mRNA_F-serratus_M_contig87.20076.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig87.20076.1 vs. uniprot
Match: A0A6H5KTJ7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTJ7_9PHAE) HSP 1 Score: 349 bits (896), Expect = 5.270e-105 Identity = 288/798 (36.09%), Postives = 387/798 (48.50%), Query Frame = 1
Query: 1 KRMNTNLVQKRASR-TPMVYNTVVMSRLIRTQNALINAELET-LGINISQLAPYVNVALELGKRADAAYAAVKERVSRAKQV----AASETATTSPAVKGAVGTGVAQEEQK-----------PEAAAPPLAPALSIPSIAPAAATANPTWLPAVGMTLSVFRVGWGVGVGCHRNVCACKLATNMRWPTAPPAVALAPRVQPPATTPAPGSISASTPLAFSP--AYMAASAEXXXXXXGTEVARGVKTPAHAHA-------------------------YAHTPAHEVQVTPAKMPAYGATPAAHTTERKSLAGHPPPPLPPHAARTEEIQEKIPTQGAYNKRTKRTYTDDASILPALPSDNLEITKREVEPVPGLHVPSAEEQLLGNAPA-LTAAEEQMGKPWFATHVVNHRHAWCCLRDAAERDGMRQVLKERPWANPEDYSDGANQAVGSDVLQLMSLSAQLFLKDLMMSLKSIAWQSNGEQQRICWQVRTGRVESRLENFTDDTNSCQDELRRGLVPRLPPVSDMPRVLLKKEEQSHRNECQEREERWETDLKDKLKAAEELRKRLIRRGQRKLPTGGYKWWEDMEATAKSGWLSQEQQATSEFTRRVAVKHGIGVAASLLKRKQ---DQVHLSLSFDMLPKLALKRGGEEDDVLGGASGGASAGPDLEPEA-TGASTQFADVSVEDIGAVASSVG---GNKRSLDAHQDESPIDIVRNIRRRLT--CKPAADSSGPGGKESGAEAPGGRSAKKIQINNTHLADLLRTTKPRGDRHGWAKILFRAQNGRRGAHA 2232
KRMN L++ R+ T + YNT +MS+LI TQN +I ELE LG+N++ LAP++++ EL KR+D AY AVK +V RAK+ AA + A+ +P P+ A P P+ A P + V T+ + H V LA + AP VA A PP + G+ SA + SP +AA+A XXXXX ++ TP + Q A GA P HA AY K D + L LP+D L+ K++VE + V + EE L + P+ L E+ WF T+VV+HRHAWCCLRDA E+ GMR+VLKERPW NP + +G +A GSDVL+LMS +AQ +LK+++ L +A+Q G + ++ +G VESRL + + ELR+ LVPRLP V ++PRV+L+K E++HR EC+EREERW+ +L D L AEE+RKRLIRRG +KLP G +KWWEDME AKSGWLS+EQ A SEF RRVAVKHGIGV A+L+K+K+ DD + D+ A TG S+ S + G + G KR LD + ++ VRNIRRRL D G G+ P ++INN LA+LLR+TKPRGD WA++L RAQN R+G HA
Sbjct: 53 KRMNVRLIELRSGNSTKIEYNTTIMSKLINTQNKIITDELEQKLGMNLTSLAPHLDLEGELKKRSDTAYLAVKNKVDRAKRSEAHKAAIKAASANPGXXXXXXXXXXXXXXXXXXXXXXXXXXPQVVAMPXXXXXXXPA-------AVPVKMEDVKPTVVTKPMAAPAAATSHHVVQQAHLAPQQQAVVAPQPVAPAQVKLPPTSVAVAGTASAPLVIGASPDSTPVAAAAPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVAQHSQTPVYGGQ-------APGAAXXXXXXXXXXXXRAAPQAPTAHAPAXXXXXXXXXXXPAYTKPKVYNDVDPRTGLQKLPTDKLDSAKKQVEHINSSDVVAEEETRLRSTPSPLVPPEKPPASTWFLTNVVDHRHAWCCLRDAGEKAGMRRVLKERPWGNPREPLEGGKEAAGSDVLKLMSFAAQYYLKNILDELAVVAYQRKGG---LSAELLSG-VESRLRD--PSVKDPKAELRQSLVPRLPSVRNLPRVILEKTEEAHRKECEEREERWDVELADTLTTAEEVRKRLIRRGTKKLPPGSFKWWEDMETRAKSGWLSKEQLAGSEFARRVAVKHGIGVVAALMKKKELASXXXXXXXXXXXXXXXXXXXXXXXDDPM-----------DVSDRAITGDSSSGGRSSKDSKGKAGNKRAPGTGLKRPLDPLASDDAVETVRNIRRRLVLGAPDHGDDDDDIGSGEGSTPPSEEQEASLEINNADLAELLRSTKPRGDPRKWARVLLRAQNSRKGVHA 819
BLAST of mRNA_F-serratus_M_contig87.20076.1 vs. uniprot
