mRNA_F-serratus_M_contig865.20021.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig865.20021.1
Unique NamemRNA_F-serratus_M_contig865.20021.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig865.20021.1 vs. uniprot
Match: A0A6H5K1H9_9PHAE (HTH psq-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1H9_9PHAE)

HSP 1 Score: 136 bits (343), Expect = 2.160e-36
Identity = 94/229 (41.05%), Postives = 133/229 (58.08%), Query Frame = 1
Query:    1 MPCAAGDLCQLPNEELIAPNGHECGHECRGGCGGRLHGLCGEVEDGSDTPTRRICHTCI-SKRSPSNSAK----RKEGQGFLQPDARKKKKTQES------GSRKRLSFEEKLEMIKLLDSKV-ARPEVARRFGCGITAIASVKREKVTLEDQEDIIDPS-DDEKELN------ESGDAESGGGRKVE-APPPYSDLSSCFGPLEQKAESAGNSEAAHFLRKAKMAFLA 627
            MPCAAG+LCQLP++  +AP+GH+C     GGCGGRLHGLCGE +  ++  T RIC  CI SK+  SN++     +++G      D  ++KKT+ +      GSR R+    K+E+++LLD     +  +A +F CG   + +VK E+  +E+Q      S    K L       ES D E+     +  APPPY+ LSS FG LE  AE +GN +AA  L+KAKMA +A
Sbjct:    1 MPCAAGELCQLPDQTPVAPHGHQC----HGGCGGRLHGLCGEQDQDAEYETARICFACIASKQKGSNASTAGKGKRKGSATESGDTARQKKTKPANHPDMTGSRTRMDIGTKMEILRLLDKGTRTQKSIAEQFNCGERTVRTVKAERAKIENQAAKTRSSATTRKNLRAMDFPEESSDDEASEEPSIHMAPPPYAALSSHFGALETAAEGSGNRDAAFHLQKAKMAMIA 225          
BLAST of mRNA_F-serratus_M_contig865.20021.1 vs. uniprot
Match: A0A6H5L4Y6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4Y6_9PHAE)

HSP 1 Score: 107 bits (267), Expect = 2.110e-24
Identity = 96/306 (31.37%), Postives = 134/306 (43.79%), Query Frame = 1
Query:    7 CAAGDLCQLPNEELIAPNGHECGHECRGGCGGRLHGLCGEVEDGSDTPTRRICHTCISKRSP----SNSAKRKEGQGFLQPDARKKKKTQESG---------SRKRLSFEEKLEMIKLLDSKVARPEVARRFGCGITAIASVK------------------------------------------------------------REKVT---LEDQEDIIDP-SDDEKEL------NESGDAES----------------GGGRKVEAPPPYSDLSSCFGPLEQKAESAGNSEAAHFLRKAKMAFLA 627
            CA  +LC+LPN  L    G + GHECR GCGGRLHG+CGE E+       R+C+ CI+K+      S   KR   +  L  D    KKT+ +G         +R RL+F ++LE++KLLD K    E+ARR+    +AI+ +K                                                            R+K+    LE+Q +  +  S+D KE+      N   + E+                      +APP +++L+  FGPLEQ AES G  +A HFLRKAKMAFLA
Sbjct:    4 CADQELCKLPNRPL----GEKDGHECRLGCGGRLHGICGEPEEEGGQEIHRVCNPCIAKKQKTPGSSKQPKRASPESELAGDGAAAKKTKPAGKAAGKAGKSTRTRLNFGQQLEVLKLLDEKTTYAEIARRYSISTSAISLIKGKRQQLEQAAATNARSTTSKSSRRGDFPELEKDVLALIEEARRVPLPITRATIESFGIAVRDKLAWAGLEEQPEFAETLSEDAKEIFMEKVNNTFKEDENISDXXXXXXXXXXXXXXXXXXXKAPPSFAELADFFGPLEQYAESCGIGDAGHFLRKAKMAFLA 305          
BLAST of mRNA_F-serratus_M_contig865.20021.1 vs. uniprot
Match: A0A6H5KNH6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNH6_9PHAE)

