mRNA_F-serratus_M_contig873.20104.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig873.20104.1
Unique NamemRNA_F-serratus_M_contig873.20104.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig873.20104.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig873contigF-serratus_M_contig873:295220..300813 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons5
Model size2451
Cds size714
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932553.0733092-UTR-F-serratus_M_contig873:295219..2953361622932553.0733092-UTR-F-serratus_M_contig873:295219..295336Fucus serratus maleUTRF-serratus_M_contig873 295220..295336 +
1690964362.6808329-UTR-F-serratus_M_contig873:295219..2953361690964362.6808329-UTR-F-serratus_M_contig873:295219..295336Fucus serratus maleUTRF-serratus_M_contig873 295220..295336 +
1622932553.16982-UTR-F-serratus_M_contig873:298625..2986261622932553.16982-UTR-F-serratus_M_contig873:298625..298626Fucus serratus maleUTRF-serratus_M_contig873 298626..298626 +
1690964362.7537892-UTR-F-serratus_M_contig873:298625..2986261690964362.7537892-UTR-F-serratus_M_contig873:298625..298626Fucus serratus maleUTRF-serratus_M_contig873 298626..298626 +
1622932553.1877794-UTR-F-serratus_M_contig873:299194..3008131622932553.1877794-UTR-F-serratus_M_contig873:299194..300813Fucus serratus maleUTRF-serratus_M_contig873 299195..300813 +
1690964362.7642963-UTR-F-serratus_M_contig873:299194..3008131690964362.7642963-UTR-F-serratus_M_contig873:299194..300813Fucus serratus maleUTRF-serratus_M_contig873 299195..300813 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932553.0962856-CDS-F-serratus_M_contig873:295336..2957561622932553.0962856-CDS-F-serratus_M_contig873:295336..295756Fucus serratus maleCDSF-serratus_M_contig873 295337..295756 +
1690964362.7002497-CDS-F-serratus_M_contig873:295336..2957561690964362.7002497-CDS-F-serratus_M_contig873:295336..295756Fucus serratus maleCDSF-serratus_M_contig873 295337..295756 +
1622932553.1166358-CDS-F-serratus_M_contig873:296148..2961991622932553.1166358-CDS-F-serratus_M_contig873:296148..296199Fucus serratus maleCDSF-serratus_M_contig873 296149..296199 +
1690964362.715025-CDS-F-serratus_M_contig873:296148..2961991690964362.715025-CDS-F-serratus_M_contig873:296148..296199Fucus serratus maleCDSF-serratus_M_contig873 296149..296199 +