Match: D8LCB6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCB6_ECTSI) HSP 1 Score: 331 bits (849), Expect = 3.110e-100 Identity = 220/538 (40.89%), Postives = 290/538 (53.90%), Query Frame = 1
Query: 664 EVARGVKTPAHAHAYAHTPAHEVQVTPAKMPAYGATPAAHTTERKSLAGHPPPPLPPHAARTEEIQEKIPTQGAYNKRTKRTYTDDASILPALPSDNLEITKREVEPVPGLHVPSAEEQLLGNAPA-LTAAEEQMGKPWFATHVVNHRHAWCCLRDAAERDGMRQVLKERPWANPEDYSDGANQAVGSDVLQLMSLSAQLFLKDLMMSLKSIAWQSNGEQQRICWQVRTGRVESRLENFTDDTNSCQDELRRGLVPRLPPVSDMPRVLLKKEEQSHRNECQEREERWETDLKDKLKAAEELRKRLIRRGQRKLPTGGYKWWEDMEATAKSGWLSQEQQATSEFTRRVAVKHGIGVAASLLKRKQDQVHLSLSFDMLPKLALKRGGEE------DDVLGGASGGASAGPDLEPEATGASTQFADVSVEDIGAVASSV---GGNKRSLDAHQDESPIDIVRNIRRRLTCKPAADSSGPGG-----KESGAEAPGGRSAKKIQINNTHLADLLRTTKPRGDRHGWAKILFRAQNGRRGAHA 2232
+V R ++ AH A TP + Q P P +GA AA T+++ A P P P AY K D + L LP+D L+ K++VE + V + EE L + P+ L E+ WF T+VV+HRHAWCCLRDA ER GMR+VLKERPW NP + +G +A GSDVL+LMSL+AQ +LK+++ L +A+Q G + ++ +G VESRL + + ELR+ LVPRLP V D+PRV L++ E++HR EC+EREERW+ +L D L AEE+RKRLIRRG +KLP G +KWWEDME AKSGWLS+EQ A SEF RRVAVKHGIGV A+L+ DD + + + TG S+ S + G + G KR LD + ++ VRNIRRRL D + GA P ++INN LA+LLR+TKPRGD WA++LFRAQN R+G HA
Sbjct: 107 KVDRAKRSEAHKAAMKATPVYGGQA-PGAAPPHGAGAAAQFTQQQRAA--PQAPTAPXXXXXXXXXXXX-XXXAYTKPKVYNDVDPRTGLQKLPTDKLDSAKKQVEHINSSDVVAEEETRLRSTPSPLVPPEKPPASTWFLTNVVDHRHAWCCLRDAGERAGMRRVLKERPWGNPREPLEGGKEAAGSDVLKLMSLAAQYYLKNMLDELAVVAYQRKGG---LSAELLSG-VESRLRD--PSVKDPKAELRQSLVPRLPRVQDLPRVTLERTEEAHRKECEEREERWDVELADTLTTAEEVRKRLIRRGTKKLPPGSFKWWEDMETRAKSGWLSKEQLAGSEFARRVAVKHGIGVVAALMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXADDPMDVS----------DRPTTGDSSSXXXXSKDSNGKAGNKRTPGAGLKRPLDPLASDDAVETVRNIRRRLVLGAPDDGDXXXXXXXXXRGVGATPPSEEQEAGLEINNADLAELLRSTKPRGDPRKWARVLFRAQNSRKGVHA 624
BLAST of mRNA_F-serratus_M_contig87.20076.1 vs. uniprot
Match: D7FYX3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYX3_ECTSI) HSP 1 Score: 113 bits (283), Expect = 3.010e-22 Identity = 108/414 (26.09%), Postives = 166/414 (40.10%), Query Frame = 1
Query: 1039 ALTAAEEQMGKPWFATHVVNHRHAWCCLRDAAERDGMRQVLKERPWANPEDYSDGANQAVGSDVLQLMSLSAQLFLKDLMMSLKSIAWQSNGEQQRICWQVRTGRVESRLENFTDDTNSCQDELRRGLVPRLPPVS---------------------DMPRVLLKKEEQSHRNECQEREERWETDLKDKLKAAEELRKRLIRRGQRKLPTGGYKWWEDMEATAKSGWLSQEQQATSEFTRRVAVKHGIGVAASLLKRKQDQVHLSLSFDMLPKLALKRGGEEDDVLGGASGGASAGPDLEPEATGA---------STQFADVSVEDIGAVASSVGGNKRSLDAH-QDESPIDIVRNIRRRLTCKPAADSSGPGGKESGAEAPGGRSAKKIQINNTHLADLLRTTKPRGDRHGWA 2187
A AA + +PWFA +VV+HR AWC LR+A R G+R+VL+ RPW +P S G +A S VL+L+S + Q +LK ++ L +A+Q G Q +E R+E+ ++ L GLVPR P + PR +L++EE +HR C ERE WE + + + AA+ + R G+K + A + W +++ A + ++ ++ E D+ GG G D P G Q +++D S GN++S +DE +VR++RRR + PGG +I+INN L + LR P R WA
