mRNA_F-serratus_M_contig872.20095.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig872.20095.1
Unique NamemRNA_F-serratus_M_contig872.20095.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig872.20095.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig872contigF-serratus_M_contig872:223217..224165 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size951
Cds size948
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932550.108906-CDS-F-serratus_M_contig872:223217..2241651622932550.108906-CDS-F-serratus_M_contig872:223217..224165Fucus serratus maleCDSF-serratus_M_contig872 223218..224165 -
1690964361.1170309-CDS-F-serratus_M_contig872:223217..2241651690964361.1170309-CDS-F-serratus_M_contig872:223217..224165Fucus serratus maleCDSF-serratus_M_contig872 223218..224165 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig872.20095.1prot_F-serratus_M_contig872.20095.1Fucus serratus malepolypeptideF-serratus_M_contig872 223218..224165 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig872.20095.1

>prot_F-serratus_M_contig872.20095.1 ID=prot_F-serratus_M_contig872.20095.1|Name=mRNA_F-serratus_M_contig872.20095.1|organism=Fucus serratus male|type=polypeptide|length=316bp
TGALDEATTSVRGTPGDGSPRERSEGFSGPSLSPIAAAASRRGVNGVSGW
GKTGDRSAPGSVNNRRVAFTRASANDTVGPSDADGSSSPNAAGGAEDEDR
DGFPIEGRQRRAPVSVKDGSAKFSSRSNSSGGSFVGGDDGDENNTDAPMR
SPSSLERSAPQALSALAHASNQGEHGDESGRLSSVRKHVGAVSGKSGGTP
RSGRTGETGVGVGSKTSSPAIRSPPYGRGASGGSRSWVGRADEPAVQDES
GGGKRGPGSVKDRLAAYSQRGSGMSAAGGGGGRISPSGSRSPGSVGSADA
MGSATAAVGDTQDSAN
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mRNA from alignment at F-serratus_M_contig872:223217..224165-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig872.20095.1 ID=mRNA_F-serratus_M_contig872.20095.1|Name=mRNA_F-serratus_M_contig872.20095.1|organism=Fucus serratus male|type=mRNA|length=949bp|location=Sequence derived from alignment at F-serratus_M_contig872:223217..224165- (Fucus serratus male)
ACGGGGGCGCTCGATGAAGCGACCACATCCGTCCGTGGCACTCCCGGTGA
CGGCTCTCCACGAGAACGGAGCGAGGGATTCAGCGGACCCTCGCTGTCAC
CGATCGCCGCCGCTGCCTCTCGGCGAGGCGTCAACGGCGTGTCCGGGTGG
GGTAAAACCGGCGATCGGAGTGCGCCGGGGTCTGTCAATAACCGCCGTGT
AGCTTTCACCCGCGCTTCTGCTAACGATACAGTTGGTCCATCTGACGCTG
ACGGCTCCTCATCGCCTAACGCCGCGGGGGGGGCTGAAGATGAGGATCGT
GACGGATTCCCCATCGAGGGAAGGCAGCGCCGGGCGCCGGTGTCGGTCAA
GGACGGTTCCGCCAAGTTTTCCAGCAGGAGCAATAGTAGCGGTGGGAGTT
TCGTCGGAGGTGACGATGGCGATGAGAACAATACCGATGCACCAATGAGA
AGTCCCTCTTCTCTTGAACGAAGCGCTCCGCAAGCGCTGTCAGCGTTGGC
GCATGCATCCAACCAAGGCGAACATGGCGATGAGTCCGGGCGTTTGTCCT
CTGTTAGGAAGCACGTGGGAGCGGTGTCAGGCAAGAGCGGAGGGACCCCG
AGGAGCGGCCGCACCGGAGAGACTGGCGTCGGCGTTGGGAGCAAGACAAG
CTCGCCGGCAATCCGCTCCCCCCCCTACGGCCGTGGTGCCAGTGGCGGGT
