mRNA_F-serratus_M_contig868.20039.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig868.20039.1
Unique NamemRNA_F-serratus_M_contig868.20039.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig868.20039.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig868contigF-serratus_M_contig868:227192..230786 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size474
Cds size471
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig868.20039.1prot_F-serratus_M_contig868.20039.1Fucus serratus malepolypeptideF-serratus_M_contig868 227192..230784 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932539.8631885-CDS-F-serratus_M_contig868:227191..2273571622932539.8631885-CDS-F-serratus_M_contig868:227191..227357Fucus serratus maleCDSF-serratus_M_contig868 227192..227357 +
1690964356.5391252-CDS-F-serratus_M_contig868:227191..2273571690964356.5391252-CDS-F-serratus_M_contig868:227191..227357Fucus serratus maleCDSF-serratus_M_contig868 227192..227357 +
1622932539.8758736-CDS-F-serratus_M_contig868:229766..2300051622932539.8758736-CDS-F-serratus_M_contig868:229766..230005Fucus serratus maleCDSF-serratus_M_contig868 229767..230005 +
1690964356.5488818-CDS-F-serratus_M_contig868:229766..2300051690964356.5488818-CDS-F-serratus_M_contig868:229766..230005Fucus serratus maleCDSF-serratus_M_contig868 229767..230005 +
1622932539.8915765-CDS-F-serratus_M_contig868:230718..2307841622932539.8915765-CDS-F-serratus_M_contig868:230718..230784Fucus serratus maleCDSF-serratus_M_contig868 230719..230784 +
1690964356.5583787-CDS-F-serratus_M_contig868:230718..2307841690964356.5583787-CDS-F-serratus_M_contig868:230718..230784Fucus serratus maleCDSF-serratus_M_contig868 230719..230784 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig868.20039.1

>prot_F-serratus_M_contig868.20039.1 ID=prot_F-serratus_M_contig868.20039.1|Name=mRNA_F-serratus_M_contig868.20039.1|organism=Fucus serratus male|type=polypeptide|length=157bp
ARLLRFGSTGALPDNRIGMDEGYWRHRPGSQRPFSGGTQAERRPLWESET
AEGYDGRGSGSISHGETPEEFRARAFSESYRNHAAAASSTSVASPSRARP
HRPIWFNIRSQGSKFTETGHSSSNNTNRRRRGVSEDCSFDNNGRGYDWGD
SWGRSNR
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mRNA from alignment at F-serratus_M_contig868:227192..230786+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig868.20039.1 ID=mRNA_F-serratus_M_contig868.20039.1|Name=mRNA_F-serratus_M_contig868.20039.1|organism=Fucus serratus male|type=mRNA|length=3595bp|location=Sequence derived from alignment at F-serratus_M_contig868:227192..230786+ (Fucus serratus male)
