mRNA_F-serratus_M_contig871.20082.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig871.20082.1
Unique NamemRNA_F-serratus_M_contig871.20082.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig871.20082.1 vs. uniprot
Match: A0A6H5K7Y7_9PHAE (Signal peptidase complex subunit 2 n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K7Y7_9PHAE)

HSP 1 Score: 314 bits (805), Expect = 2.730e-107
Identity = 147/182 (80.77%), Postives = 166/182 (91.21%), Query Frame = 1
Query:    1 EEELMVPQKVETGDSVKMKQVMDDAVIKAVLEMGYDEDHTLNNAKLAIMALACIFAVTAQFWPQPFPDSRPLLAACCVSYFACSMALHLIVTYWEKDIILATARSNSRSLRKGMQVKTDFPRFDERYTVSVEERKPGAKPIEETWNVGKYFDYEGHFDEWGLGDAVKKLVGRVEKRVKDRNK 546
            E+EL+VPQ VETGD+VKMKQ+MDDAVIKAVLEMGY+EDHTLNNAKLA+MALAC+FAVTAQFWPQPFP+SR LLA CC SYF CS  LHLIVTYWEKD+ILAT RS+SRSL KG+ V+TDFPRFDE YTVSVEERKPG+KPIEE W+VGKYFDYEG+FDEWG+GDAVK LV R+EKR +D+ K
Sbjct:    3 EDELIVPQSVETGDTVKMKQIMDDAVIKAVLEMGYEEDHTLNNAKLAVMALACVFAVTAQFWPQPFPESRALLAVCCFSYFTCSFGLHLIVTYWEKDLILATKRSSSRSLGKGIFVRTDFPRFDEIYTVSVEERKPGSKPIEEQWHVGKYFDYEGNFDEWGMGDAVKNLVTRLEKRARDKKK 184          
BLAST of mRNA_F-serratus_M_contig871.20082.1 vs. uniprot
Match: A0A8J2SMV2_9STRA (Signal peptidase complex subunit 2 n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SMV2_9STRA)

HSP 1 Score: 165 bits (418), Expect = 1.270e-48
Identity = 80/171 (46.78%), Postives = 113/171 (66.08%), Query Frame = 1
Query:   22 QKVETGDSVKMKQVMDDAVIKAVLEMGYDEDHTLNNAKLAIMALACIFAVTAQFWPQPFPDSRPLLAACCVSYFACSMALHLIVTYWEKDIILATARSNSRSLRKGMQVKTDFPRFDERYTVSVEERKPGAKPIEETWNVGKYFDYEGHFDEWGLGDAVKKLVGRVEKRVK 534
            Q ++TGDS+K+KQ++D+A +KAVL  GYDE H ++N K+++M +AC+FA  AQF P PFP  RP+L  CC  YF  S    L+V Y E+DI+L T   N+     G++V+TDFP+F + +T+ VE   P A P EE   VGK+FD  G+F E G  D V+K+V + E + K
Sbjct:   18 QHIDTGDSLKVKQILDEATVKAVLAKGYDEVHFIDNLKISLMIIACLFACAAQFNPIPFPKVRPILGVCCGGYFVFSGIHQLVVKYVERDIVLITKPKNAEH---GLRVRTDFPKFQDLFTIIVEYDTPDAPPYEEKHCVGKFFDTGGYFWEAGFADTVQKMVAKFESKKK 185          
BLAST of mRNA_F-serratus_M_contig871.20082.1 vs. uniprot
Match: K8YV93_NANGC (Signal peptidase complex subunit 2 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=K8YV93_NANGC)

HSP 1 Score: 164 bits (416), Expect = 5.280e-48
Identity = 81/176 (46.02%), Postives = 123/176 (69.89%), Query Frame = 1
Query:   19 PQKVETGDSVKMKQVMDDAVIKAVLEMGYDEDHTLNNAKLAIMALACIFAVTAQFWPQPFPDSRPLLAACCVSYFACSMALHLIVTYWEKDIILATA--RSNSRSLRKGMQVKTDFPRFDERYTVSVEERKPGAKP-IEETWNVGKYFDYEGHFDEWGLGDAVKKLVGRVEKRVKD 537
