mRNA_F-serratus_M_contig874.20106.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig874.20106.1
Unique NamemRNA_F-serratus_M_contig874.20106.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig874.20106.1 vs. uniprot
Match: A0A6H5JSG7_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSG7_9PHAE)

HSP 1 Score: 197 bits (500), Expect = 1.840e-59
Identity = 91/171 (53.22%), Postives = 118/171 (69.01%), Query Frame = 1
Query:    1 VGAIDGSHIPIPAPCEAAQGSYYNYKGFFSVVLLAIVDNEGLFRWICAGAPGSCGDGGIFKWSRMYKKLIADQSKPPSCRRLITKGRVILGDSAFANCDWLLCPYDAPATRNQRFYNFKHSGTRFVVEHAFGRLKWKFMAMKNRMFFNVDSVPDVIVYCVALYNFILLHEG 513
            +GAIDGSHI I AP ++ Q SYYNYK F+S+ LLAIVDNEG+FRW C+GAPG+C D G+   +  Y+ +  DQ++P S R+L   G  ILGDSAFA   W+  P   P  R +RF+N+KHS  RF VEHAFGRLK KF A+ N +  ++D  P ++  CV L+NFI + EG
Sbjct:   89 IGAIDGSHIKILAPPDSLQTSYYNYKHFYSISLLAIVDNEGMFRWFCSGAPGACADSGVLTDTAFYEMVQEDQAQPVSSRQLFANGACILGDSAFAESPWMRTPIGKPDNRAERFFNYKHSSMRFRVEHAFGRLKKKFRALLNGLDCHLDHCPTIVNACVILHNFIFMCEG 259          
BLAST of mRNA_F-serratus_M_contig874.20106.1 vs. uniprot
Match: A0A6H5JA50_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA50_9PHAE)

HSP 1 Score: 166 bits (419), Expect = 3.340e-48
Identity = 75/132 (56.82%), Postives = 91/132 (68.94%), Query Frame = 1
Query:    1 VGAIDGSHIPIPAPCEAAQGSYYNYKGFFSVVLLAIVDNEGLFRWICAGAPGSCGDGGIFKWSRMYKKLIADQSKPPSCRRLITKGRVILGDSAFANCDWLLCPYDAPATRNQRFYNFKHSGTRFVVEHAFG 396
            VG IDGSHI IPAP E  Q +YYNYK F+S++LLAIVDN GLFRW C+G  GSCGD G+ + ++ YK    +QSKP   RR+   G  ILGDSAFA   W+  PY  P++R QR++NF HS  R  VEHA G
Sbjct:  116 VGGIDGSHIKIPAPTEHQQLAYYNYKKFYSIILLAIVDNRGLFRWTCSGCAGSCGDSGVLQHTKFYKAAQREQSKPVDERRIFANGACILGDSAFAEGPWMRTPYTMPSSREQRYFNFMHSSMRMRVEHALG 247          
BLAST of mRNA_F-serratus_M_contig874.20106.1 vs. uniprot
Match: UPI000C20CE8C (uncharacterized protein LOC111422591 n=1 Tax=Onthophagus taurus TaxID=166361 RepID=UPI000C20CE8C)

HSP 1 Score: 117 bits (292), Expect = 1.920e-28
Identity = 69/173 (39.88%), Postives = 98/173 (56.65%), Query Frame = 1
Query:    1 VGAIDGSHIPIPAPCEAAQGSYYNYKGFFSVVLLAIVDNEGLFRWICAGAPGSCGDGGIFKWSRMYKKLIADQSKPPSCRRL----ITK-GRVILGDSAFANCDWLLCPYDAPATRN--QRFYNFKHSGTRFVVEHAFGRLKWKFMAMKNRMFFNVDSVPDVIVYCVALYNFI 498
            +GA+DG HI I AP  +    YYNYK FFSVVLLA+VD+   F ++  G  G   DGG+FK + +Y+KL   Q   P    +    +TK   VILGD AFA   +++ PY     +   +R +N++ S  R VVE+AFG +  KF  ++  M  N  S   V++  V L+NF+
Sbjct:  106 IGALDGKHISIQAPFGSGA-EYYNYKKFFSVVLLALVDSNYNFLYVNVGCQGRISDGGVFKNTTLYRKLENQQLNIPPSEIIDEENVTKIPYVILGDQAFALDRYMMTPYSGSHRKGSKERIFNYRLSRARRVVENAFGIMSSKFRVLRKPMILNPTSANKVVLATVYLHNFL 277          
BLAST of mRNA_F-serratus_M_contig874.20106.1 vs. uniprot
Match: A0A015JYP1_RHIIW (DDE Tnp4 domain-containing protein n=4 Tax=Rhizophagus irregularis TaxID=588596 RepID=A0A015JYP1_RHIIW)