Sbjct: 357 AEAAARRREKQPWFARNVVDHRSAWCGLRNAGARAGLRKVLQPRPWGDPLAPSGGGQEAANSQVLELISAATQAYLKRVLTELSVVAYQRRGGLSEELLQG----LEERMEDPRSPGSALV--LYEGLVPRFPRYESGGSXXXXXXXXXXXXXXXXXEDPREVLRREEGAHRRSCLEREAGWEARVAEVMAAADGVAANEFARRV------GFKRGVGLSMPASAEWRRKKRMAEAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDQMEIE---ECDESRLSVDGG---GIDARPSVVGVRDEGVGERRKRQSTGNNMDD----QSDDDGNRKSRSGSGEDEQARALVRDVRRRFHRFGGTTPAAPGG--------------RIEINNADLTEHLRAVMPTCSRESWA 734
BLAST of mRNA_F-serratus_M_contig87.20076.1 vs. uniprot
Match: A0A6H5K4T0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4T0_9PHAE) HSP 1 Score: 108 bits (269), Expect = 1.510e-20 Identity = 84/252 (33.33%), Postives = 118/252 (46.83%), Query Frame = 1
Query: 1039 ALTAAEEQMGKPWFATHVVNHRHAWCCLRDAAERDGMRQVLKERPWANPEDYSDGANQAVGSDVLQLMSLSAQLFLKDLMMSLKSIAWQSNGEQQRICWQVRTGRVESRLENFTDDTNSCQDELRRGLVPRL---------------------PPVSDMPRVLLKKEEQSHRNECQEREERWETDLKDKLKAAEELRK-RLIRRGQRKLPTGGYKWWEDMEATAKSGWLSQEQQATSEFTRRVAVKHGIGVA 1728
A AA + +PWFA +VV+HR AWC LRDA R GMR+VL+ RPW + S G +A S VL+ +LK ++ L +A+Q G Q +E R+E+ ++ L GLVPR E++HR C +RE WE + + + AA RK R RR P+ E + A ++SGWLS+EQ A +EF RRV VK G+G++
Sbjct: 322 AEAAARWREKQPWFARNVVDHRSAWCGLRDAGARAGMRKVLQPRPWGDALAPSGGGQEAANSQVLEA-------YLKRVLTELSVVAYQRRGGLSEELLQG----LEERMEDPRSPGSALI--LYEGLVPRFRRYQPGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXEEAHRRSCLKREAGWEARVAEVMAAAHGGRKSRNKRRSLTNAPSRRV-GVESLSAWSESGWLSREQVAANEFARRVGVKRGVGLS 559 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig87.20076.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig87.20076.1 >prot_F-serratus_M_contig87.20076.1 ID=prot_F-serratus_M_contig87.20076.1|Name=mRNA_F-serratus_M_contig87.20076.1|organism=Fucus serratus male|type=polypeptide|length=752bp MNTNLVQKRASRTPMVYNTVVMSRLIRTQNALINAELETLGINISQLAPYback to top mRNA from alignment at F-serratus_M_contig87:839168..847620+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig87.20076.1 ID=mRNA_F-serratus_M_contig87.20076.1|Name=mRNA_F-serratus_M_contig87.20076.1|organism=Fucus serratus male|type=mRNA|length=8453bp|location=Sequence derived from alignment at F-serratus_M_contig87:839168..847620+ (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig87:839168..847620+ >mRNA_F-serratus_M_contig87.20076.1 ID=mRNA_F-serratus_M_contig87.20076.1|Name=mRNA_F-serratus_M_contig87.20076.1|organism=Fucus serratus male|type=CDS|length=4512bp|location=Sequence derived from alignment at F-serratus_M_contig87:839168..847620+ (Fucus serratus male)back to top |