HSP 1 Score: 99.8 bits (247), Expect = 1.070e-20
Identity = 60/150 (40.00%), Postives = 85/150 (56.67%), Query Frame = 1
Query:    7 CAAGDLCQLPNEELIAPNGHECGHECRGGCGGRLHGLCGEVEDGSDTPTRRICHTCISKRSP----SNSAKRKEGQGFLQPDARKKKKTQESG---------SRKRLSFEEKLEMIKLLDSKVARPEVARRFGCGITAIASVKREKVTLE 417
            CA  +LC+LPN  L    G + GHECR GCGGRLHG+CGE E+       R+C+ CI+K+      S   KR   +  L  D    KKT+ +G         +R RL+F ++LE++KLLD K    E+ARR+    +AI+ +K ++  LE
Sbjct:    4 CADQELCKLPNRPL----GEKDGHECRLGCGGRLHGICGEPEEEGGQEIHRVCNPCIAKKQKTPGSSKQPKRASPESELAGDGAAAKKTKPAGKAAGKAGKSTRTRLNFGQQLEVLKLLDEKTTYAEIARRYSISTSAISLIKGKRQQLE 149          
BLAST of mRNA_F-serratus_M_contig865.20021.1 vs. uniprot
Match: A0A6H5JPZ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPZ6_9PHAE)

HSP 1 Score: 85.9 bits (211), Expect = 1.440e-17
Identity = 57/145 (39.31%), Postives = 75/145 (51.72%), Query Frame = 1
Query:    1 MPCAAGDLCQLPNEELIAPNGHECGHECRGGCGGRLHGLCGEVEDGSDTPTRRICHTCISKRSPSNSAKRKEGQGFLQPDARKKK-KTQESGSRK-----RLSFEEKLEMIKLLDSKVARPEVARRFGCGITAIASVKREKVTLE 417
            MPCA G+LCQL +     P+GH C    +GGCGGRLHG+CG V D  +    RIC  C++K     + KRK         A+ K+ K    GS K     R  F  K EM+KL+D KV   ++A RF C    +  VK+ +   E
Sbjct:    1 MPCAEGELCQLQDTTPQDPHGHGC----QGGCGGRLHGICGSVVDVGNE-NHRICSACVAK-----AGKRKVSAADSTGKAQSKRPKATNGGSNKSQPRARPDFSAKCEMLKLMDQKVTHEQLADRFKCSERLVRDVKKNRKKYE 135          
BLAST of mRNA_F-serratus_M_contig865.20021.1 vs. uniprot
Match: A0A6H5K3B1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3B1_9PHAE)

HSP 1 Score: 82.8 bits (203), Expect = 7.260e-17
Identity = 51/122 (41.80%), Postives = 68/122 (55.74%), Query Frame = 1
Query:    7 CAAGDLCQLPNEELIAPNGHECGHECRGGCGGRLHGLCGEVEDGSDTPTRRICHTCISKRSP----SNSAKRKEGQGFLQPDARKKKKTQESG---------SRKRLSFEEKLEMIKLLDSK 333
            CA   LC+LPN  L    G + GHECR GCGGRLHG+CGE E+       R+C+ CI+K+      S   KR   +  L  D    KKT+ +G         +R RL+F ++LE++KLLD K
Sbjct:    4 CADQQLCKLPNRPL----GEKDGHECRLGCGGRLHGICGEPEEEGGQEIHRVCNPCIAKKQKTPGSSKQPKRASPESELAGDGAAAKKTKPAGKAAGKAGKSTRTRLNFGQQLEVLKLLDEK 121          
BLAST of mRNA_F-serratus_M_contig865.20021.1 vs. uniprot
Match: A0A6H5JCH9_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCH9_9PHAE)