            P  ++TGD +K+KQV+D+AV+KA+++ GY+E+   +N KLA+M +AC+FA+ AQF+P PFP+SRPLL  CC++YF  S  + LIV+Y E+D IL T   RS  ++  + ++V+T FPRF + YTV VEE      P +   +++GK FD EG+F E GL   V++L+ R +K++ D
Sbjct:   18 PLHIDTGDQMKVKQVLDEAVVKAIVDAGYEENFFYDNIKLALMVIACVFALIAQFYPMPFPESRPLLGVCCLAYFLASTIIQLIVSYVEQDTILTTQPLRSGGKA-GEALKVRTQFPRFQDEYTVFVEEAGMQDPPTVSSKFSIGKVFDEEGNFYEEGLAREVQRLLDRYKKQMWD 192          
BLAST of mRNA_F-serratus_M_contig871.20082.1 vs. uniprot
Match: A0A7S1Y7Q9_9STRA (Signal peptidase complex subunit 2 n=2 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1Y7Q9_9STRA)

HSP 1 Score: 158 bits (399), Expect = 3.020e-45
Identity = 83/180 (46.11%), Postives = 116/180 (64.44%), Query Frame = 1
Query:   28 VETGDSVKMKQVMDDAVIKAVLEMGYDEDHTLNNAKLAIMALACIFAVTAQFWPQPFPDSRPLLAACCVSYFACSMALHLIVTYWEKDIILATARSNSRSLRK-------GMQVKTDFPRFDERYTVSVE-ERKPGAKPIEETWNVGKYFDYEGHFDEWGLGDAVKKLVGRVEKRVKDRN 543
            V+ GD +K+KQ++D+    AVLE    ED  L+N KLAIM LAC+FA  AQF P PFPDSRP+L  CC  YF  S  L  IVT+ +KD IL T  +++R+ +        G++V+TD PRF E Y V +E E+ P    + +TW+VG +FD +G+FDE G+ +AV+ L  R+EK   D++
Sbjct:   31 VDVGDVIKLKQILDETTSAAVLEF-QKEDFRLDNMKLAIMTLACLFACLAQFAPIPFPDSRPVLGICCCIYFVLSGVLQAIVTFLDKDCILITKPTDARAQKSNPNLHQYGIRVRTDLPRFSEYYKVILEFEKMPNTVKVVQTWSVGNFFDVDGYFDEIGMTEAVQGLYKRLEKGEYDKD 209          
BLAST of mRNA_F-serratus_M_contig871.20082.1 vs. uniprot
Match: A0A7R9Z7Z3_9STRA (Signal peptidase complex subunit 2 n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9Z7Z3_9STRA)

HSP 1 Score: 159 bits (401), Expect = 4.520e-45
Identity = 82/178 (46.07%), Postives = 118/178 (66.29%), Query Frame = 1
Query:   28 VETGDSVKMKQVMDDAVIKAVLEM-GYDEDHTLNNAKLAIMALACIFAVTAQFWPQPFPDSRPLLAACCVSYFACSMALHLIVTYWEKDIILATA-------RSNSRSLRKGMQVKTDFPRFDERYTVSVE-ERKPGA---KP-IEETWNVGKYFDYEGHFDEWGLGDAVKKLVGRVE 522
            V+ GD VK+KQ++D+ V    L+     EDHT++N KL+IMALAC FA+ AQF P PFPDSRP+L  CC +YF  S  L L+ T+W+KD I+ T        + NS   + G++++T  PRF E YTV +E ++K G    +P ++ETW+VG++FD EG FDE+GL + +++L  R E
Sbjct:   47 VDVGDVVKLKQILDETVAGTFLDKCSLVEDHTVDNIKLSIMALACTFAMVAQFAPLPFPDSRPVLGGCCAAYFVLSGFLQLVTTFWDKDCIMVTKAVEKAKNQKNSDMEKYGLRIRTSLPRFSEFYTVIIEFQKKYGDGENRPYVKETWSVGQFFDVEGMFDEYGLENEIEELYERFE 224          
BLAST of mRNA_F-serratus_M_contig871.20082.1 vs. uniprot
Match: A0A7S3V7R4_9STRA (Signal peptidase complex subunit 2 n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3V7R4_9STRA)

