mRNA_F-serratus_M_contig87.20075.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig87.20075.1 vs. uniprot
Match: A0A6H5KTJ7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTJ7_9PHAE) HSP 1 Score: 369 bits (947), Expect = 2.280e-112 Identity = 320/792 (40.40%), Postives = 418/792 (52.78%), Query Frame = 1
Query: 1 KRMNTNLVQKRASR-TPMVYNTVVMSRLIRTQNALINAELET-LGINISQLAPYVNVALELGKRADAAYAAVKERVSRAKQV----AASETATTSPAVKGAVGTGVAQEEQK-----------PEAAAPPLAPALSIPSIAPAAATANPTWLPAVGMTLSVFRVGWGVGVGCHRNVCACNEPLITKLHSSHQYALASQSDIWPISLAVALAPRVQPPATTPAPGSISAS---TPLAFSPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPAHEVQVTPAKMPAYGATPAAHTWAPEGTPXXXXXX--------------HAARTEEIQEKIPTQGAYNKRTKRTYTDDASILPALPSDNLEITKREVEPVPGLHVPSAEEQLLGNAPA-LTAAEEQMGKPWFATHVVNHRHAWCCLRDAAERDGMRQVLKERPWANPEDYSDGANQAVGSDVLQLMSLSAQLYLKDLMMSLKSIAWQRNGGATADMLAGVESRLENFTDDTNSCQDELRRGLVPRLPPVSDMPRVLLKKEEQSHRNECQEREERWEAELKDKLKAAEELRKRLIRRGQRKLPTGGYKWWEDMEATSKSGWLSQEQQATSEFTRRVAVKHGIGVAASLLKRKQDQVHLSLSFDMLPKLALKRGGEERRTMGGASGAASAGPDLEPEAV-GASTQFPDVSMEDLGAAASSVG---GNKRSLDPYQDESPIDVVRNIRRRLT--CKPAADLSGPQGMESGAEAPGGRSSKKIQINNTHLVDFLRSTKPRGDRRGCAKILFRAQNGRRGAHA 2253
KRMN L++ R+ T + YNT +MS+LI TQN +I ELE LG+N++ LAP++++ EL KR+D AY AVK +V RAK+ AA + A+ +P P+ A P P+ A P + V T+ + H V + + + Q +Q + P S+AVA T AP I AS TP+A + XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX + + TP AP XXXXXX HA AY K D + L LP+D L+ K++VE + V + EE L + P+ L E+ WF T+VV+HRHAWCCLRDA E+ GMR+VLKERPW NP + +G +A GSDVL+LMS +AQ YLK+++ L +A+QR GG +A++L+GVESRL + + ELR+ LVPRLP V ++PRV+L+K E++HR EC+EREERW+ EL D L AEE+RKRLIRRG +KLP G +KWWEDME +KSGWLS+EQ A SEF RRVAVKHGIGV A+L+K+K+ D+ A+ G S+ S + G A + G KR LDP + ++ VRNIRRRL D G G+ P ++INN L + LRSTKPRGD R A++L RAQN R+G HA
Sbjct: 53 KRMNVRLIELRSGNSTKIEYNTTIMSKLINTQNKIITDELEQKLGMNLTSLAPHLDLEGELKKRSDTAYLAVKNKVDRAKRSEAHKAAIKAASANPGXXXXXXXXXXXXXXXXXXXXXXXXXXPQVVAMPXXXXXXXPA-------AVPVKMEDVKPTVVTKPMAAPAAATSHHVVQQAHLAPQQQAVVAPQPVAPAQVKLPPTSVAVA--------GTASAPLVIGASPDSTPVAAAAPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVAQHSQTPVYGGQAPGAAXXXXXXXXXXXXRAAPQAPTAHAPAXXXXXXXXXXXPAYTKPKVYNDVDPRTGLQKLPTDKLDSAKKQVEHINSSDVVAEEETRLRSTPSPLVPPEKPPASTWFLTNVVDHRHAWCCLRDAGEKAGMRRVLKERPWGNPREPLEGGKEAAGSDVLKLMSFAAQYYLKNILDELAVVAYQRKGGLSAELLSGVESRLRD--PSVKDPKAELRQSLVPRLPSVRNLPRVILEKTEEAHRKECEEREERWDVELADTLTTAEEVRKRLIRRGTKKLPPGSFKWWEDMETRAKSGWLSKEQLAGSEFARRVAVKHGIGVVAALMKKKELASXXXXXXXXXXXXXXXXXXXXXXX--------DDPMDVSDRAITGDSSSGGRSSKDSKGKAGNKRAPGTGLKRPLDPLASDDAVETVRNIRRRLVLGAPDHGDDDDDIGSGEGSTPPSEEQEASLEINNADLAELLRSTKPRGDPRKWARVLLRAQNSRKGVHA 819