HSP 1 Score: 86.3 bits (212), Expect = 4.280e-16
Identity = 60/142 (42.25%), Postives = 80/142 (56.34%), Query Frame = 1
Query:    1 MPCAAGDLCQLPNEELIAPNGHECGHECRGGCGGRLHGLCGEVEDGSDTPTRRICHTCISKRSPSNSAKRKEGQGFLQPDARKKKKT---QESGSRKRLSFEEKLEMIKLLDSKVARPEVARRFGCGITAIASVKREKVTLE 417
            MPCA G+LC    ++    + H  GH C+GGCGGRLHG CG V D  D  T RIC TC++ R     A    G G   P  R+K K+   ++ G R R     KLE++KLLD+KVA+ + A RFGC      +VK ++  +E
Sbjct:    1 MPCAEGELCL--QQDRTPEDSH--GHVCQGGCGGRLHGNCGSVFD--DIETHRICSTCVT-RIGKRKAAAANGAG-AGPSKRQKDKSGGSKKGGVRARPDNNTKLEILKLLDAKVAQVQNAERFGCSERFGRTVKADRKKVE 134          
BLAST of mRNA_F-serratus_M_contig865.20021.1 vs. uniprot
Match: A0A6H5KME5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KME5_9PHAE)

HSP 1 Score: 77.4 bits (189), Expect = 4.310e-13
Identity = 43/120 (35.83%), Postives = 68/120 (56.67%), Query Frame = 1
Query:   73 GHECRGGCGGRLHGLCGEVEDGSDTPTRRICHTCISK----RSPS-NSAKRKEGQGFLQPDARKKKKTQESGSRKRLSFEEKLEMIKLLDSKVARPEVARRFGCGITAIASVKREKVTLE 417
            GH C+GGCGGRLHG CG +    D    RIC  C++K    ++P+ ++  R++ +  +     KK +    G R R   + KLEM++L+D+KV R ++A RF C +  +  VK+ +   E
Sbjct:  126 GHPCKGGCGGRLHGNCGSMF--GDNEQHRICSACVAKDGKHKAPAADTGGREQSKRPVTNGGSKKSQPSRKGPRARPDLDAKLEMLRLMDAKVTREQIADRFACSVRLVRDVKKNRQKYE 243          
BLAST of mRNA_F-serratus_M_contig865.20021.1 vs. uniprot
Match: A0A6H5JQT7_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQT7_9PHAE)

HSP 1 Score: 69.3 bits (168), Expect = 1.590e-12
Identity = 29/48 (60.42%), Postives = 38/48 (79.17%), Query Frame = 1
Query:    1 MPCAAGDLCQLPNEELIAPNGHECGHECRGGCGGRLHGLCGEVEDGSD 144
            MPCAAG+LCQLP++  +AP+GH+C     GGCGGRLHGLCGE +  ++
Sbjct:    1 MPCAAGELCQLPDQTPVAPHGHQC----HGGCGGRLHGLCGEQDQDAE 44          
BLAST of mRNA_F-serratus_M_contig865.20021.1 vs. uniprot
Match: A0A6H5JXS3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXS3_9PHAE)

HSP 1 Score: 53.5 bits (127), Expect = 1.450e-5
Identity = 27/40 (67.50%), Postives = 32/40 (80.00%), Query Frame = 1
Query:  508 APPPYSDLSSCFGPLEQKAESAGNSEAAHFLRKAKMAFLA 627
            APP +++L+  FGPLEQ AES G  +A HFLRKAKMAFLA
Sbjct:   98 APPSFAELADFFGPLEQYAESCGIGDAGHFLRKAKMAFLA 137          
BLAST of mRNA_F-serratus_M_contig865.20021.1 vs. uniprot
Match: A0A6H5KEK9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEK9_9PHAE)