HSP 1 Score: 155 bits (393), Expect = 2.100e-44
Identity = 85/197 (43.15%), Postives = 120/197 (60.91%), Query Frame = 1
Query:    1 EEELMVPQKVETGDSVKMKQVMDDAVIKAVLE-------------MGYDEDHTLNNAKLAIMALACIFAVTAQFWPQPFPDSRPLLAACCVSYFACSMALHLIVTYWEKDIILAT---------ARSNSRSLRKGMQVKTDFPRFDERYTVSVE-ERKPGAKPIEETWNVGKYFDYEGHFDEWGLGDAVKKLVGRVE 522
            EEE +V  +V+TGD +K+KQ++D+ V    LE             +G  EDH L+N KL +MA+AC FA+ AQF P PFP+ RP+L  CC  YF+ S  L LI T+ +KD IL T          ++N    + G++V+T FPRF E YTV +E E    +  +++TW+VG++FD EG FDE+GL  AV+KL  + E
Sbjct:   10 EEEEVVLLQVDTGDIIKLKQILDETVANTFLEENTLEGHDSRAKNIGLHEDHRLSNIKLILMAVACAFAMVAQFSPLPFPNCRPILGVCCAVYFSLSGVLQLITTFLDKDCILITKALEGKPAVVKNNPNLAKYGLRVRTIFPRFSEFYTVRIEFEGLENSPFVKDTWSVGEFFDKEGMFDEYGLQYAVEKLYRKFE 206          
BLAST of mRNA_F-serratus_M_contig871.20082.1 vs. uniprot
Match: A0A7S1Z321_TRICV (Signal peptidase complex subunit 2 (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1Z321_TRICV)

HSP 1 Score: 152 bits (383), Expect = 2.470e-42
Identity = 81/176 (46.02%), Postives = 111/176 (63.07%), Query Frame = 1
Query:   28 VETGDSVKMKQVMDDAVIKAVLEM-GYDEDHTLNNAKLAIMALACIFAVTAQFWPQPFPDSRPLLAACCVSYFACSMALHLIVTYWEKDIILAT-------ARSNSRSLRKGMQVKTDFPRFDERYTVSVEERK---PGAKP--IEETWNVGKYFDYEGHFDEWGLGDAVKKLVGR 516
            V+ GD VK+KQV+D+ V    L+     EDH ++N KL IMA+AC FA+ AQF P PFPDSRP+L  CC +YF  S  L ++ T+W+KD I+ T       A  N    + G++++T  PRF E YTV +E +K   P  K   ++ETW+VG++FD EG FDE+GL D V+ L  R
Sbjct:   54 VDVGDVVKLKQVLDETVAGTFLDTCKMAEDHAIDNIKLTIMAVACAFAMVAQFAPLPFPDSRPVLGGCCAAYFLLSGILQIVTTFWDKDCIMVTKPVEKGVAPKNLDMEKYGLRIRTILPRFSEYYTVIMEFQKKHEPDEKRKFVKETWSVGQFFDVEGMFDEFGLMDEVEDLYER 229          
BLAST of mRNA_F-serratus_M_contig871.20082.1 vs. uniprot
Match: A0A835ZBL5_9STRA (Signal peptidase complex subunit 2 (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBL5_9STRA)

HSP 1 Score: 151 bits (381), Expect = 3.870e-42
Identity = 82/204 (40.20%), Postives = 120/204 (58.82%), Query Frame = 1
Query:    4 EELMVPQKVETGDSVKMKQVMDDAVIKAVLEMGYDEDHTLNNAKLAIMALACIFAVTAQFWPQPFPDSRPLLAACCVSYFACSMALHLIVTYWEKDIILATARSNSRSLRKG--MQVKTDFPRFDERYTVSVE------------------------------ERKPGAKPIEE---TWNVGKYFDYEGHFDEWGLGDAVKKLV 510
            EE   P KV+TGDS+K+KQ MD+AV++AV++MG++EDH  +N KL +M +AC FA  AQ +P+PFP+SRP+LA CC+SYFACS  L ++++  E+D+IL T  +N     KG  ++++T FPRF E YT  +E                               ++PG    ++     NVG YFD EG+  E G+ + + K V
