mRNA_F-serratus_M_contig864.20014.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig864.20014.1
Unique NamemRNA_F-serratus_M_contig864.20014.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig864.20014.1 vs. uniprot
Match: A0A7S2BQB5_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2BQB5_9EUKA)

HSP 1 Score: 59.7 bits (143), Expect = 3.120e-7
Identity = 44/115 (38.26%), Postives = 61/115 (53.04%), Query Frame = 1 
Query:  541 ANVIVWCCGTTLSICEELKYRFWRVVRRVTGALTEGVVLPGAGAPEIACAASLEFHAQRLEIEN---SCSLDRSSII-------QLYTPMVL----------RAMAEALDEVRLL 825
            A++ V  CG T  +  E + RFW  ++R+  AL  G VLPGAGA E+ACAASLE  A  ++ E+   +  L R S +        L T ++L          RA+A AL E R+L
Sbjct:    2 ASISVLACGHTAGLALETERRFWNCLQRLRSALVCGKVLPGAGASELACAASLEQQAAMVDAEDDGLARLLGRESFLAVSAALQSLVTRVLLNTGSSPDNSHRAVAAALGEWRVL 116
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig864.20014.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S2BQB5_9EUKA3.120e-738.26Hypothetical protein (Fragment) n=1 Tax=Haptolina ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig864contigF-serratus_M_contig864:101536..104133 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons7
Model size1190
Cds size1188
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932533.883251-CDS-F-serratus_M_contig864:101537..1019231622932533.883251-CDS-F-serratus_M_contig864:101537..101923Fucus serratus maleCDSF-serratus_M_contig864 101538..101923 -
1690964353.5227077-CDS-F-serratus_M_contig864:101537..1019231690964353.5227077-CDS-F-serratus_M_contig864:101537..101923Fucus serratus maleCDSF-serratus_M_contig864 101538..101923 -
1622932533.8983808-CDS-F-serratus_M_contig864:102144..1022301622932533.8983808-CDS-F-serratus_M_contig864:102144..102230Fucus serratus maleCDSF-serratus_M_contig864 102145..102230 -
1690964353.5324616-CDS-F-serratus_M_contig864:102144..1022301690964353.5324616-CDS-F-serratus_M_contig864:102144..102230Fucus serratus maleCDSF-serratus_M_contig864 102145..102230 -
1622932533.9198053-CDS-F-serratus_M_contig864:102513..1026271622932533.9198053-CDS-F-serratus_M_contig864:102513..102627Fucus serratus maleCDSF-serratus_M_contig864 102514..102627 -
1690964353.5407376-CDS-F-serratus_M_contig864:102513..1026271690964353.5407376-CDS-F-serratus_M_contig864:102513..102627Fucus serratus maleCDSF-serratus_M_contig864 102514..102627 -
1622932533.94169-CDS-F-serratus_M_contig864:102919..1031911622932533.94169-CDS-F-serratus_M_contig864:102919..103191Fucus serratus maleCDSF-serratus_M_contig864 102920..103191 -
