mRNA_F-serratus_M_contig871.20083.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig871.20083.1
Unique NamemRNA_F-serratus_M_contig871.20083.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
[Close]
BLAST of mRNA_F-serratus_M_contig871.20083.1 vs. uniprot
Match: D7FP11_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FP11_ECTSI)

HSP 1 Score: 111 bits (278), Expect = 3.040e-24
Identity = 71/208 (34.13%), Postives = 93/208 (44.71%), Query Frame = 2 
Query:   47 LYAKGFVGNICGVLFWYGLEHVITDQSPDTPWTGLVSYAAGVMLLMFIWRWKENCGLDSD--EEREKERGPGELSEEIA------------------------------------VAVRNGQATWEVEDDLDGP--------RFCW--PAWVTTTLEISGVVAAWTGVEWYIWDDDYIIRTWYRDVLYIVGGLAILLTTGTFLELSGT 526
            LYAK    N+CGV+FW G+E +I D  P+  WTGLV +  G+ +L+   R   N GL+       + + GP   + E A                                    VA         V     G         R C   P WVTT  E++GVV AWTG+EWY+W+ DYI  +  RD+ YI  GL IL+ TGTF  L+GT
Sbjct:  168 LYAKALFCNVCGVVFWKGVEEIIEDNGPNKDWTGLVFFVIGISILIATDRLSMNSGLEDGLPPAVDIQAGPAACTIETAAWDASSSNPDLRAPSSSPLLLDVVVNDLSCPGCSRLVAAPTSFGGGNVRSPCGGEGAGSRRRGRGCVEVPRWVTTAAELTGVVFAWTGIEWYVWEGDYIPDSALRDLGYIAVGLGILVGTGTFFNLAGT 375
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig871.20083.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FP11_ECTSI3.040e-2434.13Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig871contigF-serratus_M_contig871:321716..323632 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size912
Cds size564
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig871.20083.1prot_F-serratus_M_contig871.20083.1Fucus serratus malepolypeptideF-serratus_M_contig871 321892..323226 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932548.641278-UTR-F-serratus_M_contig871:321715..3218911622932548.641278-UTR-F-serratus_M_contig871:321715..321891Fucus serratus maleUTRF-serratus_M_contig871 321716..321891 -
1690964360.3330896-UTR-F-serratus_M_contig871:321715..3218911690964360.3330896-UTR-F-serratus_M_contig871:321715..321891Fucus serratus maleUTRF-serratus_M_contig871 321716..321891 -
1622932548.7013993-UTR-F-serratus_M_contig871:323226..3232891622932548.7013993-UTR-F-serratus_M_contig871:323226..323289Fucus serratus maleUTRF-serratus_M_contig871 323227..323289 -
1690964360.3954434-UTR-F-serratus_M_contig871:323226..3232891690964360.3954434-UTR-F-serratus_M_contig871:323226..323289Fucus serratus maleUTRF-serratus_M_contig871 323227..323289 -
1622932548.7181964-UTR-F-serratus_M_contig871:323523..3236321622932548.7181964-UTR-F-serratus_M_contig871:323523..323632Fucus serratus maleUTRF-serratus_M_contig871 323524..323632 -