Sbjct:   48 EEEREPSKVDTGDSLKVKQAMDEAVVRAVMDMGFEEDHKWSNVKLLLMVVACAFAGLAQLYPKPFPESRPVLAVCCISYFACSALLQVVMSCIEQDVILITKPNN-----KGVALRIRTAFPRFQEIYTTEIEVLAGAASKHATKLQLELMPLITSFLPISIGRKQPGDAATKDGAVKMNVGNYFDVEGYXXEEGVVEDMAKAV 246          
BLAST of mRNA_F-serratus_M_contig871.20082.1 vs. uniprot
Match: A0A7S1GHQ4_CYCTE (Signal peptidase complex subunit 2 n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1GHQ4_CYCTE)

HSP 1 Score: 150 bits (378), Expect = 8.810e-42
Identity = 82/179 (45.81%), Postives = 116/179 (64.80%), Query Frame = 1
Query:    1 EEELMVPQKVETGDSVKMKQVMDDAVIKAVLEMGYDEDHTLNNAKLAIMALACIFAVTAQFWPQPFPDSRPLLAACCVSYFACSMALHLIVTYWEKDIILATAR---SNSRSLRK-GMQVKTDFPRFDERYTVSVE-ERKPGAKPIEETWNVGKYFDYEGHFDEWGLGDAVKKLVGRVE 522
            +EEL + Q V+ GD VK+KQ++D+ V   +LE    ED+ ++NAKL IM  AC+FA+ AQF P PFPDSRP+L ACC  YF  S  L  I T+ +KD IL T     S + +L+K G++V++  PRF E YT+++E    P    +E+ W+VG +FD +G FDE GL  AV+ +  R+E
Sbjct:   53 DEELELLQ-VDVGDMVKLKQILDETVASTILE-NVKEDYRIDNAKLGIMTAACVFAMIAQFAPIPFPDSRPVLGACCCIYFILSGVLQFITTFIDKDCILRTKALPPSGNTNLQKYGLRVRSSLPRFSEFYTLTIEFHGMPETPHVEQKWSVGNFFDVDGMFDEVGLMQAVQDVYKRLE 229          
BLAST of mRNA_F-serratus_M_contig871.20082.1 vs. uniprot
Match: A0A7S3M684_9STRA (Signal peptidase complex subunit 2 n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M684_9STRA)

HSP 1 Score: 148 bits (374), Expect = 1.180e-41
Identity = 77/165 (46.67%), Postives = 107/165 (64.85%), Query Frame = 1
Query:   19 PQKVETGDSVKMKQVMDDAVIKAVLEMGYDEDHTLNNAKLAIMALACIFAVTAQFWPQPFPDSRPLLAACCVSYFACSMALHLIVTYWEKDIILATARSNSRSLRKGMQVKTDFPRFDERYTVSVEER-KPGAKPIEETWNVGKYFDYEGHFDEWGLGDAVKKLV 510
            P  +ETGDSVK+KQV+DDA IKA+ E GYD +++ +N KL +MAL+C+FA+ AQF+P PFP SRPLLA CC +YF  S  L  I+T+ +KD IL      S+     M+++T FPRF E +T+ V+ +  P  K       VG+YF  +G FDE    + V++ V
Sbjct:   31 PFTIETGDSVKVKQVLDDAAIKAITEGGYDANYSWDNMKLLLMALSCVFAMVAQFFPIPFPASRPLLAVCCAAYFIISSVLQYIITFVDKDTILFV--KPSKECAHDMEIRTSFPRFQEYFTLIVQFKGNPNDKKTTAKMYVGRYFTEKGAFDEDAFINDVRRHV 193          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig871.20082.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K7Y7_9PHAE2.730e-10780.77Signal peptidase complex subunit 2 n=2 Tax=Ectocar... [more]
A0A8J2SMV2_9STRA1.270e-4846.78Signal peptidase complex subunit 2 n=1 Tax=Pelagom... [more]
K8YV93_NANGC5.280e-4846.02Signal peptidase complex subunit 2 n=2 Tax=Monodop... [more]
A0A7S1Y7Q9_9STRA3.020e-4546.11Signal peptidase complex subunit 2 n=2 Tax=Grammat... [more]
