSFADNDVIENLQYTMRQNG 238          
BLAST of mRNA_F-serratus_M_contig875.20107.1 vs. uniprot
Match: A0A7S3XQA5_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XQA5_HETAK)

HSP 1 Score: 105 bits (261), Expect = 1.400e-27
Identity = 45/67 (67.16%), Postives = 58/67 (86.57%), Query Frame = 1
Query:    1 QLLWGGIKQIPRNLIVVGAGVIGMEYACMINVIPGTTVTVVDPRPDVLPFADGDVIESLQYAMRQQG 201
            Q+LWGG++++PR+LIVVGAGVIGMEYA MINV+PGT VT+VDPR  VL F DG++++SL Y MR +G
Sbjct:   48 QILWGGVREVPRDLIVVGAGVIGMEYASMINVVPGTVVTIVDPRTSVLGFVDGEIVDSLMYQMRLRG 114          
BLAST of mRNA_F-serratus_M_contig875.20107.1 vs. uniprot
Match: W7TS12_9STRA (Soluble pyridine nucleotide transhydrogenase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TS12_9STRA)

HSP 1 Score: 101 bits (251), Expect = 4.150e-26
Identity = 44/67 (65.67%), Postives = 57/67 (85.07%), Query Frame = 1
Query:    1 QLLWGGIKQIPRNLIVVGAGVIGMEYACMINVIPGTTVTVVDPRPDVLPFADGDVIESLQYAMRQQG 201
            QLLWGGI ++PR+ IVVGAGVIG+EYA MINV+PGT VT++DPRP +L FAD +V+++L Y+MR  G
Sbjct:   28 QLLWGGIDRVPRSFIVVGAGVIGIEYASMINVLPGTNVTIIDPRPSLLGFADREVVDALMYSMRHYG 94          
BLAST of mRNA_F-serratus_M_contig875.20107.1 vs. uniprot
Match: D7FKJ5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKJ5_ECTSI)

HSP 1 Score: 103 bits (258), Expect = 3.120e-24
Identity = 48/67 (71.64%), Postives = 59/67 (88.06%), Query Frame = 1
Query:    1 QLLWGGIKQIPRNLIVVGAGVIGMEYACMINVIPGTTVTVVDPRPDVLPFADGDVIESLQYAMRQQG 201
            QLLWGG+ ++PR+LIVVGAGVIGMEYA MINVIPGTTVTV+DPR +VL FAD +V ++L Y+MR+ G
Sbjct:  224 QLLWGGVDRVPRDLIVVGAGVIGMEYASMINVIPGTTVTVIDPRDEVLGFADREVTQALCYSMRKNG 290          
BLAST of mRNA_F-serratus_M_contig875.20107.1 vs. uniprot
Match: A0A4D9CNB1_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CNB1_9STRA)

HSP 1 Score: 101 bits (252), Expect = 1.570e-23
Identity = 44/67 (65.67%), Postives = 58/67 (86.57%), Query Frame = 1
Query:    1 QLLWGGIKQIPRNLIVVGAGVIGMEYACMINVIPGTTVTVVDPRPDVLPFADGDVIESLQYAMRQQG 201
            QLLWGGI ++PR+ IVVGAGVIG+EYA MINV+PGT VT++DPRP++L FAD +V+++L Y+MR  G
Sbjct:  243 QLLWGGIDRVPRSFIVVGAGVIGIEYASMINVLPGTNVTIIDPRPNLLGFADREVVDALMYSMRHYG 309          
BLAST of mRNA_F-serratus_M_contig875.20107.1 vs. uniprot
Match: A0A835ZER9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZER9_9STRA)

HSP 1 Score: 99.8 bits (247), Expect = 9.540e-23
Identity = 43/67 (64.18%), Postives = 57/67 (85.07%), Query Frame = 1
Query:    1 QLLWGGIKQIPRNLIVVGAGVIGMEYACMINVIPGTTVTVVDPRPDVLPFADGDVIESLQYAMRQQG 201
            QLLWGG++ +PR L+VVGAGVIGMEYA M+N+IPGT VTV+DPR  +L FAD +V+++L Y+MR +G
Sbjct:  249 QLLWGGVRDVPRELMVVGAGVIGMEYASMMNIIPGTNVTVIDPRDKMLGFADTEVVQALMYSMRTKG 315          
BLAST of mRNA_F-serratus_M_contig875.20107.1 vs. uniprot
Match: W7TTE2_9STRA (Soluble pyridine nucleotide transhydrogenase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TTE2_9STRA)

