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Homology
BLAST of mRNA_F-serratus_M_contig872.20090.1 vs. uniprot
Match: D7FJW3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJW3_ECTSI) HSP 1 Score: 235 bits (599), Expect = 2.410e-66 Identity = 165/445 (37.08%), Postives = 224/445 (50.34%), Query Frame = 2
Query: 182 ASPERCALVFGLFQSVEAVNTLGSIYKAQLLPELQILRLSVGDTVFEQWDYHSMVYVIVRGTVELKSTKAGVPFRVGKFGVGEVIGSPLAEKCQTTARCTDDSILIGLDGEHLKAIATSSRDAERMAKEAFLKDVAAMSLFSDSDLNVVGKLFKTCTLKENEVLCQEGTRANHLYVVKRGFFRLLKAFLPKASSTGDGIKDRASSEGPYSCGGR----------RLMHFELGEIGPKEMLGESGLFHNEAEASSGAVGTTARAKVPMSAATGEYEAGPLYPPSSASEVENNAEGRIYTPATPKSARVMQAASATRNMNVLSATNTPSPTRPKAGVK-----GDADPTAIFCSPSRPRQRK-------KGYHIVSAVASRGGAQVYVASIFDLKLLLRDLPNLRCFIDITRRVHEARAKCWDAQALAEQLREQIAWEGYKRKVISE 1450
ASPE A+VF +F SV V +L SIYK QL E Q+ + G T+F QW++ + VI+RG V L S +GV F+ G VGEVIGS TARC + ++ L + A+ S AER+AK+AFLK A S +D DLN V LF T TL +N+V+C+EG+R +H+YVVKRGF R+LKAFLP+ RL HF+LGEIGPK+MLGE+G+ + +S A TT PP +A+E + PA S Q ++ T TP T GDA P + + R + K +I+SA AS G A+VYVA+++DLK L D + R +R+H+ARA+ W +ALA+QLR Q W+ KR V+S+
Sbjct: 91 ASPEEVAIVFDMFNSVPEVTSLDSIYKKQLFREFQLRHFAAGSTIFRQWEHQDKICVILRGRVHLTSKHSGVLFQAGTCNVGEVIGSIEPIVGMLTARCEAYTTVLCLGSDSFAAVVNDSVCAERVAKKAFLKCSAVFSTLNDDDLNTVETLFTTVTLHDNQVICKEGSRVDHVYVVKRGFLRILKAFLPEEXXXXXXXXXXXXXXXXXXXXXXXXXXSADVETRLKHFDLGEIGPKDMLGENGMLKHLDTSS--AFSTT--------------------PPPAATET-------VALPAIASSQEDAQ--------HLSQPTETPGDTTDHGASTPDWDTGDASPPSADAATDRAGSSRVATIGPRKPAYIISAAASGGTAEVYVANVYDLKKLQTD--SFRYCWKTAQRLHQARAQAWGVEALAQQLRRQNEWDARKRGVLSQ 496
BLAST of mRNA_F-serratus_M_contig872.20090.1 vs. uniprot
Match: A0A6H5KSV6_9PHAE (Cyclic nucleotide-binding domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSV6_9PHAE) HSP 1 Score: 195 bits (495), Expect = 8.140e-52 Identity = 158/457 (34.57%), Postives = 225/457 (49.23%), Query Frame = 2
Query: 110 MVQNGGTEASFERPDQGAKGTRDFASPERCALVFGLFQSVEAVNTLGSIYKAQLLPELQILRLSVGDTVFEQWDYHSMVYVIVRGTVELKSTKAGVPFRVGKFGVGEVIGSPLAEKCQTTARCTDDSILIGLDGEHLKAIATSSRDAERMAKEAFLKDVAAMSLFSDSDLNVVGKLFKTCTLKENEVLCQEGTRANHLYVVKRGFFRLLKAFLPKASST-GDGIKDRASSEGPYSCGGRR---------LMHFELGEIGPKEMLGESGLFHNEAEASSGAVGTTARAKVPMSAATGEYEAGPLYPPSSASEVENNAEGRIYTPATPKSARVMQAASATRNMNVLSATNTPSPTRPKAGVKGDADPTAIFCSPSRPRQRKKGYHIVSAVASRGGAQVYVASIFDLKLLLRDLPNLRCFIDITRRVHEARAKCWDAQALAEQLREQIAWEGYKRKVISE 1450