A0A7R9Z7Z3_9STRA4.520e-4546.07Signal peptidase complex subunit 2 n=1 Tax=Pseudic... [more]
A0A7S3V7R4_9STRA2.100e-4443.15Signal peptidase complex subunit 2 n=1 Tax=Chaetoc... [more]
A0A7S1Z321_TRICV2.470e-4246.02Signal peptidase complex subunit 2 (Fragment) n=1 ... [more]
A0A835ZBL5_9STRA3.870e-4240.20Signal peptidase complex subunit 2 (Fragment) n=1 ... [more]
A0A7S1GHQ4_CYCTE8.810e-4245.81Signal peptidase complex subunit 2 n=1 Tax=Cycloph... [more]
A0A7S3M684_9STRA1.180e-4146.67Signal peptidase complex subunit 2 n=1 Tax=Spumell... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig871contigF-serratus_M_contig871:253765..256848 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score320.5
Seed ortholog evalue5.3e-85
Seed eggNOG ortholog2880.D8LDY7
Preferred nameSPCS2
KEGG koko:K12947
KEGG Pathwayko03060,map03060
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005787,GO:0005789,GO:0006465,GO:0006508,GO:0006518,GO:0006605,GO:0006807,GO:0006810,GO:0006886,GO:0008104,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016485,GO:0019538,GO:0031984,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0034641,GO:0042175,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043603,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0045047,GO:0045184,GO:0046907,GO:0051179,GO:0051234,GO:0051604,GO:0051641,GO:0051649,GO:0070727,GO:0070972,GO:0071702,GO:0071704,GO:0071705,GO:0072594,GO:0072599,GO:0098796,GO:0098827,GO:1901564,GO:1902494,GO:1905368
EggNOG free text desc.signal peptide processing
EggNOG OGsKOG4072@1,KOG4072@2759
Ec32 ortholog descriptionProbable Spc2 homolog, Subunit of Signal Peptidase Complex
Ec32 orthologEc-23_003280.1
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons5
Model size576
Cds size564
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig871.20082.1prot_F-serratus_M_contig871.20082.1Fucus serratus malepolypeptideF-serratus_M_contig871 253777..256848 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932549.799461-UTR-F-serratus_M_contig871:253764..2537761622932549.799461-UTR-F-serratus_M_contig871:253764..253776Fucus serratus maleUTRF-serratus_M_contig871 253765..253776 +
1690964360.9642572-UTR-F-serratus_M_contig871:253764..2537761690964360.9642572-UTR-F-serratus_M_contig871:253764..253776Fucus serratus maleUTRF-serratus_M_contig871 253765..253776 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932549.8126473-CDS-F-serratus_M_contig871:253776..2538511622932549.8126473-CDS-F-serratus_M_contig871:253776..253851Fucus serratus maleCDSF-serratus_M_contig871 253777..253851 +