1622932553.1344604-CDS-F-serratus_M_contig873:297805..2979391622932553.1344604-CDS-F-serratus_M_contig873:297805..297939Fucus serratus maleCDSF-serratus_M_contig873 297806..297939 +
1690964362.7279391-CDS-F-serratus_M_contig873:297805..2979391690964362.7279391-CDS-F-serratus_M_contig873:297805..297939Fucus serratus maleCDSF-serratus_M_contig873 297806..297939 +
1622932553.1527185-CDS-F-serratus_M_contig873:298516..2986251622932553.1527185-CDS-F-serratus_M_contig873:298516..298625Fucus serratus maleCDSF-serratus_M_contig873 298517..298625 +
1690964362.740026-CDS-F-serratus_M_contig873:298516..2986251690964362.740026-CDS-F-serratus_M_contig873:298516..298625Fucus serratus maleCDSF-serratus_M_contig873 298517..298625 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig873.20104.1prot_F-serratus_M_contig873.20104.1Fucus serratus malepolypeptideF-serratus_M_contig873 295337..298625 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig873.20104.1

>prot_F-serratus_M_contig873.20104.1 ID=prot_F-serratus_M_contig873.20104.1|Name=mRNA_F-serratus_M_contig873.20104.1|organism=Fucus serratus male|type=polypeptide|length=238bp
MCKIFHVLLIVLHPYMFCLSASFLFCAVANCFCLRRSLCPNITHALSIIY
LRNLSYFILIIDTARSTLFPQKSSIVNSERKALTFEAVESSFFVRVLAFT
VACNDQPSTINLEPVQAPPAKTVLHHKGFHHTDTGDVPEEARHHVHPGYH
HRSGEEKVKGGWRHQDRQWHGHLQLKQLGTRFSLGRSKARERKLMIDKYA
RKEIHKVEFTDSNAGGVWMALGFVSLVFCLVVGNFQP*
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mRNA from alignment at F-serratus_M_contig873:295220..300813+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig873.20104.1 ID=mRNA_F-serratus_M_contig873.20104.1|Name=mRNA_F-serratus_M_contig873.20104.1|organism=Fucus serratus male|type=mRNA|length=5594bp|location=Sequence derived from alignment at F-serratus_M_contig873:295220..300813+ (Fucus serratus male)
ATTCTCTGTGTCCAATCAGCGGTCAGCGATCAGCGGTCCGCCTCTTTGTG
TTAATAATAGTATTAATAACAAGAGGGTATCGTTCCGTATTGACGTACCG
CACAGTACACTGTATCGATGTGTAAAATATTCCATGTACTACTAATAGTA
TTGCACCCGTACATGTTCTGCCTATCTGCATCTTTTTTATTCTGTGCCGT
GGCAAACTGTTTTTGTCTGCGAAGATCTCTCTGTCCTAATATTACACACG
CACTTTCTATTATATATCTACGCAATTTATCTTACTTTATACTTATTATC
GACACAGCACGCAGCACCCTCTTCCCTCAGAAAAGTAGTATTGTTAATAG
TGAGAGGAAGGCTTTGACTTTTGAAGCTGTGGAATCTTCTTTTTTTGTTA
GGGTGTTGGCTTTCACCGTCGCCTGTAACGATCAACCATCAACCATCAAC
CTTGAACCGGTGCAGGCTCCTCCGGCCAAGACCGTGCTCCACCATAAGGG
CTTCCACCACACCGACACGGGCGACGTCCCCGAAGAGGTGAAAGGGGTAA