+VQ EA + P + T ASPE A+VF +F SV V +L SIYK QL EL++ + G T+F QW++ + +VIGS TARC + ++ L + A+ S AER+AK+AFLK A S +D DLN V LF TL +N+V+C EG+R +H+YVVKRGF R+LKAFLP+ + G AS+ + RR L +F+LGEIGPK+MLGE+G+ + +S + TT P AAT P+ AS E + + + T A + ++T + + A SP A G P +P +I+SA AS G A+VYVA+++DLK L D C+ +R+H+ARA+ W A ALA+QLR + WE K +V+S+
Sbjct: 61 IVQRHIREADPDTPGSSSDETT-MASPEEVAIVFDMFNSVPEVTSLDSIYKKQLFRELRLKHFATGSTIFRQWEHQN-----------------------------KVIGSIKPIVGMLTARCETYTTVLCLGSDRFAAVVNDSVCAERVAKKAFLKCSAVFSTLNDDDLNTVETLFTAITLHDNQVICMEGSRVDHVYVVKRGFLRILKAFLPEEDADCRSGPPSHASTVAAGAASARRSSLADVETRLKYFDLGEIGPKDMLGENGMLKHLD--TSLVLSTT-----PAPAATESVTL-----PAIASSQE---DAQHLSQPTDARADTIDHGASTLDGDAGDA----SPPSADAATDGAGSPRVATMGLRKPA------YIISAAASGGTAEVYVANVYDLKKLQTD-SFCYCW-KTAQRLHQARAQAWGAGALAQQLRRRNEWEARKGEVLSQ 460
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | Cyclic nucleotide-binding domain |
| Ec32 ortholog | Ec-10_000700.1 |
| Exons | 4 |
| Model size | 1925 |
| Cds size | 1440 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622932550.8913372-UTR-F-serratus_M_contig872:87722..87831 | 1622932550.8913372-UTR-F-serratus_M_contig872:87722..87831 | Fucus serratus male | UTR | F-serratus_M_contig872 87723..87831 + |
| 1690964361.3542502-UTR-F-serratus_M_contig872:87722..87831 | 1690964361.3542502-UTR-F-serratus_M_contig872:87722..87831 | Fucus serratus male | UTR | F-serratus_M_contig872 87723..87831 + |
| 1622932550.9676616-UTR-F-serratus_M_contig872:90180..90556 | 1622932550.9676616-UTR-F-serratus_M_contig872:90180..90556 | Fucus serratus male | UTR | F-serratus_M_contig872 90181..90556 + |
| 1690964361.416406-UTR-F-serratus_M_contig872:90180..90556 | 1690964361.416406-UTR-F-serratus_M_contig872:90180..90556 | Fucus serratus male | UTR | F-serratus_M_contig872 90181..90556 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622932550.906379-CDS-F-serratus_M_contig872:87831..88065 | 1622932550.906379-CDS-F-serratus_M_contig872:87831..88065 | Fucus serratus male | CDS | F-serratus_M_contig872 87832..88065 + |