1690964360.97941-CDS-F-serratus_M_contig871:253776..2538511690964360.97941-CDS-F-serratus_M_contig871:253776..253851Fucus serratus maleCDSF-serratus_M_contig871 253777..253851 +
1622932549.8247933-CDS-F-serratus_M_contig871:254747..2548961622932549.8247933-CDS-F-serratus_M_contig871:254747..254896Fucus serratus maleCDSF-serratus_M_contig871 254748..254896 +
1690964360.990057-CDS-F-serratus_M_contig871:254747..2548961690964360.990057-CDS-F-serratus_M_contig871:254747..254896Fucus serratus maleCDSF-serratus_M_contig871 254748..254896 +
1622932549.8384283-CDS-F-serratus_M_contig871:255488..2555671622932549.8384283-CDS-F-serratus_M_contig871:255488..255567Fucus serratus maleCDSF-serratus_M_contig871 255489..255567 +
1690964360.99926-CDS-F-serratus_M_contig871:255488..2555671690964360.99926-CDS-F-serratus_M_contig871:255488..255567Fucus serratus maleCDSF-serratus_M_contig871 255489..255567 +
1622932549.856701-CDS-F-serratus_M_contig871:256224..2563361622932549.856701-CDS-F-serratus_M_contig871:256224..256336Fucus serratus maleCDSF-serratus_M_contig871 256225..256336 +
1690964361.018211-CDS-F-serratus_M_contig871:256224..2563361690964361.018211-CDS-F-serratus_M_contig871:256224..256336Fucus serratus maleCDSF-serratus_M_contig871 256225..256336 +
1622932549.8715856-CDS-F-serratus_M_contig871:256699..2568481622932549.8715856-CDS-F-serratus_M_contig871:256699..256848Fucus serratus maleCDSF-serratus_M_contig871 256700..256848 +
1690964361.0355618-CDS-F-serratus_M_contig871:256699..2568481690964361.0355618-CDS-F-serratus_M_contig871:256699..256848Fucus serratus maleCDSF-serratus_M_contig871 256700..256848 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig871.20082.1

>prot_F-serratus_M_contig871.20082.1 ID=prot_F-serratus_M_contig871.20082.1|Name=mRNA_F-serratus_M_contig871.20082.1|organism=Fucus serratus male|type=polypeptide|length=188bp
MVPQKVETGDSVKMKQVMDDAVIKAVLEMGYDEDHTLNNAKLAIMALACI
FAVTAQFWPQPFPDSRPLLAACCVSYFACSMALHLIVTYWEKDIILATAR
SNSRSLRKGMQVKTDFPRFDERYTVSVEERKPGAKPIEETWNVGKYFDYE
GHFDEWGLGDAVKKLVGRVEKRVKDRNKKDKKDKKDK*
back to top

mRNA from alignment at F-serratus_M_contig871:253765..256848+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig871.20082.1 ID=mRNA_F-serratus_M_contig871.20082.1|Name=mRNA_F-serratus_M_contig871.20082.1|organism=Fucus serratus male|type=mRNA|length=3084bp|location=Sequence derived from alignment at F-serratus_M_contig871:253765..256848+ (Fucus serratus male)