1690964360.410622-UTR-F-serratus_M_contig871:323523..3236321690964360.410622-UTR-F-serratus_M_contig871:323523..323632Fucus serratus maleUTRF-serratus_M_contig871 323524..323632 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932548.6545722-CDS-F-serratus_M_contig871:321891..3222161622932548.6545722-CDS-F-serratus_M_contig871:321891..322216Fucus serratus maleCDSF-serratus_M_contig871 321892..322216 -
1690964360.345232-CDS-F-serratus_M_contig871:321891..3222161690964360.345232-CDS-F-serratus_M_contig871:321891..322216Fucus serratus maleCDSF-serratus_M_contig871 321892..322216 -
1622932548.6752696-CDS-F-serratus_M_contig871:322407..3225761622932548.6752696-CDS-F-serratus_M_contig871:322407..322576Fucus serratus maleCDSF-serratus_M_contig871 322408..322576 -
1690964360.3556478-CDS-F-serratus_M_contig871:322407..3225761690964360.3556478-CDS-F-serratus_M_contig871:322407..322576Fucus serratus maleCDSF-serratus_M_contig871 322408..322576 -
1622932548.6883411-CDS-F-serratus_M_contig871:323156..3232261622932548.6883411-CDS-F-serratus_M_contig871:323156..323226Fucus serratus maleCDSF-serratus_M_contig871 323157..323226 -
1690964360.3784657-CDS-F-serratus_M_contig871:323156..3232261690964360.3784657-CDS-F-serratus_M_contig871:323156..323226Fucus serratus maleCDSF-serratus_M_contig871 323157..323226 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig871.20083.1

>prot_F-serratus_M_contig871.20083.1 ID=prot_F-serratus_M_contig871.20083.1|Name=mRNA_F-serratus_M_contig871.20083.1|organism=Fucus serratus male|type=polypeptide|length=188bp
MLLMFIWRWKENCGLDSDEEREKERGPGELSEEIAVAVRNGQATWEVEDD
LDGPRFCWPAWVTTTLEISGVVAAWTGVEWYIWDDDYIIRTWYRDVLYIV
GGLAILLTTGTFLELSGTPLGGVARRKTEIVPASELLRRFSSTALNGIRG
SDKKQQQLRRQVATGCSPQQPLAHHEEGFKRGETKDL*
back to top

mRNA from alignment at F-serratus_M_contig871:321716..323632-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig871.20083.1 ID=mRNA_F-serratus_M_contig871.20083.1|Name=mRNA_F-serratus_M_contig871.20083.1|organism=Fucus serratus male|type=mRNA|length=1917bp|location=Sequence derived from alignment at F-serratus_M_contig871:321716..323632- (Fucus serratus male)
CGACGAGCCAGATCTAGCGACACTCCCGCTCTTACAGAAGATAGCGCTAT
ATGCGAAGGGTTTTGTGGGGAATATCTGCGGCGTCCTCTTCTGGTACGGG
CTAGAACACGTGAGATAACGAACAGGAGATCGACGGACCTGTGGCAAGGC
CGGCGACATTATCCGGTGGTTCTGGTCCGTTGACATCGTTTGTCTTCCTG
AATCAAGTCGCCCCGCAGGCACGGGAGGAAAAAGTTGGTTTGATGGTTTT
AAAATTTGGCGTGGGGGGTGGGGGGGGGGGATACTATTTAATATTAATAG
TAATCGATATGCCTTTTTCTGCCGCTCTTATATCCTGGGTAAGGTTATCA
CGGACCAGAGTCCGGACACCCCCTGGACAGGCCTCGTGTCCTACGCTGCC
GGAGTTATGCTCCTCATGTTTATCTGGAGGTGGAAGGAGAACTGCGGGCT
GGACAGCGACGAAGAGAGAGAAAAGGGTGGGTGTGTAAACCACACGCATC
TTAAGATCCTTGCCGCAAACTCTGCCCAAGCATAATGCTCTGCGTGGCAA
TCCCTTTCCATAGAAGTTGCGTATGAAGAGTTGCTTATTAGTTGCTAGGC
GACACGGTAGAGCTGTCCGCCGCTGGCTGAGTTACCTTTCGTGCGGGTTT
CGCCACGAGTCCAGGCGTCACCCTCAACGGTGTATTTTTTGCCCCTGGTT
CTAATCTTGACAGCGGAGCTCATACCGCCATGTATATCATATAGGTGTCC