| 1690964361.3713782-CDS-F-serratus_M_contig872:87831..88065 | 1690964361.3713782-CDS-F-serratus_M_contig872:87831..88065 | Fucus serratus male | CDS | F-serratus_M_contig872 87832..88065 + |
| 1622932550.9215772-CDS-F-serratus_M_contig872:88572..88659 | 1622932550.9215772-CDS-F-serratus_M_contig872:88572..88659 | Fucus serratus male | CDS | F-serratus_M_contig872 88573..88659 + |
| 1690964361.38121-CDS-F-serratus_M_contig872:88572..88659 | 1690964361.38121-CDS-F-serratus_M_contig872:88572..88659 | Fucus serratus male | CDS | F-serratus_M_contig872 88573..88659 + |
| 1622932550.9348586-CDS-F-serratus_M_contig872:88871..89009 | 1622932550.9348586-CDS-F-serratus_M_contig872:88871..89009 | Fucus serratus male | CDS | F-serratus_M_contig872 88872..89009 + |
| 1690964361.3925688-CDS-F-serratus_M_contig872:88871..89009 | 1690964361.3925688-CDS-F-serratus_M_contig872:88871..89009 | Fucus serratus male | CDS | F-serratus_M_contig872 88872..89009 + |
| 1622932550.948693-CDS-F-serratus_M_contig872:89199..90180 | 1622932550.948693-CDS-F-serratus_M_contig872:89199..90180 | Fucus serratus male | CDS | F-serratus_M_contig872 89200..90180 + |
| 1690964361.4022405-CDS-F-serratus_M_contig872:89199..90180 | 1690964361.4022405-CDS-F-serratus_M_contig872:89199..90180 | Fucus serratus male | CDS | F-serratus_M_contig872 89200..90180 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig872.20090.1 >prot_F-serratus_M_contig872.20090.1 ID=prot_F-serratus_M_contig872.20090.1|Name=mRNA_F-serratus_M_contig872.20090.1|organism=Fucus serratus male|type=polypeptide|length=480bp
MVQNGGTEASFERPDQGAKGTRDFASPERCALVFGLFQSVEAVNTLGSIY KAQLLPELQILRLSVGDTVFEQWDYHSMVYVIVRGTVELKSTKAGVPFRV GKFGVGEVIGSPLAEKCQTTARCTDDSILIGLDGEHLKAIATSSRDAERM AKEAFLKDVAAMSLFSDSDLNVVGKLFKTCTLKENEVLCQEGTRANHLYV VKRGFFRLLKAFLPKASSTGDGIKDRASSEGPYSCGGRRLMHFELGEIGP KEMLGESGLFHNEAEASSGAVGTTARAKVPMSAATGEYEAGPLYPPSSAS EVENNAEGRIYTPATPKSARVMQAASATRNMNVLSATNTPSPTRPKAGVK GDADPTAIFCSPSRPRQRKKGYHIVSAVASRGGAQVYVASIFDLKLLLRD LPNLRCFIDITRRVHEARAKCWDAQALAEQLREQIAWEGYKRKVISETVR LDRLKHIMGSSGIGCSVHRWGGSGDDIDS* back to topmRNA from alignment at F-serratus_M_contig872:87723..90556+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_F-serratus_M_contig872.20090.1 ID=mRNA_F-serratus_M_contig872.20090.1|Name=mRNA_F-serratus_M_contig872.20090.1|organism=Fucus serratus male|type=mRNA|length=2834bp|location=Sequence derived from alignment at F-serratus_M_contig872:87723..90556+ (Fucus serratus male) AAAGGCTGACATCGACGGTGATAAGGATACCGTGACCAAGCATTGCCTCA