1690964353.548888-CDS-F-serratus_M_contig864:102919..1031911690964353.548888-CDS-F-serratus_M_contig864:102919..103191Fucus serratus maleCDSF-serratus_M_contig864 102920..103191 -
1622932533.9588459-CDS-F-serratus_M_contig864:103385..1035471622932533.9588459-CDS-F-serratus_M_contig864:103385..103547Fucus serratus maleCDSF-serratus_M_contig864 103386..103547 -
1690964353.5571513-CDS-F-serratus_M_contig864:103385..1035471690964353.5571513-CDS-F-serratus_M_contig864:103385..103547Fucus serratus maleCDSF-serratus_M_contig864 103386..103547 -
1622932533.9714737-CDS-F-serratus_M_contig864:103778..1038961622932533.9714737-CDS-F-serratus_M_contig864:103778..103896Fucus serratus maleCDSF-serratus_M_contig864 103779..103896 -
1690964353.5652657-CDS-F-serratus_M_contig864:103778..1038961690964353.5652657-CDS-F-serratus_M_contig864:103778..103896Fucus serratus maleCDSF-serratus_M_contig864 103779..103896 -
1622932533.9874032-CDS-F-serratus_M_contig864:104083..1041331622932533.9874032-CDS-F-serratus_M_contig864:104083..104133Fucus serratus maleCDSF-serratus_M_contig864 104084..104133 -
1690964353.57391-CDS-F-serratus_M_contig864:104083..1041331690964353.57391-CDS-F-serratus_M_contig864:104083..104133Fucus serratus maleCDSF-serratus_M_contig864 104084..104133 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig864.20014.1prot_F-serratus_M_contig864.20014.1Fucus serratus malepolypeptideF-serratus_M_contig864 101538..104133 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig864.20014.1

>prot_F-serratus_M_contig864.20014.1 ID=prot_F-serratus_M_contig864.20014.1|Name=mRNA_F-serratus_M_contig864.20014.1|organism=Fucus serratus male|type=polypeptide|length=396bp
QTPTTQIFRSAEALASRSVNDNSESGLWAENVSLNLERFGVDMLLATGDV
CSSLRQLLALRGVVVLSGCLQEEVEAAASATGATPVPTIDVLTRDDVGTG
RDRNRGLQFEERQHESCARRFEGLAASILDVGVVSEERNVFVGEVGKQMG
SGLEVSDVVLMLYHPTLNNIGNIEKWSGAEANVIVWCCGTTLSICEELKY
RFWRVVRRVTGALTEGVVLPGAGAPEIACAASLEFHAQRLEIENSCSLDR
SSIIQLYTPMVLRAMAEALDEVRLLCTMNAGQVIHEASRQLSAAKNAAAQ
HLSRHQSQTAMSSRLPMESDSSRLRRCCPDWSSSLELAAVSLSAINGDST
VGTVLECDGSSKSGERSLDDNDSSPGHYRYEEAIVLDNYGARIGCL
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mRNA from alignment at F-serratus_M_contig864:101536..104133-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig864.20014.1 ID=mRNA_F-serratus_M_contig864.20014.1|Name=mRNA_F-serratus_M_contig864.20014.1|organism=Fucus serratus male|type=mRNA|length=2598bp|location=Sequence derived from alignment at F-serratus_M_contig864:101536..104133- (Fucus serratus male)