TTGAATTTGACATTTGATTGGACATTCAATTGGACGTTTGATTTGGACAT
TTAAATTGCTTGTACGGGGTGAACCAAAAATAATACTTGATGTACATGTA
GAGTAGAGTACTATTATATTATTAAGACATTTTCGTTTAATACCAGTACA
GTAGCCCGAAAGCACAAGCACCCACTATTAATAGTATAATTCGCTCTCAC
AGTACCTTTATGTACGATAGGTGTATACTATAACAATTGAGTTCGAGTAT
ACGGTAGTGAAGCGTTGACTCTATCAGTAGCTGGTGTTTCATTCGCCCTC
AGCCCGGTCGTCCCCTCACATTATGTGGACCTGGTAAATATTCAACGTCG
TCTCCGATCCCCTGACGTGGTCGGCACAGGCCCGGCACCACGTTCACCCT
GGGTACCACCACCGCAGCGGAGAGGAGAAGGTACTTTGTTTACTGTCAAT
GTTAATACCACGTAGTATGAAAATACACAAAAATGTGTCAAAATATGTGT
GTGTATGAGTGGCGAGGGGACTGGTCTTGCATAGCTGGCGCTTATGAGTA
TGTCGTTTGATCGTCATTTTCCTTGAGCGCTTTCTCTTTCTGCGTTCAAC
GGGCTCCAGATAAAATGACAATAAAAATGTCTCATGCCCTAGAGTCTATA
TGGATAGGTGGTGTTCTACCGTGTGGCATTGAAACCGTACTACACGCCTC
CGATACATTGAAACTCCACACTCGGTATCGGTAATCATGTCCACTGTACC
AAGAGTTGTAGAAAAGAGAGGCACAAAAATTGGTCCATGATGATACCTGA
AAAGGCAACACCCGTTACTGGAACTATCTTGAGGACTATACTGGCCCTGT
GCCGGCGGACTCTCGGCGATGAACACCATTGGTACGCAATTGCGTGACCC
GATAAACGCGGGACTGGCGCGACGGCGTATGGCGGTATGAATAAATGGAC
ACCGTCGTGGAAAGCGGGAGGATTCCCGCGAGTAAGCACCAGATTTAGCC
TGAGAGTGGAATTACCAGGTTGACGCAGGACAGGACTACCGAACTCGTCT
CGCGAGACCAAATTCTCAGGCGCGAACGGGGACAGGGAAATTTCACTTTC
CCTGTTCAGCTGACCACGAGCAGCAGGATTGGCAACCTGATCCGGTTGAT
ATATATTCTGCTATAAGTGAGGACCATACATACACATGTATGGTTACACA
TATAGCAAGAGTATGGATCAACCGGGTAAGGTTGCCAATCCTGCTCGTGG
TCAGCTGAACAGGGAAATATGAATATTTCCCTGTTCCCGTTCGCGCCTGA
AAATTTGGTCTCGCGAGACGGGTTCGGCAGTCCCATCCCGCGTCTTTCTG
CTAATCTTCATACTCAGGCTGAATCTGATGCTTACTTATGGGATTACTCC
TGAGTTCCGCGGCGGCGTCCATTTATCTATTTAAAACCGCCATACACCAT
CGGGTCAGTCCCGAGTTTATCGGGTTAAGCAATTGCGTACCGATGGCGTT
CACTGCCGAGAGTCCGCCGGCACAGGGCCAGTAAACCTCAAGGTAGTTCC
AAACGAGTGCTGCCTTGGTAGGTCACCATGTACCAATTAATATGCGCCTC
TCTTTCCCACACCCACTATTGGTATGAAGTGGGCATGTTGAAAGTACCGG
CAATATATACCTTAACGAATATTTTCAAGGTACGCTTGCCCGTCTGAAAT
GATACATCAATGTCGTCACGGGGATTGTGAGGTACAAAAACGAAAGTAAC
TTTTGTTGTACCCTAGTCTCTCTTCACATGTTCACAGTCAAAATCGCTGG
TTCAGAAGGTACCAGATACAAATGTGCCGTAGAAAGAAATATTATCAAGA
TATGCCTTCTCAGAAAGACCGAGGATGTGCCCCTCCATTCCCCAACATCT
GATATGGTCAGGAAGTGCATCTTTTGAGGAAAAACAACGGTTGGTTCATT
GTGCCCCCTTGTAGATACTTTGATGTGATCGTCTTGATACCCCTCTCTCT
TGTTGCTTGTCTCTCCGTTGGCGTTGGCCGAAATAGGTTAAGGGCGGCTG
GAGACACCAAGACAGGCAGTGGCATGGGCACTTGCAGCTAAAACAACTCG
GGACGAGGTTCAGCCTAGGGCGCTCCAAGGCTAGAGAGCGGAAGCTAATG
ATCGACAAGTACGCGAGGAAGTGAGTGGCCGCTTGTCACTCCCGAGGAGG
CGTTATGGAGGGGTCCATGGATCGATGCCATCCCCTCAATTCACGAACAA
CTAGTACGGCACGCTAAAATGATATGATGATATTACACTAATTATCACAA