CGGCGTTGCATATTGTAGAGCAGTGCAAGCACGCCGCAGCCGAGCGGCGT
CTCGCTGCGATGGTCCAGAACGGTGGCACGGAGGCCTCATTTGAGCGCCC
CGACCAGGGTGCGAAAGGCACCAGAGATTTTGCGAGTCCCGAGCGTTGCG
CTCTGGTGTTTGGATTGTTTCAATCAGTTGAAGCTGTAAACACACTCGGC
TCCATCTACAAGGCCCAGCTATTGCCCGAGCTACAAATTTTGCGGCTCTC
TGTGGGGGACACGGTGTTCGAGCAATGGGATTATCATAGCATGGTCAGTG
TGAGACATCAACTCTAGCTGTGAGTAGGCTTGTGAATTATTTTATTCACC
AGGATCTCGAACCCGTCGCCCATATGCGCATGTACATGACTATGGTTGCT
GCCATCAACGCGAGTTGAGATCCTTGCGCCAGTCATACCGATGCTCCAAA
AGGCTTATCTCCGCTGGCGAACAGCAACGACAAGCAAGCTTATCGTCTTC
AATTACAACAACGCGAAACCTTGCCGTCCGAAGAAGCATTTTCGCTTGTT
GCGAGATTCACGGTGTGCTATGACGTAACATCCTCGCGATAGCTCCTCGG
TTTTAGGGATTTGGACACTGGTGCGGACCCGCCGCGAATGTAAACTATAC
GTCCCTGCTCTTGCGTGCGTGCGCGCTCGTAGAGCCGTCGTTCTAATATG
AATTTTCAGATGGTCGTTCGCCGTCGATCCCGTGGAGTAAGACGTTTGCG
TTGGTTCGACGGACAGAGCATCGCTACTCGACAATTTGGACGCTTGGTAG
GTCTACGTCATTGTCAGGGGGACCGTAGAGCTGAAGTCGACGAAGGCTGG
TGTTCCGTTTCGAGTCGGCAAATTCGGCGTCGGAGAGGTGAAAAAGTCGT
GCGCGCGCTACGTGCGGCTGTGGCGGTCCCCCTCTGGCTAGACGCGAGGA
GCATTTTGCTCCGTACTTAAGTTGTGCGAGACAGCTCTTGTCTGGTAGTC
GGTCCATTTCAGCATTAACAGTTGTTGTGCAGCAGCGCGATTACTCTGTT
GTCTTCACTAACCATACCAAGCTCGTGCCGGACACCTTGACACAACAAGG
TGATTGGCTCCCCGTTGGCGGAGAAATGCCAGACGACGGCGAGATGTACT
GACGATAGCATCCTCATCGGTTTGGATGGGGAACATCTTAAGGCGATCGC
TACAAGCTCGAGAGACGCGGAACGCATGGCGAAGGAGGTAGGCTGATATG
ATACATTAAGGGAGGATTGGATCGGCGAGGGAAAGCTACACATCAAACAA
GTGCAGTTTTTTTACTGTAGATTGTTCTCTATCTGCCACTTCCACCAACG
TGTTGTTACTTCAGAAAATATCGGCATTTGCATCGCACATCTTTCCCATA
GCTACAACCGTGGAAACCCATTACCAGGCGTTCCTCAAGGATGTCGCGGC
GATGTCTTTGTTCAGTGATAGCGACCTCAACGTCGTCGGCAAGCTGTTCA
AGACTTGTACGCTGAAGGAGAACGAGGTGCTCTGCCAAGAAGGGACGCGT
GCCAACCACTTGTACGTGGTAAAGCGCGGGTTTTTCCGTCTTCTGAAGGC
ATTTTTGCCCAAGGCTTCTTCTACTGGTGACGGTATCAAGGACAGGGCAT
CGAGTGAAGGCCCGTATTCCTGTGGTGGGAGACGCCTGATGCACTTTGAG
CTTGGGGAGATTGGTCCAAAAGAGATGCTTGGAGAAAGCGGTCTGTTTCA
TAATGAGGCGGAAGCTTCCTCAGGGGCGGTGGGCACTACGGCCAGGGCTA