HSP 1 Score: 117 bits (294), Expect = 3.650e-28
Identity = 70/166 (42.17%), Postives = 94/166 (56.63%), Query Frame = 1
Query:    1 VGAIDGSHIPIPAPCEAAQGSYYNYKGFFSVVLLAIVDNEGLFRWICAGAPGSCGDGGIFKWSRMYKKLIADQSKPPSCRRLITKGRVILGDSAFANCDWLLCPY--DAPATRNQRFYNFKHSGTRFVVEHAFGRLKWKFMAMKNRMFFNVDSVPDVIVYCVALYN 492
            +GAIDGSHIPI AP E     YYN KGF+S+VL A+VD+ G F  I  G PGS  D  IF  S +Y  L +  S  PS          ILGD+ +   +WLL PY  +   T+ Q +YN KHS TR  VE AFG+LK +F  + N +  ++++   ++     L+N
Sbjct:  192 IGAIDGSHIPIKAPKEYPM-DYYNRKGFYSIVLQAVVDSYGRFIDIFVGYPGSTHDSRIFHNSPLYYMLSSSSSVIPS-------NSYILGDAGYPCQNWLLTPYRDNGRLTQIQTYYNTKHSQTRISVEQAFGKLKSRFRCLINPIATSLETAILIVTTSCILHN 349          
BLAST of mRNA_F-serratus_M_contig874.20106.1 vs. uniprot
Match: A0A7M7NY25_STRPU (DDE Tnp4 domain-containing protein n=1 Tax=Strongylocentrotus purpuratus TaxID=7668 RepID=A0A7M7NY25_STRPU)

HSP 1 Score: 114 bits (286), Expect = 5.000e-28
Identity = 64/178 (35.96%), Postives = 98/178 (55.06%), Query Frame = 1
Query:    1 VGAIDGSHIPIPAPCEAAQGSYYNYKGFFSVVLLAIVDNEGLFRWICAGAPGSCGDGGIFKWSRMYKKLIADQSKPPSCRRLITKGRVI----LGDSAFANCDWLLCPYDAPATRN----QRFYNFKHSGTRFVVEHAFGRLKWKFMAMKNRMFFNVDSVPDVIVYCVALYNFILLHE 510
            +GA DG H+ I AP  +   +Y+NYKG+FS+V+LA+VD++  F ++  G+ GSC D GIFK S  Y  L    +  P    L      I    +GD AFA  DW++ PY   ATRN    +R +N++ S  R +VE++FG L  +F  +   M     +V  +++ C  L+N +   +
Sbjct:   60 LGAFDGKHVAIRAPSHSGS-AYHNYKGYFSIVMLAVVDSQYNFMYLDVGSNGSCSDAGIFKDSEFYSVLEEGAAALPPPEPLPDDDHSIPYFFVGDDAFALKDWMMKPY---ATRNMTKPERLFNYRLSRARRIVENSFGILAHRFRCLLTTMLQKPGNVETIVLACCCLHNLLAARK 233          
BLAST of mRNA_F-serratus_M_contig874.20106.1 vs. uniprot
Match: UPI00103F90D7 (uncharacterized protein LOC114366532 n=1 Tax=Ostrinia furnacalis TaxID=93504 RepID=UPI00103F90D7)

HSP 1 Score: 116 bits (291), Expect = 8.790e-28
Identity = 70/171 (40.94%), Postives = 100/171 (58.48%), Query Frame = 1
Query:    1 VGAIDGSHIPIPAPCEAAQGSYYNYKGFFSVVLLAIVDNEGLFRWICAGAPGSCGDGGIFKWSRMYKKLIADQSKPPSCRRLITKGRV----ILGDSAFANCDWLLCPY-DAPATRNQRFYNFKHSGTRFVVEHAFGRLKWKFMAMKNRMFFNVDSVPDVIVYCVALYNFI 498
            +GAIDG HI I  P ++    YYNYKG FSVVLL IV+    F ++ AGA GS  DGG+FK +  Y+KL+ +Q   P+   L T   +     + D+AFA  + LL PY     T ++R YN++    R +VE+AFG L  +F   K  +  NV +VP V++   AL+N++
Sbjct:  170 LGAIDGKHIIIEKPPQSGS-LYYNYKGTFSVVLLGIVNANYEFIYVNAGANGSVSDGGVFKHTVFYEKLVNNQLHLPTPSALPTSDLIAPYCFVADNAFAINENLLKPYPQRNLTHDKRIYNYRLCRARRIVENAFGILAERFRVFKKPIQINVKNVPKVVMASCALHNYL 339          
BLAST of mRNA_F-serratus_M_contig874.20106.1 vs. uniprot
Match: A0A437ATD3_CHISP (DDE Tnp4 domain-containing protein n=2 Tax=Obtectomera TaxID=104431 RepID=A0A437ATD3_CHISP)