CAGACCCCGACCACTCAAATCTTCCGGAGCGCCGAGGCGCTGGCAAGCCG
GTAAGACGAACGACACACCACACACGCACGTGGAGACGGATTTCTCCCCC
TTACTGGAGGGGCTTTTGGTTTGCAACGCTTAAACGCGATTATTAAAAGC
GGCAATTTCAAGCACGGATCGCATTGCTTGCGAGACGACGATGAGTCAAA
CTGCCCGACTCTTCTGCTTTGAACCCTCTTCCGGTAGATCGGTCAACGAC
AACAGCGAGAGTGGTCTTTGGGCGGAAAACGTTTCGCTCAATCTTGAAAG
GTTTGGAGTTGACATGCTCCTGGCAACTGGAGACGTGTGCTCCTCTCTCC
GCCAGGTGTTTGACGAGTACTGGTTCCGCTTGTGTAGCGGAGATGAAGAA
ATGAAACAATTTGCCATCTTCAGTACCACGTGCTTGTTAGTCCCACCCGC
CAAAAACAATCCGCTCACCTCCACCAACACCCATTTTCTGCGTCTCCAGC
AGCAGTCGTATGTGTCGCAGATACTCATTCGCATCGAGGCTTGTACTTGA
CACTCCTGGTACGTGGACCGTGCCAATGTTGTGCAGTTACTAGCTCTCCG
AGGCGTTGTGGTGCTCTCAGGATGCCTGCAGGAAGAAGTGGAGGCAGCGG
CATCGGCCACCGGCGCTACCCCAGTACCGACAATCGACGTGTTGACGAGA
GACGATGTCGGTACAGGAAGGGATAGGAACAGAGGGCTCCAATTCGAGGT
TCGTGTGAGATGTAGACAATGTTAACACCCTCCCGAATATTTCACTATAG
ATAAAAAGCAGTAAGAACTAGTCGATGACAATCATTGCCGGGCACTGTCG
AATTGAAACGACAACTAAGAATGCACCAGCTGTGCGCTTACGGCACAGAA
GAAGTGCTCATCATACAATAAGTGGTTGGTTGATATCGACAGGAGCGGCA
ACACGAGTCATGCGCTCGCCGATTTGAGGGCTTGGCGGCGTCTATCCTTG
ATGTGGGAGTTGTCAGTGAAGAGCGGAATGTGTTCGTGGGCGAGGTCGGG
AAACAGATGGGGTCGGGACTGGAAGTATCGGACGTGGTGCTCATGTTGTA
CCATCCCACGCTAAATAATATTGGCAACATCGAAAAATGGAGTGGAGCAG
AGGCGAATGTCATTGTGTGGTGTTGTGGAACCACGCTAAGCATCTGCGAG
GAGCTGAAATACAGGTGGGTGCGACACGCGAAGCGCCATGATATCGAACC
CTTCAGTCGCAGCCCGCTCGCATCTCTTTCTTCGCTGGACCTGTCGCGCT
GCAACGTACGGCGACTCGTGCTCGTACTCGTCATGGATTTTCGGTCGATA
GCAAAAAACGTGCGAGTCAAATTCGATGCCTTAAGGCTGTCTTCCCCATG
GGACTCCCGGTTTTCCGAAAAATCTCCCGTGCTCATGCACTTTGTGAAAC
CTTCCGCCTTCGGGTGATGCTGCGTTGTGTGATGTTCTTTCCGTACCTAC
TTGTAGGTTCTGGAGGGTAGTGAGGCGAGTAACTGGTGCTCTAACAGAAG
GAGTTGTGCTCCCCGGAGCAGGTGCGCCAGAAATAGCGTGTGCGGCAAGC
CTCGAGTTCCACGCCCAGAGGTGAAGCTACGGAACGGTGCGTTCTGGCTC
GTGCGAGTTCATGATTGAAGAGTATTTCGACAGTATGAGATACATTTCTT
CCATGACTCACGCATTGTTTTCACAAGCAAAAGAAACTTGATGCTTGGCA
TTCGGGGAAATATCACGACCGTAATACCTCCACGGGGTACTTAGACTAGT
TTCCAAAACTCGTCCAGTAGGCTTGTGTACTACGCTTGAAAAAGGGAGGC
ATATAGAGTATCATGCGATCGACATCTGAACTTCGTCAACTTTTCATCCA
CAGGTTGGAAATCGAGAACTCGTGCAGCCTCGACCGTTCATCAATCATTC
AGCTTTACACCCCGATGGTGCTGCGGGCGATGGCAGAAGGTTTGACCAGT
TTTTGTGGCTAGCATTTTGAGCATGATACAACGAGCGGCTCATCGAAGAC
AATTGATAGTAATATGTTTTAGCGTACGAGTAGGATGTATCGACGTGAGT
TGCAAGTAATTGAACTTCAGAAAAATGCAAAAGTATCTCGGGATATAGCT
GCCGCTCTTTTATGCTTAGTATTCCCTTTCACTTGACCCCATCGCACACG
TTTTGACCAGCACTGGACGAAGTGCGTTTGCTGTGCACAATGAACGCCGG
CCAAGTAATTCATGAAGCCTCTCGTCAATTGTCAGCCGCCAAAAATGCGG