AGGTCCCAATGTCAGCGGCGACTGGTGAATACGAGGCGGGTCCGCTCTAC
CCCCCTTCCTCTGCATCAGAAGTCGAAAACAACGCAGAAGGAAGAATATA
TACGCCGGCGACACCCAAATCAGCACGTGTAATGCAAGCGGCGTCAGCCA
CGAGAAACATGAATGTTTTGTCGGCCACCAACACGCCATCGCCGACTCGC
CCGAAGGCAGGCGTAAAAGGTGACGCCGATCCCACTGCAATCTTTTGTTC
TCCTTCGAGACCACGACAACGGAAGAAGGGCTACCACATTGTGTCTGCGG
TGGCCTCGAGGGGCGGCGCTCAGGTGTACGTCGCCAGCATTTTTGACCTC
AAGCTGTTGCTGAGAGATTTGCCCAATTTGCGATGCTTCATAGACATCAC
CCGTCGGGTTCACGAGGCGCGGGCGAAGTGCTGGGACGCCCAAGCCCTGG
CGGAACAGCTGCGAGAACAGATAGCATGGGAAGGGTACAAACGGAAAGTC
ATTTCGGAGACCGTGAGACTAGATCGCCTCAAACACATTATGGGGTCTAG
CGGTATCGGCTGCAGTGTACATAGGTGGGGAGGGAGTGGAGATGATATCG
ACTCTTGAGTGTGTTGAGGATCATATATATATATATCGTTGTAAATATTT
TCTGATGTCGATGATTTTCCCTCAGGAACTAGTAACACATAAAACAAATT
TGATTCGGTGAGACGTGAGTATCTCCTAGTTTGTCCACCAGTAGTAGTAG
CTCTTCTGTGGTCTCACATGCTTGAGTCACCGGTTATTCTTCTCGTCCTC
GTTTTCTTGATCTGACTAAAGCTACATCATCAGTGTTCTGTTTACTAACT
ACACTTCAGTGCCTTCGTTTCATTATCAGTGCCTGCGTTTTATTATTCAT
ATAATTTTATTACTTACATTCTTTAAGAGTCGGGTTCGTTGAATTTTCAG
GGGCACTTTTATTGTATGCAGGGGCCCTCATTGA back to topCoding sequence (CDS) from alignment at F-serratus_M_contig872:87723..90556+ >mRNA_F-serratus_M_contig872.20090.1 ID=mRNA_F-serratus_M_contig872.20090.1|Name=mRNA_F-serratus_M_contig872.20090.1|organism=Fucus serratus male|type=CDS|length=2880bp|location=Sequence derived from alignment at F-serratus_M_contig872:87723..90556+ (Fucus serratus male) ATGGTCCAGAACGGTGGCACGGAGGCCTCATTTGAGCGCCCCGACCAGGG TGCGAAAGGCACCAGAGATTTTGCGAGTCCCGAGCGTTGCGCTCTGGTGT TTGGATTGTTTCAATCAGTTGAAGCTGTAAACACACTCGGCTCCATCTAC AAGGCCCAGCTATTGCCCGAGCTACAAATTTTGCGGCTCTCTGTGGGGGA CACGGTGTTCGAGCAATGGGATTATCATAGCATGATGGTCCAGAACGGTG GCACGGAGGCCTCATTTGAGCGCCCCGACCAGGGTGCGAAAGGCACCAGA GATTTTGCGAGTCCCGAGCGTTGCGCTCTGGTGTTTGGATTGTTTCAATC AGTTGAAGCTGTAAACACACTCGGCTCCATCTACAAGGCCCAGCTATTGC CCGAGCTACAAATTTTGCGGCTCTCTGTGGGGGACACGGTGTTCGAGCAA TGGGATTATCATAGCATGGTCTACGTCATTGTCAGGGGGACCGTAGAGCT GAAGTCGACGAAGGCTGGTGTTCCGTTTCGAGTCGGCAAATTCGGCGTCG GAGAGGTCTACGTCATTGTCAGGGGGACCGTAGAGCTGAAGTCGACGAAG GCTGGTGTTCCGTTTCGAGTCGGCAAATTCGGCGTCGGAGAGGTGATTGG CTCCCCGTTGGCGGAGAAATGCCAGACGACGGCGAGATGTACTGACGATA GCATCCTCATCGGTTTGGATGGGGAACATCTTAAGGCGATCGCTACAAGC TCGAGAGACGCGGAACGCATGGCGAAGGAGGTGATTGGCTCCCCGTTGGC