HSP 1 Score: 115 bits (289), Expect = 1.680e-27
Identity = 68/171 (39.77%), Postives = 96/171 (56.14%), Query Frame = 1
Query:    1 VGAIDGSHIPIPAPCEAAQGSYYNYKGFFSVVLLAIVDNEGLFRWICAGAPGSCGDGGIFKWSRMYKKLIADQSK-PPSCRRLITKGRV---ILGDSAFANCDWLLCPYDAP-ATRNQRFYNFKHSGTRFVVEHAFGRLKWKFMAMKNRMFFNVDSVPDVIVYCVALYNFI 498
            VGAIDG HI I  P  +    +YNYKGFFS VL A+V+    F +I  G  GS  DGG+   + +Y KL+ D+   PPSC    T   V    LGDSAF     ++ PY     T  +R +N++ S  R VVE+AFG L  +F   + R+   +D+V  +++ C AL+N++
Sbjct:  167 VGAIDGKHISIEKPPRSGT-LFYNYKGFFSTVLFAVVNANYEFMYIHTGINGSVSDGGVITHTSLYNKLMTDKLHLPPSCTLQGTNISVPYTFLGDSAFGINRHIMKPYPFKNITHEKRIFNYRLSRARRVVENAFGILAARFRIFRQRISVQIDNVDKIVLACCALHNYL 336          
BLAST of mRNA_F-serratus_M_contig874.20106.1 vs. uniprot
Match: A0A668AYU4_9TELE (DDE Tnp4 domain-containing protein n=1 Tax=Myripristis murdjan TaxID=586833 RepID=A0A668AYU4_9TELE)

HSP 1 Score: 112 bits (281), Expect = 1.830e-27
Identity = 67/174 (38.51%), Postives = 96/174 (55.17%), Query Frame = 1
Query:    1 VGAIDGSHIPIPAPCEAAQGSYYNYKGFFSVVLLAIVDNEGLFRWICAGAPGSCGDGGIFKWSRMYKKLIADQSKPPSCRRLITK--GRVILGDSAFANCDWLLCPY--DAPATRNQRFYNFKHSGTRFVVEHAFGRLKWKFMAMKNRMFFNVDSVPDVIVYCVALYNFILLHE 510
            VGAIDGSHIPI AP E  +  YYN KG++S+VL A+VD  GLF  I  G  GS  D  + + S ++  + ++   PP  R L  +  G  ++GD A+ +  WL+ PY  +      Q  +N K S  R  VE+AFGRLK ++  +  R   +V++V  + + C  L N   LH 
Sbjct:   36 VGAIDGSHIPIIAPQEY-RTDYYNQKGWYSIVLQAVVDGRGLFWDISVGKSGSVHDATVLRASLLWSMITSENLFPPVTRSLGGEDVGYFLVGDGAYPSQPWLVKPYADNGRLCHEQLVFNEKISRARVCVENAFGRLKGRWRCLMKRNDCSVETVKKMALTCCVLRNLCKLHN 208          
BLAST of mRNA_F-serratus_M_contig874.20106.1 vs. uniprot
Match: A0A8C8VR03_9SAUR (DDE Tnp4 domain-containing protein n=1 Tax=Pelusios castaneus TaxID=367368 RepID=A0A8C8VR03_9SAUR)

HSP 1 Score: 114 bits (284), Expect = 2.300e-27
Identity = 69/168 (41.07%), Postives = 94/168 (55.95%), Query Frame = 1
Query:    4 GAIDGSHIPIPAPCEAAQGSYYNYKGFFSVVLLAIVDNEGLFRWICAGAPGSCGDGGIFKWSRMYKKLIADQSKPPSCRRLITKGRV-----ILGDSAFANCDWLLCPYDAPATRNQRFYNFKHSGTRFVVEHAFGRLKWKFMAMKNRMFFNVDSVPDVIVYCVALYN 492
            GAIDG+HIPI AP   A   Y N KG+FS+VL A+VD++G F  I AG  G   D  IF+ + +Y+KL      P    + IT G V     ILGD A+    WL+ PY     R++  +N++ S  R  VE AFGRLK ++  +  R+    D++P VI  C  L+N
Sbjct:  154 GAIDGTHIPILAPDHLAT-EYINRKGYFSMVLQALVDHKGRFTDINAGWSGKVHDARIFRNTGLYRKLQGGTFFPD---QKITVGEVEMPIVILGDPAYPLMPWLMKPYTGNLDRSKERFNYRLSRCRMTVECAFGRLKGRWRCLYGRLDLAEDNIPAVIASCCVLHN 317          
BLAST of mRNA_F-serratus_M_contig874.20106.1 vs. uniprot
Match: A0A8C3XM02_CHESE (Putative nuclease HARBI1 n=2 Tax=Chelydra serpentina TaxID=8475 RepID=A0A8C3XM02_CHESE)

