mRNA_F-serratus_M_contig871.20080.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig871.20080.1
Unique NamemRNA_F-serratus_M_contig871.20080.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig871.20080.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig871contigF-serratus_M_contig871:194973..195827 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size363
Cds size201
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig871.20080.1prot_F-serratus_M_contig871.20080.1Fucus serratus malepolypeptideF-serratus_M_contig871 195095..195787 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932548.5345564-UTR-F-serratus_M_contig871:194972..1950941622932548.5345564-UTR-F-serratus_M_contig871:194972..195094Fucus serratus maleUTRF-serratus_M_contig871 194973..195094 +
1690964360.2835474-UTR-F-serratus_M_contig871:194972..1950941690964360.2835474-UTR-F-serratus_M_contig871:194972..195094Fucus serratus maleUTRF-serratus_M_contig871 194973..195094 +
1622932548.5861988-UTR-F-serratus_M_contig871:195787..1958271622932548.5861988-UTR-F-serratus_M_contig871:195787..195827Fucus serratus maleUTRF-serratus_M_contig871 195788..195827 +
1690964360.320892-UTR-F-serratus_M_contig871:195787..1958271690964360.320892-UTR-F-serratus_M_contig871:195787..195827Fucus serratus maleUTRF-serratus_M_contig871 195788..195827 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932548.5483181-CDS-F-serratus_M_contig871:195094..1952121622932548.5483181-CDS-F-serratus_M_contig871:195094..195212Fucus serratus maleCDSF-serratus_M_contig871 195095..195212 +
1690964360.295226-CDS-F-serratus_M_contig871:195094..1952121690964360.295226-CDS-F-serratus_M_contig871:195094..195212Fucus serratus maleCDSF-serratus_M_contig871 195095..195212 +
1622932548.5667214-CDS-F-serratus_M_contig871:195704..1957871622932548.5667214-CDS-F-serratus_M_contig871:195704..195787Fucus serratus maleCDSF-serratus_M_contig871 195705..195787 +
1690964360.3111074-CDS-F-serratus_M_contig871:195704..1957871690964360.3111074-CDS-F-serratus_M_contig871:195704..195787Fucus serratus maleCDSF-serratus_M_contig871 195705..195787 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig871.20080.1

>prot_F-serratus_M_contig871.20080.1 ID=prot_F-serratus_M_contig871.20080.1|Name=mRNA_F-serratus_M_contig871.20080.1|organism=Fucus serratus male|type=polypeptide|length=67bp
MLRRRRHEYLYKLRKIYEWMMEEREIHSGFLPTYTTVSQVFQVKMCLCST
CLMRQQNTHARARDGP*
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mRNA from alignment at F-serratus_M_contig871:194973..195827+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig871.20080.1 ID=mRNA_F-serratus_M_contig871.20080.1|Name=mRNA_F-serratus_M_contig871.20080.1|organism=Fucus serratus male|type=mRNA|length=855bp|location=Sequence derived from alignment at F-serratus_M_contig871:194973..195827+ (Fucus serratus male)
GTCCAGATGTGGGATCTGTCCGAACGGGCACCGACATGGGCAGCCGAAGG
ACGGCCAGGCCAATGTTGCAAACCCACGGGAGAGAGAGAAACACATACAG
GATTTAATGTAGGATTAGTAAAATGCTTCGCAGGCGAAGACATGAGTATC
TATACAAACTCCGGAAGATATATGAGTGGATGATGGAAGAAAGAGAAATA
CACTCGGGATTCTTACCCACTTACACCACTGTCAGTCAGGGCGGGTCTTA
GATCAAAAAAAGCGCAGGGAACATAGAACGTGGAACTTCGAATTACTTGC
CATTCCTTGTTCCCTGTTCTATACGCTGTGTCCAGAAAAAAAAAAAGCTA
GAACGAGGAACTGTGGAACTTGGTTTTAGGTGAAAAGTCTGGTAGAGCCA
CGATTTGAGAACATCGACACAACGACACAGAAGGCATTGGCGCATGGAAA
ATTTTATTTTGACTTCGGACCATTGTTTTGGAAATTTCTGAGCCTTTTGC
CCTCGACCAGCCCGTTCCATGTGGGCTCTTCACTAATAAAAAGGTACGTG
GAGGTTAAAATTATTTTTGCGGAGGGAACAGCAAACGTGGAACTGCGACA
GGTGCAGGAAAATTATTTCCGTGGACCATCTTTTCAGGAAAGTTATTTTT
GACGTTGGCCAATCGTAGAGGGATTCGAAGTTCCACGTTCCTTGTTCCCT
GCACTTTTTTTTTATCTAAGACCCGCCCTCAGTCTTTCAAGTAAAAATGT
GTCTTTGCTCGACTTGTTTGATGAGGCAACAAAACACACACGCGCGAGCG
CGCGACGGCCCATGAGCCGTTGACCTAATAATGCTATTTTGCTCTTCCCT
TCCCC
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Coding sequence (CDS) from alignment at F-serratus_M_contig871:194973..195827+

>mRNA_F-serratus_M_contig871.20080.1 ID=mRNA_F-serratus_M_contig871.20080.1|Name=mRNA_F-serratus_M_contig871.20080.1|organism=Fucus serratus male|type=CDS|length=402bp|location=Sequence derived from alignment at F-serratus_M_contig871:194973..195827+ (Fucus serratus male)
ATGCTTCGCAGGCGAAGACATGAGTATCTATACAAACTCCGGAAGATATA
TGAGTGGATGATGGAAGAAAGAGAAATACACTCGGGATTCTTACCCACTT
ACACCACTGTCAGTCAGGATGCTTCGCAGGCGAAGACATGAGTATCTATA
CAAACTCCGGAAGATATATGAGTGGATGATGGAAGAAAGAGAAATACACT
CGGGATTCTTACCCACTTACACCACTGTCAGTCAGGTCTTTCAAGTAAAA
ATGTGTCTTTGCTCGACTTGTTTGATGAGGCAACAAAACACACACGCGCG
AGCGCGCGACGGCCCATGATCTTTCAAGTAAAAATGTGTCTTTGCTCGAC
TTGTTTGATGAGGCAACAAAACACACACGCGCGAGCGCGCGACGGCCCAT
GA
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