GAGGAGGAACTAATGGTTCCACAAAAAGTGGAAACGGGAGACAGCGTGAA GATGAAGCAGGTCATGGACGATGCTGTCATCAAGGCGGTGAGACTCGGAA ACCCCAAAATATGTTTCGGTCGCATCTGGACACACACACACACGCGCGGG TATGATTCGTAGCAAGTATCATTGATCCCTTAATACCCCTTGGGAGGATC ATTGCGAGTAACATGCATACAATGCCGAAGATGTCAAGGGCCGGACTGCG CGCGTTTGTGCATTTTAAGAAATGTACACACACTGGGAGGGAAGCACAAG CTCTCAGGGATTAAGTTAGAACTATACGAGTAGAAGGAGAGTGTGTCCCT TTTGTCGCGCTTGATGAGAGGTTTTCGTAATAAGAGCGAGTGCGTCCCCT TCATCGCGTTTGATTTGAGGTTTTCGTAATTACTCCCTTGGGAGGATCCG TGTGAGTGGCGTAGAATGATTGGGATGGCAGGGCCGGATTGCGCGGTTAT GTGCAATACAGTAAATACACACACACAGACACATGGCCAACAATATGTCC ACGAAAAGTAACCCCCGAGGTGGGTTACATGCAGTAGCATAGAATAAGTA CATTGTAGGGCCGGATTGCGCGGCTATGTGCAATTTAATATATATATATA CACACACACACACACACACACACACTTCTTCTCCGTTCCCCCTATCAAGG GAACAATCACGCCTCCGACGGATAGCACGTGATCCGGTCCGAGCTAGCGG GAATCGAGCGAACGGAAAACACTCTCTTGTGCGAGTTTTTTTTTTTGTTT TTTTTTTGCTTTGTTATTATTTTTTTTTTTTGCTTTGTTATTCCATCGAA TCCAATCGTTCCGCGCCGTGCGCCTCCTAGACCCGGTACGGTACAGTACA CCATCCCCTCTGACTCCCACCACACACGTAAAATCGCTCGTGTTTTACTG TGGGTACTGAATTACCTCGCGGAACGATAAAAGGTTCTCGAGATGGGGTA CGACGAAGACCACACCCTTAACAACGCGAAGCTGGCGATCATGGCCCTGG CGTGCATTTTCGCTGTAACGGCGCAGTTCTGGCCGCAGCCGTTCCCCGAC AGCCGACCCTTGCTCGCCGCCTGCTGTGTGAGGTATGGCTCCTTGCGGAT TTGCTTGAACACCTACACTGCTGTTCTCTCGTTGTCGGGCCCTGCCTGCC TGTGTTTACAACAGTATCCGGCTTGCGCGCCATTTTTGTGGGCCGGTTGT GGAACCTGGCTGCGCTCGTGGCCGTGTAGATTGCGGTCGAGCGGTTCCTG AATGAGCCCGAGCGGTCAAAAGGGCAAAACTTGCCACCTTTTACTATTAA GTAATAGGGAGAGAGAGGGTGGTTCGAGCAGCCCGTCGACGTTTTTTTCT TCTTCTTTTTCCCCCTTACGAATACATATGTAGTCTATACCATAGAAGAG TGAGTGGAACTCGAGAATATTGGCGCTCTACATTTTAGTAAGCGATGTGT TAATGACCCGAAGACCCGAAGGTTGCATTTCAATTTTGAATGGAAGAGTC ACGAATTATCTTGCTATATATGATCATGTGACGCAATAACGAAAGACATA AAAAAAAACGAAAGCGGGGAAAACATGGTGTGTTGTATTAAAGGTTTTCG TTCCGCGAAAATATTGAAGCCGAAGAAAGAAGTAAGAACGCCTCCTTCCT TTTTTTACGTCCCCCTTTCCGCAGCTACTTCGCGTGTAGCATGGCGTTGC ACCTTATCGTGACATACTGGGAGAAGGATATCATCCTCGCCACGGCAAGA AGCGTGAGTGACCGCGCCCCGAATCGCCCCTTTCTGTTCCGTTCTCGACG CTACACCTTGCCGTGCACCATGCGCCCCCAGAAAATCGTGACGGATCATT TCAGACCGTACGGAATCATCCGAATCATCTCGGACCGTGCCGAATCATCC GAATCATCTCGGACCGTACCGAATCATCCGAATCATCTCGGACCGTGCCG AATCATCCGAATCATCTCGGACCGTACCGAACCATCCAAATAATTTCGAA CGGTGTAGATGCCGCTTGCAACGCAGCGCCGCACCGAACCGAACCGGTTC GCCTCGTAAGCGTATCTTACAGTAGCATCCGGCGGCACTGGTACTTGACT GTTGCTGTTTGTGCAGTGTATAGCAAACCGATGAAGGAAGGAAGACTTGG