BLAST of mRNA_F-serratus_M_contig87.20075.1 vs. uniprot
Match: D8LCB6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCB6_ECTSI) HSP 1 Score: 350 bits (897), Expect = 3.280e-107 Identity = 207/458 (45.20%), Postives = 266/458 (58.08%), Query Frame = 1
Query: 916 AYNKRTKRTYTDDASILPALPSDNLEITKREVEPVPGLHVPSAEEQLLGNAPA-LTAAEEQMGKPWFATHVVNHRHAWCCLRDAAERDGMRQVLKERPWANPEDYSDGANQAVGSDVLQLMSLSAQLYLKDLMMSLKSIAWQRNGGATADMLAGVESRLENFTDDTNSCQDELRRGLVPRLPPVSDMPRVLLKKEEQSHRNECQEREERWEAELKDKLKAAEELRKRLIRRGQRKLPTGGYKWWEDMEATSKSGWLSQEQQATSEFTRRVAVKHGIGVAASLLKRKQDQVHLSLSFDMLPKLALKRGGEERRTMGGASGAASAGPDLEPE-AVGASTQFPDVSMEDLGAAASSV---GGNKRSLDPYQDESPIDVVRNIRRRLTCKPAAD-------LSGPQGMESGAEAPGGRSSKKIQINNTHLVDFLRSTKPRGDRRGCAKILFRAQNGRRGAHA 2253
AY K D + L LP+D L+ K++VE + V + EE L + P+ L E+ WF T+VV+HRHAWCCLRDA ER GMR+VLKERPW NP + +G +A GSDVL+LMSL+AQ YLK+++ L +A+QR GG +A++L+GVESRL + + ELR+ LVPRLP V D+PRV L++ E++HR EC+EREERW+ EL D L AEE+RKRLIRRG +KLP G +KWWEDME +KSGWLS+EQ A SEF RRVAVKHGIGV A+L+ A D+ G S+ S + G A + G KR LDP + ++ VRNIRRRL D +G+ GA P ++INN L + LRSTKPRGD R A++LFRAQN R+G HA
Sbjct: 176 AYTKPKVYNDVDPRTGLQKLPTDKLDSAKKQVEHINSSDVVAEEETRLRSTPSPLVPPEKPPASTWFLTNVVDHRHAWCCLRDAGERAGMRRVLKERPWGNPREPLEGGKEAAGSDVLKLMSLAAQYYLKNMLDELAVVAYQRKGGLSAELLSGVESRLRD--PSVKDPKAELRQSLVPRLPRVQDLPRVTLERTEEAHRKECEEREERWDVELADTLTTAEEVRKRLIRRGTKKLPPGSFKWWEDMETRAKSGWLSKEQLAGSEFARRVAVKHGIGVVAALMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-----ADDPMDVSDRPTTGDSSSXXXXSKDSNGKAGNKRTPGAGLKRPLDPLASDDAVETVRNIRRRLVLGAPDDGDXXXXXXXXXRGV--GATPPSEEQEAGLEINNADLAELLRSTKPRGDPRKWARVLFRAQNSRKGVHA 624
BLAST of mRNA_F-serratus_M_contig87.20075.1 vs. uniprot
Match: D7FYX3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYX3_ECTSI) HSP 1 Score: 132 bits (333), Expect = 2.430e-28 Identity = 114/406 (28.08%), Postives = 174/406 (42.86%), Query Frame = 1
Query: 1072 ALTAAEEQMGKPWFATHVVNHRHAWCCLRDAAERDGMRQVLKERPWANPEDYSDGANQAVGSDVLQLMSLSAQLYLKDLMMSLKSIAWQRNGGATADMLAGVESRLENFTDDTNSCQDELRRGLVPRLPPVS---------------------DMPRVLLKKEEQSHRNECQEREERWEAELKDKLKAAEELRKRLIRRGQRKLPTGGYKWWEDMEATSKSGWLSQEQQATSEFTRRVAVKHGIGVAASLLKRKQDQVHLSLSFDMLPKLALKRGGEERRTMGGASGAASAGPDLEPEAVGA---------STQFPDVSMEDLGAAASSVGGNKRSLDPY-QDESPIDVVRNIRRRLT----CKPAADLSGPQGMESGAEAPGGRSSKKIQINNTHLVDFLRSTKP 2184
A AA + +PWFA +VV+HR AWC LR+A R G+R+VL+ RPW +P S G +A S VL+L+S + Q YLK ++ L +A+QR GG + ++L G+E R+E+ ++ L GLVPR P + PR +L++EE +HR C ERE WEA + + + AA+ + R G+K + + + W +++ A + ++ ++ E R ++ G G D P VG Q +M+D S GN++S +DE +VR++RRR PAA PGGR I+INN L + LR+ P