HSP 1 Score: 113 bits (283), Expect = 4.610e-27
Identity = 66/163 (40.49%), Postives = 90/163 (55.21%), Query Frame = 1
Query:    4 GAIDGSHIPIPAPCEAAQGSYYNYKGFFSVVLLAIVDNEGLFRWICAGAPGSCGDGGIFKWSRMYKKLIADQSKPPSCRRLITKGRVILGDSAFANCDWLLCPYDAPATRNQRFYNFKHSGTRFVVEHAFGRLKWKFMAMKNRMFFNVDSVPDVIVYCVALYN 492
            GAIDG+HIPI  P E   G Y N KG+FS+VL A+VD++G F  I  G PG   D  +FK S ++K+L   Q  P           VILGD A+    WL+ PY       +  +N++ S  R VVE AFGRLK ++ ++  R   +  ++P VI  C  L+N
Sbjct:  152 GAIDGTHIPILGP-EHQGGQYINRKGYFSMVLQALVDHKGRFTNINVGWPGKVHDARVFKNSGLFKRL--QQGMPT----------VILGDPAYPLMPWLMKPYTGALDTEKELFNYRLSKCRMVVECAFGRLKARWRSLLTRSDLSPKNIPIVIAACCVLHN 301          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig874.20106.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JSG7_9PHAE1.840e-5953.22DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5JA50_9PHAE3.340e-4856.82DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
UPI000C20CE8C1.920e-2839.88uncharacterized protein LOC111422591 n=1 Tax=Ontho... [more]
A0A015JYP1_RHIIW3.650e-2842.17DDE Tnp4 domain-containing protein n=4 Tax=Rhizoph... [more]
A0A7M7NY25_STRPU5.000e-2835.96DDE Tnp4 domain-containing protein n=1 Tax=Strongy... [more]
UPI00103F90D78.790e-2840.94uncharacterized protein LOC114366532 n=1 Tax=Ostri... [more]
A0A437ATD3_CHISP1.680e-2739.77DDE Tnp4 domain-containing protein n=2 Tax=Obtecto... [more]
A0A668AYU4_9TELE1.830e-2738.51DDE Tnp4 domain-containing protein n=1 Tax=Myripri... [more]
A0A8C8VR03_9SAUR2.300e-2741.07DDE Tnp4 domain-containing protein n=1 Tax=Pelusio... [more]
A0A8C3XM02_CHESE4.610e-2740.49Putative nuclease HARBI1 n=2 Tax=Chelydra serpenti... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig874contigF-serratus_M_contig874:20805..21320 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score127.9
Seed ortholog evalue4.6e-27
Seed eggNOG ortholog400682.PAC_15717646
Hectar predicted targeting categoryother localisation
EggNOG free text desc.DDE superfamily endonuclease
EggNOG OGs38NKY@33154,3BK0T@33208,KOG4585@1,KOG4585@2759
COG Functional cat.L
Best tax levelMetazoa
Best eggNOG OGNA|NA|NA
Exons1
Model size516
Cds size516
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932553.5561268-CDS-F-serratus_M_contig874:20804..213201622932553.5561268-CDS-F-serratus_M_contig874:20804..21320Fucus serratus maleCDSF-serratus_M_contig874 20805..21320 -
1690964362.8726652-CDS-F-serratus_M_contig874:20804..213201690964362.8726652-CDS-F-serratus_M_contig874:20804..21320Fucus serratus maleCDSF-serratus_M_contig874 20805..21320 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig874.20106.1prot_F-serratus_M_contig874.20106.1Fucus serratus malepolypeptideF-serratus_M_contig874 20805..21320 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig874.20106.1