TTGGAATCTTGAGACGATGCAGTGCCGCCACCTTATTTGGAATGCCAGGA CAACACCGTTGGCATGACTATCTTATGACTAGAGTACTGCTGTTATGTTA AGGCGGCGGGCCAAGACAGGTGCTTGGGTCCATCCATTCCCCCTTTGTTT TTCTTCTTTTTTCTATGTCATGTATAAGAAAAGTTCCATACCGATAACGA GCAGGCAGGCTCCACGGTTTGTGCGACGCTTTGGTAAACATTTTGTCCTC CACGGTGCAGAATTCGAGATCGCTGCGGAAGGGCATGCAAGTCAAGACAG ACTTTCCGAGGTTCGATGAGCGATACACGGTGTCGGTGGAGGAGAGGAAG CCAGGCGCGAAGCCTATCGAAGGTCGGTGTGTGTGTGTTTGTGTTTTGTG TGTGTTAAGCTCTCGTCCTAGCCGGGGTTGACGCGCATCACATTTCGATG CCAAAGGAACGCCTTCTCGAAATGAACGAAAGCCACGACGGGAATACTAT ATTCGTCGTTCACACCCCAGGGTTATTTTACCATCGGTGAAGAACACTCC CGTTCGATCTCTCTCGTACGCCGCGCGGCACGCTTCTCCATCCTCGAAAC CGTCACCCCCCCCCCCCCCCCACACATCCACATCCACATCCACAAACTGA TGCACTGCCGTGAGTAGTGTTTTCTTGTATTACGTTACGTGCCTTCTCCT CACGGGAGCCCGCGTTTACCTCGAAACCGCGGCAGAAACCTGGAACGTGG GGAAGTACTTCGACTACGAGGGCCACTTCGACGAATGGGGCTTGGGGGAC GCCGTGAAGAAGCTGGTGGGGCGGGTGGAGAAGCGTGTCAAGGATAGAAA CAAAAAGGACAAGAAGGACAAAAAAGACAAGTGA
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig871:253765..256848+

>mRNA_F-serratus_M_contig871.20082.1 ID=mRNA_F-serratus_M_contig871.20082.1|Name=mRNA_F-serratus_M_contig871.20082.1|organism=Fucus serratus male|type=CDS|length=1128bp|location=Sequence derived from alignment at F-serratus_M_contig871:253765..256848+ (Fucus serratus male)
ATGGTTCCACAAAAAGTGGAAACGGGAGACAGCGTGAAGATGAAGCAGGT
CATGGACGATGCTGTCATCAAGGCGATGGTTCCACAAAAAGTGGAAACGG
GAGACAGCGTGAAGATGAAGCAGGTCATGGACGATGCTGTCATCAAGGCG
GTTCTCGAGATGGGGTACGACGAAGACCACACCCTTAACAACGCGAAGCT
GGCGATCATGGCCCTGGCGTGCATTTTCGCTGTAACGGCGCAGTTCTGGC
CGCAGCCGTTCCCCGACAGCCGACCCTTGCTCGCCGCCTGCTGTGTGAGG
TTCTCGAGATGGGGTACGACGAAGACCACACCCTTAACAACGCGAAGCTG
GCGATCATGGCCCTGGCGTGCATTTTCGCTGTAACGGCGCAGTTCTGGCC
GCAGCCGTTCCCCGACAGCCGACCCTTGCTCGCCGCCTGCTGTGTGAGCT
ACTTCGCGTGTAGCATGGCGTTGCACCTTATCGTGACATACTGGGAGAAG
GATATCATCCTCGCCACGGCAAGAAGCCTACTTCGCGTGTAGCATGGCGT
TGCACCTTATCGTGACATACTGGGAGAAGGATATCATCCTCGCCACGGCA
AGAAGCAATTCGAGATCGCTGCGGAAGGGCATGCAAGTCAAGACAGACTT
TCCGAGGTTCGATGAGCGATACACGGTGTCGGTGGAGGAGAGGAAGCCAG
GCGCGAAGCCTATCGAAGAATTCGAGATCGCTGCGGAAGGGCATGCAAGT
CAAGACAGACTTTCCGAGGTTCGATGAGCGATACACGGTGTCGGTGGAGG
AGAGGAAGCCAGGCGCGAAGCCTATCGAAGAAACCTGGAACGTGGGGAAG
TACTTCGACTACGAGGGCCACTTCGACGAATGGGGCTTGGGGGACGCCGT
GAAGAAGCTGGTGGGGCGGGTGGAGAAGCGTGTCAAGGATAGAAACAAAA
AGGACAAGAAGGACAAAAAAGACAAGTGAAAACCTGGAACGTGGGGAAGT
ACTTCGACTACGAGGGCCACTTCGACGAATGGGGCTTGGGGGACGCCGTG
AAGAAGCTGGTGGGGCGGGTGGAGAAGCGTGTCAAGGATAGAAACAAAAA
GGACAAGAAGGACAAAAAAGACAAGTGA
back to top