HSP 1 Score: 97.8 bits (242), Expect = 4.520e-22
Identity = 46/67 (68.66%), Postives = 56/67 (83.58%), Query Frame = 1
Query:    1 QLLWGGIKQIPRNLIVVGAGVIGMEYACMINVIPGTTVTVVDPRPDVLPFADGDVIESLQYAMRQQG 201
             LL G ++++PR LIVVGAGVIGMEYA M NVIPGT VTV+D RPDVL FAD ++I+SL+Y MRQ+G
Sbjct:  259 DLLSGSLQRVPRELIVVGAGVIGMEYASMFNVIPGTRVTVIDGRPDVLTFADKEIIQSLEYEMRQKG 325          
BLAST of mRNA_F-serratus_M_contig875.20107.1 vs. uniprot
Match: F0VZ15_9STRA (Soluble pyridine nucleotide transhydrogenase putative n=2 Tax=Albugo TaxID=65356 RepID=F0VZ15_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 2.130e-21
Identity = 42/67 (62.69%), Postives = 55/67 (82.09%), Query Frame = 1
Query:    1 QLLWGGIKQIPRNLIVVGAGVIGMEYACMINVIPGTTVTVVDPRPDVLPFADGDVIESLQYAMRQQG 201
            Q+LWGG+K +P+ LIVVGAGVIGMEYA M+++IPG  VTV+D R ++L  AD +V+E+L YAMRQ G
Sbjct:  235 QILWGGVKSVPKRLIVVGAGVIGMEYASMMSIIPGAQVTVIDGRKEILEMADREVVEALTYAMRQTG 301          
BLAST of mRNA_F-serratus_M_contig875.20107.1 vs. uniprot
Match: A0A8K1C723_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C723_PYTOL)

HSP 1 Score: 95.5 bits (236), Expect = 2.920e-21
Identity = 43/67 (64.18%), Postives = 55/67 (82.09%), Query Frame = 1
Query:    1 QLLWGGIKQIPRNLIVVGAGVIGMEYACMINVIPGTTVTVVDPRPDVLPFADGDVIESLQYAMRQQG 201
            Q+LWGGI+ +P+ LIVVGAGVIGMEYA M+++IPGT VTV+D R ++L  AD +V E+L YAMRQ G
Sbjct:  230 QILWGGIQSVPKRLIVVGAGVIGMEYASMMSIIPGTEVTVIDGRKEILDMADKEVTEALSYAMRQTG 296          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig875.20107.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JP49_9PHAE7.290e-3283.58Pyr_redox_2 domain-containing protein n=1 Tax=Ecto... [more]
D7FHH4_ECTSI4.570e-3083.58Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S3XQA5_HETAK1.400e-2767.16Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
W7TS12_9STRA4.150e-2665.67Soluble pyridine nucleotide transhydrogenase n=1 T... [more]
D7FKJ5_ECTSI3.120e-2471.64Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A4D9CNB1_9STRA1.570e-2365.67Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A835ZER9_9STRA9.540e-2364.18Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
W7TTE2_9STRA4.520e-2268.66Soluble pyridine nucleotide transhydrogenase n=2 T... [more]
F0VZ15_9STRA2.130e-2162.69Soluble pyridine nucleotide transhydrogenase putat... [more]
A0A8K1C723_PYTOL2.920e-2164.18Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig875contigF-serratus_M_contig875:6841..7936 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score119.0
Seed ortholog evalue9.5e-25
Seed eggNOG ortholog2880.D7FHH4
Hectar predicted targeting categoryother localisation
EggNOG free text desc.dihydrolipoyl dehydrogenase activity
EggNOG OGsCOG1249@1,KOG1335@2759
Ec32 ortholog descriptionFAD/NAD-linked reductase, dimerisation domain
Ec32 orthologEc-12_001840.1
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size228
Cds size228
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932553.899239-CDS-F-serratus_M_contig875:6840..68751622932553.899239-CDS-F-serratus_M_contig875:6840..6875Fucus serratus maleCDSF-serratus_M_contig875 6841..6875 +
1690964363.0380862-CDS-F-serratus_M_contig875:6840..68751690964363.0380862-CDS-F-serratus_M_contig875:6840..6875Fucus serratus maleCDSF-serratus_M_contig875 6841..6875 +
1622932553.9174452-CDS-F-serratus_M_contig875:7743..79361622932553.9174452-CDS-F-serratus_M_contig875:7743..7936Fucus serratus maleCDSF-serratus_M_contig875 7744..7936 +
1690964363.0533922-CDS-F-serratus_M_contig875:7743..79361690964363.0533922-CDS-F-serratus_M_contig875:7743..7936Fucus serratus maleCDSF-serratus_M_contig875 7744..7936 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig875.20107.1prot_F-serratus_M_contig875.20107.1Fucus serratus malepolypeptideF-serratus_M_contig875 6841..7936 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig875.20107.1