GAGTCTTGTACTGTTTGTGTGCGTTTTTTGATGGTTTGTTTCCTTTTTTT
GGTATCGAATTATGTAACCGTTCGACGATCCGCAGCAATGAAAATTCCAA
CTTGTTTACTGTAGTCAATTTAAGTCAAGTAACTTGGATCGCCCTGGGTC
TGAAAATGAGCTATCAATCGGTTCTGCTTGAGACGTTCTTACACACACAA
CTCGGGCACAACTTTCCGTCTCCCCTGGCTGTTAAGGATGGATCGTGAAC
TAAAAATGTAATCGATATCTTTATCTGTCTCTCATTTGTCTGTTATTTGG
ATGTGTTATTCGCCTGTTATTCGTCTGTTATTTTTCTGTTAGTTGGTGAC
ATTCCGTCGCAAAAGGTAGGCGCGCCCGTTTCACGCCTGACACGTACCTA
GAACAGTTTCCCCCCAACCCGTCTGTACCGGGTACCGTACCCTCCAGGGA
AATCCATAAGGTGGAGTTTACGGACTCCAATGCGGGAGGGGTTTGGATGG
CCCTTGGGTTCGTGTCTTTGGTCTTCTGCTTGGTCGTGGGAAACTTCCAG
CCCTAGGGTAAGATATCAGTTTTGGTATCATTTTCAGAGACTGTAGAGGA
GATGGGTCACGTTTCTATGTACAGTGCCTGGTGTAGGAGTGGGAAACCGG
GTCCTTTGCTCGTACAAGAATTTAAACGTGTTTTTTTCGAAGCCCTCTCT
TTCAGAGAGGATGGCAAGAGACGGTAACACTTGCAGGGATGCTTGTGGCG
GAAGCCAGACCGTGTGTACGAATGTATTGTCGACACCGGCATCGTTTCTC
GTCTCCATAATGATGAAAATGTACTCTCGACGGCACATTAGATACAGTAC
AGTGTGTGATCAGTTATGAAACGACCTCTTCCTGTCTTGTTGCATGTGTG
TCTGCTCTTTCATGCTCTGTTATGTTTATTTGTCCTTGTAATCTGTATCG
CTGTGACGCAGAGACAAGACCAAGAGGTTGCCGTGATCCAGACCTTCAAA
AAAAAAAAGAAAAAGAAAATACTGCGAATTGCGGCGCCATGCAGTAATCG
CCGGGAAAAGCACGAACAGGCTGCTTGGCTGCTCCACTGAAAGAGGCTGT
TACTGTTATCTTTCTTGTTTCTTAGGTCGGTGTGGATGACAAAGTACTGA
TGGAGAGGCCAAGTGTCGTGTGCGGGTGCGTATGGGACGTCCTGCATATT
CTGCGCGAAGTACTACACACACCTGCGGCGTCAGCGGTGGCGACAAGATT
TTCATTTCAATGCTTTTTCAGCGAGTGGAACTTTTCTGGCCTGTTTCAGT
AATGCCTAAAGCCGAGAGAGTAATTACGTATCAGTACCATACCATCCTGC
TGCAGGCGACGGGTGTGTAGGAAACACGCCCTCTAGATAGAACTCCCCCC
CCCCCCCCTCGATCCTCCTGATATCACCAAAGTCATAGTCATGTATAGAG
CCGCAAGTCTTCAAGGGAAAATACTAAAATAACAATTGTACATACAGTGG
GCAAGTCTTCTAAAACCCACGAACCCACAACGTTTGCTTTCACCGTTCGC
GTTGTCATGGAAGACGCGACAAGGAGTCGATAATCAACCATGCCTTTGGG
GGAGGGGGGGAGGAGGCATCATTACAGTTTTATTTGTAGTCACGCACGGC
ATGTCGATCTATAGAGTTGCAGAGTTCTTCCCATATTTTGCATGATGGTG
TGAATCACTTTGGCGGTCTCGGCGTCGGTCTACATTATGTTACTGTGTGG
CAATGCTCAAGACCTAGTGGTAAAAGCCCAAGCACCCAAGACTCTACCCT
ATTCTTCGTTACATTCAGTCGTTTTTCGCCGGCTGCTTTATTTTTTGCGC
TTCTAAAGGTTGAGAAGTATTGTTTGTGAGTGTGGCGTCAGTATGTGCGT
GTCTTTGTCGAAAGGTGCCGGTGTTGTGTTTTATTATTTTTGTTGGGTGT
ACCCGTGTACACAGTACCCGGATGCTTTCCCACGAGTCCATCCAATACGA
AGACCAGTAGCAGCAGCAACAGTAAGTATTAGTATTAATAGTAAGTGCGT
GTGACGGTGTTGTATTCCTGTGCTTGCATGGTATCCAGCCACTCCAAAAA
TACAAGCAATACAGTAGTTCATACTGCATTTAGTGCCGTCAAGTAAAAGT
GCAACCACGTCGATGATGAGGTAGGTGATGAGGCATCATAATCCAGGTGA
TACAAGACCTGACGTCCCCTGTAGATTTTCCCCGCAGCAAGAGCTAGATA
TAAAGTAGGCAATTCGGGACAAGCTTTCGGGAAGAAGACCTTTGTATCTA