HSP 1 Score: 53.5 bits (127), Expect = 7.640e-5
Identity = 27/40 (67.50%), Postives = 32/40 (80.00%), Query Frame = 1
Query:  508 APPPYSDLSSCFGPLEQKAESAGNSEAAHFLRKAKMAFLA 627
            APP +++L+  FGPLEQ AES G  +A HFLRKAKMAFLA
Sbjct:  585 APPSFAELADFFGPLEQYAESCGIGDAGHFLRKAKMAFLA 624          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig865.20021.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A6H5K1H9_9PHAE2.160e-3641.05HTH psq-type domain-containing protein n=2 Tax=Ect... [more]
A0A6H5L4Y6_9PHAE2.110e-2431.37Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KNH6_9PHAE1.070e-2040.00Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JPZ6_9PHAE1.440e-1739.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K3B1_9PHAE7.260e-1741.80Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JCH9_9PHAE4.280e-1642.25DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KME5_9PHAE4.310e-1335.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JQT7_9PHAE1.590e-1260.42Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JXS3_9PHAE1.450e-567.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KEK9_9PHAE7.640e-567.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig865contigF-serratus_M_contig865:139834..140529 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size629
Cds size627
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932536.1547778-CDS-F-serratus_M_contig865:139833..1402651622932536.1547778-CDS-F-serratus_M_contig865:139833..140265Fucus serratus maleCDSF-serratus_M_contig865 139834..140265 +
1690964354.805717-CDS-F-serratus_M_contig865:139833..1402651690964354.805717-CDS-F-serratus_M_contig865:139833..140265Fucus serratus maleCDSF-serratus_M_contig865 139834..140265 +
1622932536.187522-CDS-F-serratus_M_contig865:140334..1405291622932536.187522-CDS-F-serratus_M_contig865:140334..140529Fucus serratus maleCDSF-serratus_M_contig865 140335..140529 +
1690964354.8245685-CDS-F-serratus_M_contig865:140334..1405291690964354.8245685-CDS-F-serratus_M_contig865:140334..140529Fucus serratus maleCDSF-serratus_M_contig865 140335..140529 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig865.20021.1prot_F-serratus_M_contig865.20021.1Fucus serratus malepolypeptideF-serratus_M_contig865 139834..140529 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig865.20021.1

>prot_F-serratus_M_contig865.20021.1 ID=prot_F-serratus_M_contig865.20021.1|Name=mRNA_F-serratus_M_contig865.20021.1|organism=Fucus serratus male|type=polypeptide|length=209bp
MPCAAGDLCQLPNEELIAPNGHECGHECRGGCGGRLHGLCGEVEDGSDTP
TRRICHTCISKRSPSNSAKRKEGQGFLQPDARKKKKTQESGSRKRLSFEE
KLEMIKLLDSKVARPEVARRFGCGITAIASVKREKVTLEDQEDIIDPSDD
EKELNESGDAESGGGRKVEAPPPYSDLSSCFGPLEQKAESAGNSEAAHFL
RKAKMAFLA
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mRNA from alignment at F-serratus_M_contig865:139834..140529+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig865.20021.1 ID=mRNA_F-serratus_M_contig865.20021.1|Name=mRNA_F-serratus_M_contig865.20021.1|organism=Fucus serratus male|type=mRNA|length=696bp|location=Sequence derived from alignment at F-serratus_M_contig865:139834..140529+ (Fucus serratus male)
ATGCCATGCGCAGCTGGAGACCTGTGCCAACTCCCAAACGAGGAGTTGAT AGCTCCCAATGGACACGAGTGCGGACATGAGTGTCGTGGTGGGTGTGGTG GCCGCCTTCATGGCTTGTGTGGTGAGGTAGAAGATGGCAGCGACACTCCA ACTCGCCGCATCTGCCATACGTGTATCAGCAAGCGCAGCCCCTCCAACTC AGCCAAGCGCAAAGAGGGACAAGGGTTCCTACAACCAGACGCGCGTAAGA AGAAGAAAACTCAAGAGAGTGGGTCCCGCAAGCGGCTCAGTTTTGAGGAG AAACTTGAAATGATCAAGCTCTTAGACAGCAAGGTGGCCCGCCCCGAGGT AGCGCGTCGATTCGGGTGCGGAATTACTGCCATAGCATCGGTGAAGAGGG AGAAAGTCACCCTGGAGGACCAGGAAGATATCGCCGAGGCCCTGGCTGCA GATGCGAAGGATGCGCTCACGGAAAGGATGGCCGGTATCGTCGCGGAGGA GATCGACCCTTCCGACGACGAGAAAGAGCTGAACGAATCGGGAGATGCAG AAAGTGGGGGGGGTAGGAAGGTGGAGGCGCCGCCGCCTTACTCGGATCTG TCGTCGTGTTTTGGCCCTCTAGAGCAGAAGGCAGAGTCAGCTGGTAATAG TGAGGCAGCCCATTTCCTTCGCAAGGCAAAGATGGCGTTCCTTGCA
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Coding sequence (CDS) from alignment at F-serratus_M_contig865:139834..140529+