GCGCGCTTGCTAAGGTTTGGGTCCACGGGTGCTCTGCCGGACAATAGGAT
TGGTATGGACGAGGGATATTGGCGCCATCGCCCTGGAAGCCAAAGGCCTT
TTAGCGGCGGAACTCAGGCGGAGCGCCGGCCGCTGTGGGAATCGGAGACA
GCCGAGGGCTATGACGGTAAGCACTGACATCTATAAACCTGAGGGGAGCG
GGATTCATTCAAGGAAACAAAGGAAGGTGTACATGCACACAGTACGCACC
TGTATATATGTGTGTGTGTGTTCAGACCTACAGTATTATATACCGTTACT
TTTTTTTCAGCTTAGAGCTAGAGTACGCATGGTTGCCAATCCTGCTCATG
GTCAGCTGAAAAGGGAAAATTATATTTTCCCTTCCCCCGTTCGCGCTTGA
AACTTTGGTTTCTTGTGAGACGGATTCGGCGATATCGCGTCCCCCGTCAG
CCCGCTAATTCTCCACACTCGTAGCCGTGTCAGACTGAATCTGGTTCGTA
CCCACGGAAATCTTTCCGCTTGTCGCGACTGCGTCCATTTATATATACCG
TCAACCGACATTGGGTCAGTCCCAAGTTTATCGAGTCGCGCAACTGCGTA
CCGATGGCGTTCACTGCCGAGAGGCCGCCGGCGCAGGGCCAGTAGTTCTC
AAGGTACTTCCAGTATTAGTAACGGGTGCTGCCTTTCCGGGTTTCACCAT
GGACTATGACCAATTTATATGTAACTCTTTTTTTCACACCCTCTATCGGT
AAAACGCCTCAATCCGAAAGATACCGAACCGACACAGGTTTAGAGAGAGA
TTCCGTAAATATTTTTTTTCCGTCATACTACGCACGCACAAGGCATTGCT
TGCCTGTTgGGGGGGGGAGGGATTACTACAGCTGGTCAGCTGTGCCACCT
CATATATAACCATTTACAACTGCAGGACAATAAAGCTATGTACTGTACGC
TTCTGTAAGTTAGAAGCAACTTACGAAAGATTTGCGCGGAACAGTGATCT
CCGGGGACCTCCCCTCGCCACGCACTGCAGTATCCAGTATCTACAATAAT
GGCCGCAACTAACGTTTTTCATCGTTACTGAGGATTGAACCGCGAAAATC
CTTTGTAAGCAGCCATTCGTCGCCCGAGTGGTCTAGTAGGTAACCTGCAC
ACCTGCTAGTAGAGCGGAAGTCGTGAGTTCGATTCTTAGCTTAAGCAGAA
TTTGTGTTCTTTCTTTCGTAACGGAAAGCGTGGGAACGCGAGTAAGTAAA
TTTCAACCATTAGTGGACGAGTTGTAAGAGTGCTGAACTTGGATCGCGAT
AAAAATTGCAAGGCGTGAGCCGGGGAGAGATGGGAAGATCATTAGTGACC
ACAGGCAGGATGGTAATTAGAGGTCCATCGGCTATTAGAAGCGATAAACC
ACTAGACTACTGGGGCTGGCTTCTTTCTTGTCCGTTGTCTTCTATATGCT
TTTTCCCTGCTTATCtcggaaggTATTACAGGTTTTTGATATGGTTTGGT
TCCGTCTGTCTTAAGGTATTACAGGTTTTTGATATGGTTTGGTTCCGTCT
GTCTTGTGACCACGGCTGGATTCGTAGCGGATCAGTTAATGTGAGATAAA
CAACAACAACAAAACTGAGTCACGACGTGACTCAGTAGTCTAGTGGTTTA
TCGCTTCTAACTTACAAAAGATTTGAGCGGAACAGTGATCTCCGGGGACC
TCCCCTCGCCACGCACTGCAGTATCCAGTATCTACAATGGCTACAATGGC
CGCAACTAACATTTTCATCGTTACCGGAGAAGAAGCGCTGAACCACTCGA
CTACTGAGTCAAGTCATGACTCAGTAGTCTAGTGGTTTACCGCTTCTAAC
TTACAAATGATTTTCGCGGTTCAATCCCCGATAACGATGAAAAAGTTAGT
TGCGGCCATTGTAGCCATTGTAGATACTGCAGTGCGTGGCGAGGGGAGGT
CCCCGGAGATCACTGTTCCGCACAAATCTTTTGTAAGTTAGAAGCGCTAA
ACCACTAGACTGTATGGTCAGATACACTACTCAGTCATGACTCAGTAGTC
TAGTGGTTTATCGCTTCCAACTTACAGCTTCTTTTTTTTAAAGGGCTCAA
ATTCGTTTCTCGTCGTTTTTTTTATTTTCCGTTTTTTGTGTTGTTTTTGC
ATACAAGTTCTTAAAACCGTTTTTTTGTGTTTTTTTGTATAACCCAAATG
GTTTAAGAACGAGATAGAAAAAAAGAGTGGTGTGTATAGAGCTTTATATA
CATACAACAAGTATAGGGCCTCGTTCCGACACAAGAAAACATTAAAAAAA
AACATTGCCACTTCACAAGTACGTTCCAACTCTTCGGCTACGCTGGTGCG
AGTGAGAGATTTTATTTACAGGGTTTCGTATAGACGAAGAAGGCAGACCT
GGATCCCGATCGTCTTTATGTCTGAAGCTGTTGTTTTTTGTGTATTTTTA
CGGCGGGAAGGCGCGAACCCCATGGCGTTCCCCCGCTCGAGTCGAGTTTT