Sbjct: 357 AEAAARRREKQPWFARNVVDHRSAWCGLRNAGARAGLRKVLQPRPWGDPLAPSGGGQEAANSQVLELISAATQAYLKRVLTELSVVAYQRRGGLSEELLQGLEERMEDPRSPGSALV--LYEGLVPRFPRYESGGSXXXXXXXXXXXXXXXXXEDPREVLRREEGAHRRSCLEREAGWEARVAEVMAAADGVAANEFAR------RVGFKRGVGLSMPASAEWRRKKRMAEAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDQMEIEECDESRLSVDGG------GIDARPSVVGVRDEGVGERRKRQSTGNNMDDQ----SDDDGNRKSRSGSGEDEQARALVRDVRRRFHRFGGTTPAA--------------PGGR----IEINNADLTEHLRAVMP 726
BLAST of mRNA_F-serratus_M_contig87.20075.1 vs. uniprot
Match: A0A6H5K4T0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4T0_9PHAE) HSP 1 Score: 130 bits (327), Expect = 1.340e-27 Identity = 90/248 (36.29%), Postives = 125/248 (50.40%), Query Frame = 1
Query: 1072 ALTAAEEQMGKPWFATHVVNHRHAWCCLRDAAERDGMRQVLKERPWANPEDYSDGANQAVGSDVLQLMSLSAQLYLKDLMMSLKSIAWQRNGGATADMLAGVESRLENFTDDTNSCQDELRRGLVPRL---------------------PPVSDMPRVLLKKEEQSHRNECQEREERWEAELKDKLKAAEELRK-RLIRRGQRKLPTGGYKWWEDMEATSKSGWLSQEQQATSEFTRRVAVKHGIGVA 1749
A AA + +PWFA +VV+HR AWC LRDA R GMR+VL+ RPW + S G +A S VL+ YLK ++ L +A+QR GG + ++L G+E R+E+ ++ L GLVPR E++HR C +RE WEA + + + AA RK R RR P+ E + A S+SGWLS+EQ A +EF RRV VK G+G++
Sbjct: 322 AEAAARWREKQPWFARNVVDHRSAWCGLRDAGARAGMRKVLQPRPWGDALAPSGGGQEAANSQVLEA-------YLKRVLTELSVVAYQRRGGLSEELLQGLEERMEDPRSPGSALI--LYEGLVPRFRRYQPGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXEEAHRRSCLKREAGWEARVAEVMAAAHGGRKSRNKRRSLTNAPSRRV-GVESLSAWSESGWLSREQVAANEFARRVGVKRGVGLS 559 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig87.20075.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig87.20075.1 >prot_F-serratus_M_contig87.20075.1 ID=prot_F-serratus_M_contig87.20075.1|Name=mRNA_F-serratus_M_contig87.20075.1|organism=Fucus serratus male|type=polypeptide|length=759bp MNTNLVQKRASRTPMVYNTVVMSRLIRTQNALINAELETLGINISQLAPYback to top mRNA from alignment at F-serratus_M_contig87:764211..772762- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig87.20075.1 ID=mRNA_F-serratus_M_contig87.20075.1|Name=mRNA_F-serratus_M_contig87.20075.1|organism=Fucus serratus male|type=mRNA|length=8552bp|location=Sequence derived from alignment at F-serratus_M_contig87:764211..772762- (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig87:764211..772762- >mRNA_F-serratus_M_contig87.20075.1 ID=mRNA_F-serratus_M_contig87.20075.1|Name=mRNA_F-serratus_M_contig87.20075.1|organism=Fucus serratus male|type=CDS|length=4554bp|location=Sequence derived from alignment at F-serratus_M_contig87:764211..772762- (Fucus serratus male)back to top |