CTCGGTCATGGGTAGGGAGAGCTGATGAACCTGCCGTCCAGGACGAGAGT
GGTGGCGGCAAGCGCGGGCCGGGATCCGTCAAAGACCGTCTTGCGGCGTA
TTCTCAACGTGGGAGCGGAATGTCTGCTGCTGGCGGTGGTGGTGGTAGAA
TCAGCCCCTCGGGAAGTCGCTCTCCCGGGTCCGTTGGTAGCGCAGACGCG
ATGGGAAGCGCTACAGCGGCAGTTGGGGATACGCAAGACAGTGCTAACG
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Coding sequence (CDS) from alignment at F-serratus_M_contig872:223217..224165-

>mRNA_F-serratus_M_contig872.20095.1 ID=mRNA_F-serratus_M_contig872.20095.1|Name=mRNA_F-serratus_M_contig872.20095.1|organism=Fucus serratus male|type=CDS|length=1896bp|location=Sequence derived from alignment at F-serratus_M_contig872:223217..224165- (Fucus serratus male)
ACGGGGGCGCTCGATGAAGCGACCACATCCGTCCGTGGCACTCCCGGTGA
CGGCTCTCCACGAGAACGGAGCGAGGGATTCAGCGGACCCTCGCTGTCAC
CGATCGCCGCCGCTGCCTCTCGGCGAGGCGTCAACGGCGTGTCCGGGTGG
GGTAAAACCGGCGATCGGAGTGCGCCGGGGTCTGTCAATAACCGCCGTGT
AGCTTTCACCCGCGCTTCTGCTAACGATACAGTTGGTCCATCTGACGCTG
ACGGCTCCTCATCGCCTAACGCCGCGGGGGGGGCTGAAGATGAGGATCGT
GACGGATTCCCCATCGAGGGAAGGCAGCGCCGGGCGCCGGTGTCGGTCAA
GGACGGTTCCGCCAAGTTTTCCAGCAGGAGCAATAGTAGCGGTGGGAGTT
TCGTCGGAGGTGACGATGGCGATGAGAACAATACCGATGCACCAATGAGA
AGTCCCTCTTCTCTTGAACGAAGCGCTCCGCAAGCGCTGTCAGCGTTGGC
GCATGCATCCAACCAAGGCGAACATGGCGATGAGTCCGGGCGTTTGTCCT
CTGTTAGGAAGCACGTGGGAGCGGTGTCAGGCAAGAGCGGAGGGACCCCG
AGGAGCGGCCGCACCGGAGAGACTGGCGTCGGCGTTGGGAGCAAGACAAG
CTCGCCGGCAATCCGCTCCCCCCCCTACGGCCGTGGTGCCAGTGGCGGGT
CTCGGTCATGGGTAGGGAGAGCTGATGAACCTGCCGTCCAGGACGAGAGT
GGTGGCGGCAAGCGCGGGCCGGGATCCGTCAAAGACCGTCTTGCGGCGTA
TTCTCAACGTGGGAGCGGAATGTCTGCTGCTGGCGGTGGTGGTGGTAGAA
TCAGCCCCTCGGGAAGTCGCTCTCCCGGGTCCGTTGGTAGCGCAGACGCG
ATGGGAAGCGCTACAGCGGCAGTTGGGGATACGCAAGACAGTGCTAACAC
GGGGGCGCTCGATGAAGCGACCACATCCGTCCGTGGCACTCCCGGTGACG
GCTCTCCACGAGAACGGAGCGAGGGATTCAGCGGACCCTCGCTGTCACCG
ATCGCCGCCGCTGCCTCTCGGCGAGGCGTCAACGGCGTGTCCGGGTGGGG
TAAAACCGGCGATCGGAGTGCGCCGGGGTCTGTCAATAACCGCCGTGTAG
CTTTCACCCGCGCTTCTGCTAACGATACAGTTGGTCCATCTGACGCTGAC
GGCTCCTCATCGCCTAACGCCGCGGGGGGGGCTGAAGATGAGGATCGTGA
CGGATTCCCCATCGAGGGAAGGCAGCGCCGGGCGCCGGTGTCGGTCAAGG
ACGGTTCCGCCAAGTTTTCCAGCAGGAGCAATAGTAGCGGTGGGAGTTTC
GTCGGAGGTGACGATGGCGATGAGAACAATACCGATGCACCAATGAGAAG
TCCCTCTTCTCTTGAACGAAGCGCTCCGCAAGCGCTGTCAGCGTTGGCGC
ATGCATCCAACCAAGGCGAACATGGCGATGAGTCCGGGCGTTTGTCCTCT
GTTAGGAAGCACGTGGGAGCGGTGTCAGGCAAGAGCGGAGGGACCCCGAG
GAGCGGCCGCACCGGAGAGACTGGCGTCGGCGTTGGGAGCAAGACAAGCT
CGCCGGCAATCCGCTCCCCCCCCTACGGCCGTGGTGCCAGTGGCGGGTCT
CGGTCATGGGTAGGGAGAGCTGATGAACCTGCCGTCCAGGACGAGAGTGG
TGGCGGCAAGCGCGGGCCGGGATCCGTCAAAGACCGTCTTGCGGCGTATT
CTCAACGTGGGAGCGGAATGTCTGCTGCTGGCGGTGGTGGTGGTAGAATC
AGCCCCTCGGGAAGTCGCTCTCCCGGGTCCGTTGGTAGCGCAGACGCGAT
GGGAAGCGCTACAGCGGCAGTTGGGGATACGCAAGACAGTGCTAAC
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