>mRNA_F-serratus_M_contig865.20021.1 ID=mRNA_F-serratus_M_contig865.20021.1|Name=mRNA_F-serratus_M_contig865.20021.1|organism=Fucus serratus male|type=CDS|length=1254bp|location=Sequence derived from alignment at F-serratus_M_contig865:139834..140529+ (Fucus serratus male)
ATGCCATGCGCAGCTGGAGACCTGTGCCAACTCCCAAACGAGGAGTTGAT
AGCTCCCAATGGACACGAGTGCGGACATGAGTGTCGTGGTGGGTGTGGTG
GCCGCCTTCATGGCTTGTGTGGTGAGGTAGAAGATGGCAGCGACACTCCA
ACTCGCCGCATCTGCCATACGTGTATCAGCAAGCGCAGCCCCTCCAACTC
AGCCAAGCGCAAAGAGGGACAAGGGTTCCTACAACCAGACGCGCGTAAGA
AGAAGAAAACTCAAGAGAGTGGGTCCCGCAAGCGGCTCAGTTTTGAGGAG
AAACTTGAAATGATCAAGCTCTTAGACAGCAAGGTGGCCCGCCCCGAGGT
AGCGCGTCGATTCGGGTGCGGAATTACTGCCATAGCATCGGTGAAGAGGG
AGAAAGTCACCCTGGAGGACCAGGAAGATATCATGCCATGCGCAGCTGGA
GACCTGTGCCAACTCCCAAACGAGGAGTTGATAGCTCCCAATGGACACGA
GTGCGGACATGAGTGTCGTGGTGGGTGTGGTGGCCGCCTTCATGGCTTGT
GTGGTGAGGTAGAAGATGGCAGCGACACTCCAACTCGCCGCATCTGCCAT
ACGTGTATCAGCAAGCGCAGCCCCTCCAACTCAGCCAAGCGCAAAGAGGG
ACAAGGGTTCCTACAACCAGACGCGCGTAAGAAGAAGAAAACTCAAGAGA
GTGGGTCCCGCAAGCGGCTCAGTTTTGAGGAGAAACTTGAAATGATCAAG
CTCTTAGACAGCAAGGTGGCCCGCCCCGAGGTAGCGCGTCGATTCGGGTG
CGGAATTACTGCCATAGCATCGGTGAAGAGGGAGAAAGTCACCCTGGAGG
ACCAGGAAGATATCATCGACCCTTCCGACGACGAGAAAGAGCTGAACGAA
TCGGGAGATGCAGAAAGTGGGGGGGGTAGGAAGGTGGAGGCGCCGCCGCC
TTACTCGGATCTGTCGTCGTGTTTTGGCCCTCTAGAGCAGAAGGCAGAGT
CAGCTGGTAATAGTGAGGCAGCCCATTTCCTTCGCAAGGCAAAGATGGCG
TTCCTTGCAATCGACCCTTCCGACGACGAGAAAGAGCTGAACGAATCGGG
AGATGCAGAAAGTGGGGGGGGTAGGAAGGTGGAGGCGCCGCCGCCTTACT
CGGATCTGTCGTCGTGTTTTGGCCCTCTAGAGCAGAAGGCAGAGTCAGCT
GGTAATAGTGAGGCAGCCCATTTCCTTCGCAAGGCAAAGATGGCGTTCCT
TGCA
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