GGAGGAGGGCGGACCTTCTCTTGAGGCATACCAGTACGCACGTGTTCGTT
TGGGACTGGTCTTGGCCGTGTTTGCCACCCGAGGAAAAATCAGGAAATAT
AATAAGGACACCAGAGAGACTACACACGCGAGGATCTCATAACACGTTCT
CGTCTTCATTTACACGTGCATCTAACGACGAAAAATAATTCAGAAGTTAT
GCAAACTGAAAAGGAACTGACGAAAGCGACTCGTGCCGTCTCTTGCCGCT
ACCCCACCCCCTCTACCTCTCTCTCCCTCTGCCATCGGTGACTACCGGCG
TTACAGAGCGCGGCCCAGGCGAGCTCAGCGAAGAGATAGCGGTCGCAGTT
CGAAACGGGCAGGCGACGTGGGAGGTCGAAGATGATCTCGACGGCCCTCG
ATTCTGCTGGCCGGCGTGGGTCACGACGACGTTGGAGATTTCGGGAGTCG
TGGCGGCGTGGACGGGAGTAGAGTGGTGAGAACTTATCGTGTGGAGCGTC
CGAACGTTCCGGTAGTGCTATGAAACGACCTTGAGCTTTCCGCTAGGCAA
CTTCTTTCTCTTCTCCCCTCCCCATTTCATCTCTATTTTGTCGAACGTCC
ATACAACCCGACTGCTGGACATCGACCTACCTCGTATGTTCCGCGCTCTT
CGCGCGACACGTCAAGGTACATCTGGGACGACGACTATATCATCAGAACG
TGGTACCGAGATGTACTGTACATTGTCGGTGGTCTCGCAATCCTCCTGAC
GACGGGAACGTTCCTCGAACTTTCTGGCACCCCCCTGGGCGGGGTGGCGC
GAAGGAAGACAGAAATCGTGCCTGCATCCGAGCTGCTGCGACGGTTCTCG
TCAACCGCTCTGAATGGCATCCGAGGCTCCGACAAGAAGCAGCAGCAGTT
GCGGAGGCAGGTTGCGACTGGTTGCTCCCCCCAGCAACCTCTCGCCCACC
ACGAGGAAGGTTTCAAGAGGGGTGAAACAAAAGACCTTTAAGACCCCGCC
TTGCTTCGCCATGTCAGTGTTTTAGGCTTCTTGGCAGACAAATTGCCGAG
AAGTAATGGTCCGTCCAGTTGTTCTACCTAGCATGACCTCCGGCCTTCTG
GCGTGTATTGGCCGAGTATTATATGTCATCAGAATTGGTGACGTGGAACG
TTTTCCCTTGTTTTGTA
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig871:321716..323632-

>mRNA_F-serratus_M_contig871.20083.1 ID=mRNA_F-serratus_M_contig871.20083.1|Name=mRNA_F-serratus_M_contig871.20083.1|organism=Fucus serratus male|type=CDS|length=1128bp|location=Sequence derived from alignment at F-serratus_M_contig871:321716..323632- (Fucus serratus male)
ATGCTCCTCATGTTTATCTGGAGGTGGAAGGAGAACTGCGGGCTGGACAG
CGACGAAGAGAGAGAAAAGGATGCTCCTCATGTTTATCTGGAGGTGGAAG
GAGAACTGCGGGCTGGACAGCGACGAAGAGAGAGAAAAGGAGCGCGGCCC
AGGCGAGCTCAGCGAAGAGATAGCGGTCGCAGTTCGAAACGGGCAGGCGA
CGTGGGAGGTCGAAGATGATCTCGACGGCCCTCGATTCTGCTGGCCGGCG
TGGGTCACGACGACGTTGGAGATTTCGGGAGTCGTGGCGGCGTGGACGGG
AGTAGAGTGAGCGCGGCCCAGGCGAGCTCAGCGAAGAGATAGCGGTCGCA
GTTCGAAACGGGCAGGCGACGTGGGAGGTCGAAGATGATCTCGACGGCCC
TCGATTCTGCTGGCCGGCGTGGGTCACGACGACGTTGGAGATTTCGGGAG
TCGTGGCGGCGTGGACGGGAGTAGAGTGGTACATCTGGGACGACGACTAT
ATCATCAGAACGTGGTACCGAGATGTACTGTACATTGTCGGTGGTCTCGC
AATCCTCCTGACGACGGGAACGTTCCTCGAACTTTCTGGCACCCCCCTGG
GCGGGGTGGCGCGAAGGAAGACAGAAATCGTGCCTGCATCCGAGCTGCTG
CGACGGTTCTCGTCAACCGCTCTGAATGGCATCCGAGGCTCCGACAAGAA
GCAGCAGCAGTTGCGGAGGCAGGTTGCGACTGGTTGCTCCCCCCAGCAAC
CTCTCGCCCACCACGAGGAAGGTTTCAAGAGGGGTGAAACAAAAGACCTT
TAAGTACATCTGGGACGACGACTATATCATCAGAACGTGGTACCGAGATG
TACTGTACATTGTCGGTGGTCTCGCAATCCTCCTGACGACGGGAACGTTC
CTCGAACTTTCTGGCACCCCCCTGGGCGGGGTGGCGCGAAGGAAGACAGA
AATCGTGCCTGCATCCGAGCTGCTGCGACGGTTCTCGTCAACCGCTCTGA
ATGGCATCCGAGGCTCCGACAAGAAGCAGCAGCAGTTGCGGAGGCAGGTT
GCGACTGGTTGCTCCCCCCAGCAACCTCTCGCCCACCACGAGGAAGGTTT
CAAGAGGGGTGAAACAAAAGACCTTTAA
back to top