GGAGAAATGCCAGACGACGGCGAGATGTACTGACGATAGCATCCTCATCG GTTTGGATGGGGAACATCTTAAGGCGATCGCTACAAGCTCGAGAGACGCG GAACGCATGGCGAAGGAGGCGTTCCTCAAGGATGTCGCGGCGATGTCTTT GTTCAGTGATAGCGACCTCAACGTCGTCGGCAAGCTGTTCAAGACTTGTA CGCTGAAGGAGAACGAGGTGCTCTGCCAAGAAGGGACGCGTGCCAACCAC TTGTACGTGGTAAAGCGCGGGTTTTTCCGTCTTCTGAAGGCATTTTTGCC CAAGGCTTCTTCTACTGGTGACGGTATCAAGGACAGGGCATCGAGTGAAG GCCCGTATTCCTGTGGTGGGAGACGCCTGATGCACTTTGAGCTTGGGGAG ATTGGTCCAAAAGAGATGCTTGGAGAAAGCGGTCTGTTTCATAATGAGGC GGAAGCTTCCTCAGGGGCGGTGGGCACTACGGCCAGGGCTAAGGTCCCAA TGTCAGCGGCGACTGGTGAATACGAGGCGGGTCCGCTCTACCCCCCTTCC TCTGCATCAGAAGTCGAAAACAACGCAGAAGGAAGAATATATACGCCGGC GACACCCAAATCAGCACGTGTAATGCAAGCGGCGTCAGCCACGAGAAACA TGAATGTTTTGTCGGCCACCAACACGCCATCGCCGACTCGCCCGAAGGCA GGCGTAAAAGGTGACGCCGATCCCACTGCAATCTTTTGTTCTCCTTCGAG ACCACGACAACGGAAGAAGGGCTACCACATTGTGTCTGCGGTGGCCTCGA GGGGCGGCGCTCAGGTGTACGTCGCCAGCATTTTTGACCTCAAGCTGTTG CTGAGAGATTTGCCCAATTTGCGATGCTTCATAGACATCACCCGTCGGGT TCACGAGGCGCGGGCGAAGTGCTGGGACGCCCAAGCCCTGGCGGAACAGC TGCGAGAACAGATAGCATGGGAAGGGTACAAACGGAAAGTCATTTCGGAG ACCGTGAGACTAGATCGCCTCAAACACATTATGGGGTCTAGCGGTATCGG CTGCAGTGTACATAGGTGGGGAGGGAGTGGAGATGATATCGACTCTTGAG CGTTCCTCAAGGATGTCGCGGCGATGTCTTTGTTCAGTGATAGCGACCTC AACGTCGTCGGCAAGCTGTTCAAGACTTGTACGCTGAAGGAGAACGAGGT GCTCTGCCAAGAAGGGACGCGTGCCAACCACTTGTACGTGGTAAAGCGCG GGTTTTTCCGTCTTCTGAAGGCATTTTTGCCCAAGGCTTCTTCTACTGGT GACGGTATCAAGGACAGGGCATCGAGTGAAGGCCCGTATTCCTGTGGTGG GAGACGCCTGATGCACTTTGAGCTTGGGGAGATTGGTCCAAAAGAGATGC TTGGAGAAAGCGGTCTGTTTCATAATGAGGCGGAAGCTTCCTCAGGGGCG GTGGGCACTACGGCCAGGGCTAAGGTCCCAATGTCAGCGGCGACTGGTGA ATACGAGGCGGGTCCGCTCTACCCCCCTTCCTCTGCATCAGAAGTCGAAA ACAACGCAGAAGGAAGAATATATACGCCGGCGACACCCAAATCAGCACGT GTAATGCAAGCGGCGTCAGCCACGAGAAACATGAATGTTTTGTCGGCCAC CAACACGCCATCGCCGACTCGCCCGAAGGCAGGCGTAAAAGGTGACGCCG ATCCCACTGCAATCTTTTGTTCTCCTTCGAGACCACGACAACGGAAGAAG GGCTACCACATTGTGTCTGCGGTGGCCTCGAGGGGCGGCGCTCAGGTGTA CGTCGCCAGCATTTTTGACCTCAAGCTGTTGCTGAGAGATTTGCCCAATT TGCGATGCTTCATAGACATCACCCGTCGGGTTCACGAGGCGCGGGCGAAG TGCTGGGACGCCCAAGCCCTGGCGGAACAGCTGCGAGAACAGATAGCATG GGAAGGGTACAAACGGAAAGTCATTTCGGAGACCGTGAGACTAGATCGCC TCAAACACATTATGGGGTCTAGCGGTATCGGCTGCAGTGTACATAGGTGG GGAGGGAGTGGAGATGATATCGACTCTTGA back to top
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