>prot_F-serratus_M_contig874.20106.1 ID=prot_F-serratus_M_contig874.20106.1|Name=mRNA_F-serratus_M_contig874.20106.1|organism=Fucus serratus male|type=polypeptide|length=172bp
VGAIDGSHIPIPAPCEAAQGSYYNYKGFFSVVLLAIVDNEGLFRWICAGA
PGSCGDGGIFKWSRMYKKLIADQSKPPSCRRLITKGRVILGDSAFANCDW
LLCPYDAPATRNQRFYNFKHSGTRFVVEHAFGRLKWKFMAMKNRMFFNVD
SVPDVIVYCVALYNFILLHEGI
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mRNA from alignment at F-serratus_M_contig874:20805..21320-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig874.20106.1 ID=mRNA_F-serratus_M_contig874.20106.1|Name=mRNA_F-serratus_M_contig874.20106.1|organism=Fucus serratus male|type=mRNA|length=516bp|location=Sequence derived from alignment at F-serratus_M_contig874:20805..21320- (Fucus serratus male)
GTAGGGGCCATCGACGGGAGTCATATTCCTATTCCCGCCCCTTGCGAGGC CGCCCAGGGGAGCTACTACAATTACAAGGGATTCTTCTCCGTCGTGCTAT TAGCGATCGTAGACAACGAAGGACTCTTCAGGTGGATCTGCGCTGGAGCG CCCGGGTCGTGCGGCGACGGAGGGATATTCAAGTGGTCGCGAATGTACAA GAAACTGATAGCCGACCAGTCTAAGCCACCTTCTTGCAGGAGACTCATCA CCAAAGGACGGGTGATCCTGGGCGACTCCGCATTTGCCAACTGCGACTGG CTGCTGTGCCCGTACGACGCACCCGCTACACGCAACCAGAGGTTTTACAA CTTTAAGCACTCTGGAACACGCTTCGTTGTAGAGCACGCATTCGGGAGAC TCAAATGGAAATTCATGGCGATGAAAAACCGCATGTTCTTTAACGTGGAC TCTGTCCCCGATGTCATTGTGTACTGTGTGGCCCTTTACAACTTCATACT GTTACATGAGGGTATT
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Coding sequence (CDS) from alignment at F-serratus_M_contig874:20805..21320-

>mRNA_F-serratus_M_contig874.20106.1 ID=mRNA_F-serratus_M_contig874.20106.1|Name=mRNA_F-serratus_M_contig874.20106.1|organism=Fucus serratus male|type=CDS|length=1032bp|location=Sequence derived from alignment at F-serratus_M_contig874:20805..21320- (Fucus serratus male)
GTAGGGGCCATCGACGGGAGTCATATTCCTATTCCCGCCCCTTGCGAGGC
CGCCCAGGGGAGCTACTACAATTACAAGGGATTCTTCTCCGTCGTGCTAT
TAGCGATCGTAGACAACGAAGGACTCTTCAGGTGGATCTGCGCTGGAGCG
CCCGGGTCGTGCGGCGACGGAGGGATATTCAAGTGGTCGCGAATGTACAA
GAAACTGATAGCCGACCAGTCTAAGCCACCTTCTTGCAGGAGACTCATCA
CCAAAGGACGGGTGATCCTGGGCGACTCCGCATTTGCCAACTGCGACTGG
CTGCTGTGCCCGTACGACGCACCCGCTACACGCAACCAGAGGTTTTACAA
CTTTAAGCACTCTGGAACACGCTTCGTTGTAGAGCACGCATTCGGGAGAC
TCAAATGGAAATTCATGGCGATGAAAAACCGCATGTTCTTTAACGTGGAC
TCTGTCCCCGATGTCATTGTGTACTGTGTGGCCCTTTACAACTTCATACT
GTTACATGAGGGTATTGTAGGGGCCATCGACGGGAGTCATATTCCTATTC
CCGCCCCTTGCGAGGCCGCCCAGGGGAGCTACTACAATTACAAGGGATTC
TTCTCCGTCGTGCTATTAGCGATCGTAGACAACGAAGGACTCTTCAGGTG
GATCTGCGCTGGAGCGCCCGGGTCGTGCGGCGACGGAGGGATATTCAAGT
GGTCGCGAATGTACAAGAAACTGATAGCCGACCAGTCTAAGCCACCTTCT
TGCAGGAGACTCATCACCAAAGGACGGGTGATCCTGGGCGACTCCGCATT
TGCCAACTGCGACTGGCTGCTGTGCCCGTACGACGCACCCGCTACACGCA
ACCAGAGGTTTTACAACTTTAAGCACTCTGGAACACGCTTCGTTGTAGAG
CACGCATTCGGGAGACTCAAATGGAAATTCATGGCGATGAAAAACCGCAT
GTTCTTTAACGTGGACTCTGTCCCCGATGTCATTGTGTACTGTGTGGCCC
TTTACAACTTCATACTGTTACATGAGGGTATT
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