TAAAAATAAGTACTTCTTGTCGTATAATACATGTTTTTCTTATCTTGGCG
GTTCTTATGGGAACAAAATCTTGTACAAAAATGTTAAAATTTTCCACAAG
ATTTTCGTGCGAAAATCTTGCCTTTGAAGATTTCGTAACGCTTGTTATGG
GGAAAAAATCTTGTTGATGGGGAAATATTTTGTTTGGGCATGATTTCGAC
AAACTTGTATATGCTTTTCTATGCGGGGGAGGTACAAAATTCAAATTGCC
GAAGGCTGGAAATGGGGACGTATTTTTTCTGAACGAGAGGGTGAAGTTGG
CAAGAGCAGACAAAGCTTTAGCTCTACAGTACCACTGAAGCATAGACACC
AACGTATGTGGATGTTTCACCCCAGTCATTATCGGTAGATGAATACAAAC
ACAGCCCGGCAAGAATGCGCTACTAACAATTTTTGTACACTACC
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Coding sequence (CDS) from alignment at F-serratus_M_contig873:295220..300813+

>mRNA_F-serratus_M_contig873.20104.1 ID=mRNA_F-serratus_M_contig873.20104.1|Name=mRNA_F-serratus_M_contig873.20104.1|organism=Fucus serratus male|type=CDS|length=1428bp|location=Sequence derived from alignment at F-serratus_M_contig873:295220..300813+ (Fucus serratus male)
ATGTGTAAAATATTCCATGTACTACTAATAGTATTGCACCCGTACATGTT
CTGCCTATCTGCATCTTTTTTATTCTGTGCCGTGGCAAACTGTTTTTGTC
TGCGAAGATCTCTCTGTCCTAATATTACACACGCACTTTCTATTATATAT
CTACGCAATTTATCTTACTTTATACTTATTATCGACACAGCACGCAGCAC
CCTCTTCCCTCAGAAAAGTAGTATTGTTAATAGTGAGAGGAAGGCTTTGA
CTTTTGAAGCTGTGGAATCTTCTTTTTTTGTTAGGGTGTTGGCTTTCACC
GTCGCCTGTAACGATCAACCATCAACCATCAACCTTGAACCGGTGCAGGC
TCCTCCGGCCAAGACCGTGCTCCACCATAAGGGCTTCCACCACACCGACA
CGGGCGACGTCCCCGAAGAGATGTGTAAAATATTCCATGTACTACTAATA
GTATTGCACCCGTACATGTTCTGCCTATCTGCATCTTTTTTATTCTGTGC
CGTGGCAAACTGTTTTTGTCTGCGAAGATCTCTCTGTCCTAATATTACAC
ACGCACTTTCTATTATATATCTACGCAATTTATCTTACTTTATACTTATT
ATCGACACAGCACGCAGCACCCTCTTCCCTCAGAAAAGTAGTATTGTTAA
TAGTGAGAGGAAGGCTTTGACTTTTGAAGCTGTGGAATCTTCTTTTTTTG
TTAGGGTGTTGGCTTTCACCGTCGCCTGTAACGATCAACCATCAACCATC
AACCTTGAACCGGTGCAGGCTCCTCCGGCCAAGACCGTGCTCCACCATAA
GGGCTTCCACCACACCGACACGGGCGACGTCCCCGAAGAGGCCCGGCACC
ACGTTCACCCTGGGTACCACCACCGCAGCGGAGAGGAGAAGGCCCGGCAC
CACGTTCACCCTGGGTACCACCACCGCAGCGGAGAGGAGAAGGTTAAGGG
CGGCTGGAGACACCAAGACAGGCAGTGGCATGGGCACTTGCAGCTAAAAC
AACTCGGGACGAGGTTCAGCCTAGGGCGCTCCAAGGCTAGAGAGCGGAAG
CTAATGATCGACAAGTACGCGAGGAAGTTAAGGGCGGCTGGAGACACCAA
GACAGGCAGTGGCATGGGCACTTGCAGCTAAAACAACTCGGGACGAGGTT
CAGCCTAGGGCGCTCCAAGGCTAGAGAGCGGAAGCTAATGATCGACAAGT
ACGCGAGGAAGGAAATCCATAAGGTGGAGTTTACGGACTCCAATGCGGGA
GGGGTTTGGATGGCCCTTGGGTTCGTGTCTTTGGTCTTCTGCTTGGTCGT
GGGAAACTTCCAGCCCTAGGGAAATCCATAAGGTGGAGTTTACGGACTCC
AATGCGGGAGGGGTTTGGATGGCCCTTGGGTTCGTGTCTTTGGTCTTCTG
CTTGGTCGTGGGAAACTTCCAGCCCTAG
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