GTTTTGGACACCAATTAACCCCTCCCCCCCCCCGCCCTTTTTCCGTCCTT
TTTCCGTCATCACCACATGCGACAGGGAGGGGAAGTGGCTCGATCTCCCA
CGGGGAGACACCGGAAGAGTTTCGCGCGCGGGCTTTCAGCGAAAGCTACA
GGAATCACGCCGCCGCGGCGTCCTCCACGTCGGTAGCTTCTCCTTCGAGG
GCCAGACCCCATCGGCCAATCTGGTTTAATATTCGATCGCAAGGATCGAA
ATTCACGGAAACGGGTCACAGCAGCAGCAACAACACCAACAGGCGTCGCC
GCGGAGTCTCGGAGGTGTGTAGAACATACGGAGTATAAGTCACACGCCAA
TTTTTTCCTTCAATTTTGGGATTGATGCCGCTCGTACCGTTTCTTCTACG
CTATCGATGTCAGGCTTGAGTTTTTGTATGGTACGTAGGCGGTAGTGCAA
CACACATTCCATGGATATGTATCCCCCCCCCCCCCCCACGCCGCTCTTAT
TGGGCATTTTTAGTGGTCCTTTTGATTGGCCAAGCTCTCTTTGGAGGGAA
GGTCTCTTTTCATAACGTGCCTTTCGCCCGCAGCCCAGTTGCCGAGAGAA
ATTAGAAGGTGTTCGTCCATCGTATAACCCCGCGCGTGGACTTTTAAGCG
TGTGTGCCTTAAGGTTTGTGTTAATTTTGTGTGTCTGTGTCTGTATCGTG
TCATGTAGATGTGGGCGCCGCGCTTTCGCGAGCGCTTTCCCGTGAAAACG
AGACGCGCTTGTATTTTCCGCCGTCGATTAAAGTAACTGTTTCGTCATTT
TTTTTTCTCTCTGGTCATGGTTTAAAGCGGAACCCAAATGTATTTCGTTT
TTTTTTAACCAACGGTATTACGAACTTGTTTTTAGTGTTTTTGAAAAAGA
CAGTGTTATTCTGAATGTACTTTGTATAAAATATATACGTAAACGTATTT
GAAAACTACAATTCCAAGCTGACGTATTTGACGTGACCAACCACCGTGGG
CGGTTTTCCGCCGAAATTGTGGCGAAGGATTGCTCGTTCGACAACAACGG
CAGAGGATATGACTGGGGGGACAGTTGGGGGAGGTCCAATCGAAG
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Coding sequence (CDS) from alignment at F-serratus_M_contig868:227192..230786+

>mRNA_F-serratus_M_contig868.20039.1 ID=mRNA_F-serratus_M_contig868.20039.1|Name=mRNA_F-serratus_M_contig868.20039.1|organism=Fucus serratus male|type=CDS|length=942bp|location=Sequence derived from alignment at F-serratus_M_contig868:227192..230786+ (Fucus serratus male)
GCGCGCTTGCTAAGGTTTGGGTCCACGGGTGCTCTGCCGGACAATAGGAT
TGGTATGGACGAGGGATATTGGCGCCATCGCCCTGGAAGCCAAAGGCCTT
TTAGCGGCGGAACTCAGGCGGAGCGCCGGCCGCTGTGGGAATCGGAGACA
GCCGAGGGCTATGACGGCGCGCTTGCTAAGGTTTGGGTCCACGGGTGCTC
TGCCGGACAATAGGATTGGTATGGACGAGGGATATTGGCGCCATCGCCCT
GGAAGCCAAAGGCCTTTTAGCGGCGGAACTCAGGCGGAGCGCCGGCCGCT
GTGGGAATCGGAGACAGCCGAGGGCTATGACGGGAGGGGAAGTGGCTCGA
TCTCCCACGGGGAGACACCGGAAGAGTTTCGCGCGCGGGCTTTCAGCGAA
AGCTACAGGAATCACGCCGCCGCGGCGTCCTCCACGTCGGTAGCTTCTCC
TTCGAGGGCCAGACCCCATCGGCCAATCTGGTTTAATATTCGATCGCAAG
GATCGAAATTCACGGAAACGGGTCACAGCAGCAGCAACAACACCAACAGG
CGTCGCCGCGGAGTCTCGGAGGGAGGGGAAGTGGCTCGATCTCCCACGGG
GAGACACCGGAAGAGTTTCGCGCGCGGGCTTTCAGCGAAAGCTACAGGAA
TCACGCCGCCGCGGCGTCCTCCACGTCGGTAGCTTCTCCTTCGAGGGCCA
GACCCCATCGGCCAATCTGGTTTAATATTCGATCGCAAGGATCGAAATTC
ACGGAAACGGGTCACAGCAGCAGCAACAACACCAACAGGCGTCGCCGCGG
AGTCTCGGAGGATTGCTCGTTCGACAACAACGGCAGAGGATATGACTGGG
GGGACAGTTGGGGGAGGTCCAATCGAGATTGCTCGTTCGACAACAACGGC
AGAGGATATGACTGGGGGGACAGTTGGGGGAGGTCCAATCGA
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