>prot_F-serratus_M_contig875.20107.1 ID=prot_F-serratus_M_contig875.20107.1|Name=mRNA_F-serratus_M_contig875.20107.1|organism=Fucus serratus male|type=polypeptide|length=76bp
QLLWGGIKQIPRNLIVVGAGVIGMEYACMINVIPGTTVTVVDPRPDVLPF
ADGDVIESLQYAMRQQGELCRACCW*
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mRNA from alignment at F-serratus_M_contig875:6841..7936+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig875.20107.1 ID=mRNA_F-serratus_M_contig875.20107.1|Name=mRNA_F-serratus_M_contig875.20107.1|organism=Fucus serratus male|type=mRNA|length=1096bp|location=Sequence derived from alignment at F-serratus_M_contig875:6841..7936+ (Fucus serratus male)
CAGCTGCTGTGGGGAGGCATCAAGCAAATTCCAAGGTGTGTCGAAGACGT GGATTGTGGGTGTGCGATCGAGCGAATAAAGTATTACCACGAGCTGAGGC TGCTGCTGCTGCTGCTACTGCTGAGCCGAAAGTCTCAACGTTAAACGCTT ACAGGTCTAGTAGGTAACCTGCATGCCTGCTTGTGCGGAAGTCGTGAGTT CGATTCTTAGCTTGAGCAGAATTTGTGTTCTTTCTTTCGTAACGGAAAGC GTGGGAACGTGAGTAAGTAAAATTCAACCATTGGTTGACGAGTTGTAAGA GTGCTGAACTTGCATCGCGATAAAAACTAGTAGTGTAAGGCGTGAACCGG GGAGAGGTGGGAAGATCCTTTGTGACCACAGGCAGGGTGGTAATTAGAGG TCCATCGGCTATAAGTGTGATAAAAAAATAAAAAAATAGCTACACATAGG TGTACTGTTTTAAAGAGAAATCATGCCGTAGAAAGAGCCTACCCCCCCCA CCCCAGCTCTCTTTCTCATTAATAGCTTAGACATGCCTCGATCGATACCA ATGTTCCCCGGTACACAGGTAGGAATGTATGATTACTGGAAGTCGCGCCG TATGGGGGGGGGGGAGGTGTCACAGCTACACTCTAAGCTCAAGTTATTTT TCTATGCACATTATTTACTTTCTTTTGGAGCTAGATTACTCGGAGAACTC TGACCTCGCGGATCGTATGGCAGAAGCACCGCGGCCGGCGTTTCATATCC TACTCGACTTACTATTCATTGTAGGTAGGTAGGACTTTGTAGGCTATCGG TTTGTGGATACATGTTTTTTTCTTTTTTTTTTTTTTTTTAATGTTTTTTT AATGTATTTTTGTGGGTTCGGATGTACGGTGTGTGCCGTCCCCCTCCAAC AAGAAACTTGATCGTCGTCGGCGCCGGAGTGATCGGCATGGAGTATGCGT GCATGATCAACGTAATACCGGGGACGACCGTTACCGTTGTCGACCCTCGG CCCGACGTGCTACCCTTCGCGGACGGCGACGTCATCGAGAGCTTGCAGTA CGCCATGCGCCAGCAAGGTGAGCTGTGCCGTGCTTGCTGTTGGTGA
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Coding sequence (CDS) from alignment at F-serratus_M_contig875:6841..7936+

>mRNA_F-serratus_M_contig875.20107.1 ID=mRNA_F-serratus_M_contig875.20107.1|Name=mRNA_F-serratus_M_contig875.20107.1|organism=Fucus serratus male|type=CDS|length=456bp|location=Sequence derived from alignment at F-serratus_M_contig875:6841..7936+ (Fucus serratus male)
CAGCTGCTGTGGGGAGGCATCAAGCAAATTCCAAGCAGCTGCTGTGGGGA
GGCATCAAGCAAATTCCAAGAAACTTGATCGTCGTCGGCGCCGGAGTGAT
CGGCATGGAGTATGCGTGCATGATCAACGTAATACCGGGGACGACCGTTA
CCGTTGTCGACCCTCGGCCCGACGTGCTACCCTTCGCGGACGGCGACGTC
ATCGAGAGCTTGCAGTACGCCATGCGCCAGCAAGGTGAGCTGTGCCGTGC
TTGCTGTTGGTGAAAACTTGATCGTCGTCGGCGCCGGAGTGATCGGCATG
GAGTATGCGTGCATGATCAACGTAATACCGGGGACGACCGTTACCGTTGT
CGACCCTCGGCCCGACGTGCTACCCTTCGCGGACGGCGACGTCATCGAGA
GCTTGCAGTACGCCATGCGCCAGCAAGGTGAGCTGTGCCGTGCTTGCTGT
TGGTGA
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