CAGCGCAACACCTATCGAGACACCAGAGTCAAACCGCCATGTCTAGTCGA
TTACCCATGGAAAGTGATTCTTCTAGACTCAGGAGGTGCTGCCCCGATTG
GAGCTCAAGCCTGGAGCTGGCAGCGGTGTCTCTGTCTGCCATCAATGGTG
ATAGTACAGTAGGGACTGTCTTGGAGTGTGATGGCAGCAGTAAGTCGGGC
GAACGATCACTGGATGACAACGATTCTTCTCCTGGACATTATCGATACGA
AGAGGCAATCGTGCTTGACAACTACGGTGCAAGAATCGGGTGCTTGGA
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Coding sequence (CDS) from alignment at F-serratus_M_contig864:101536..104133-

>mRNA_F-serratus_M_contig864.20014.1 ID=mRNA_F-serratus_M_contig864.20014.1|Name=mRNA_F-serratus_M_contig864.20014.1|organism=Fucus serratus male|type=CDS|length=2376bp|location=Sequence derived from alignment at F-serratus_M_contig864:101536..104133- (Fucus serratus male)
CAGACCCCGACCACTCAAATCTTCCGGAGCGCCGAGGCGCTGGCAAGCCG
CAGACCCCGACCACTCAAATCTTCCGGAGCGCCGAGGCGCTGGCAAGCCG
ATCGGTCAACGACAACAGCGAGAGTGGTCTTTGGGCGGAAAACGTTTCGC
TCAATCTTGAAAGGTTTGGAGTTGACATGCTCCTGGCAACTGGAGACGTG
TGCTCCTCTCTCCGCCAGATCGGTCAACGACAACAGCGAGAGTGGTCTTT
GGGCGGAAAACGTTTCGCTCAATCTTGAAAGGTTTGGAGTTGACATGCTC
CTGGCAACTGGAGACGTGTGCTCCTCTCTCCGCCAGTTACTAGCTCTCCG
AGGCGTTGTGGTGCTCTCAGGATGCCTGCAGGAAGAAGTGGAGGCAGCGG
CATCGGCCACCGGCGCTACCCCAGTACCGACAATCGACGTGTTGACGAGA
GACGATGTCGGTACAGGAAGGGATAGGAACAGAGGGCTCCAATTCGAGTT
ACTAGCTCTCCGAGGCGTTGTGGTGCTCTCAGGATGCCTGCAGGAAGAAG
TGGAGGCAGCGGCATCGGCCACCGGCGCTACCCCAGTACCGACAATCGAC
GTGTTGACGAGAGACGATGTCGGTACAGGAAGGGATAGGAACAGAGGGCT
CCAATTCGAGGAGCGGCAACACGAGTCATGCGCTCGCCGATTTGAGGGCT
TGGCGGCGTCTATCCTTGATGTGGGAGTTGTCAGTGAAGAGCGGAATGTG
TTCGTGGGCGAGGTCGGGAAACAGATGGGGTCGGGACTGGAAGTATCGGA
CGTGGTGCTCATGTTGTACCATCCCACGCTAAATAATATTGGCAACATCG
AAAAATGGAGTGGAGCAGAGGCGAATGTCATTGTGTGGTGTTGTGGAACC
ACGCTAAGCATCTGCGAGGAGCTGAAATACAGGAGCGGCAACACGAGTCA
TGCGCTCGCCGATTTGAGGGCTTGGCGGCGTCTATCCTTGATGTGGGAGT
TGTCAGTGAAGAGCGGAATGTGTTCGTGGGCGAGGTCGGGAAACAGATGG
GGTCGGGACTGGAAGTATCGGACGTGGTGCTCATGTTGTACCATCCCACG
CTAAATAATATTGGCAACATCGAAAAATGGAGTGGAGCAGAGGCGAATGT
CATTGTGTGGTGTTGTGGAACCACGCTAAGCATCTGCGAGGAGCTGAAAT
ACAGGTTCTGGAGGGTAGTGAGGCGAGTAACTGGTGCTCTAACAGAAGGA
GTTGTGCTCCCCGGAGCAGGTGCGCCAGAAATAGCGTGTGCGGCAAGCCT
CGAGTTCCACGCCCAGAGGTTCTGGAGGGTAGTGAGGCGAGTAACTGGTG
CTCTAACAGAAGGAGTTGTGCTCCCCGGAGCAGGTGCGCCAGAAATAGCG
TGTGCGGCAAGCCTCGAGTTCCACGCCCAGAGGTTGGAAATCGAGAACTC
GTGCAGCCTCGACCGTTCATCAATCATTCAGCTTTACACCCCGATGGTGC
TGCGGGCGATGGCAGAAGGTTGGAAATCGAGAACTCGTGCAGCCTCGACC
GTTCATCAATCATTCAGCTTTACACCCCGATGGTGCTGCGGGCGATGGCA
GAAGCACTGGACGAAGTGCGTTTGCTGTGCACAATGAACGCCGGCCAAGT
AATTCATGAAGCCTCTCGTCAATTGTCAGCCGCCAAAAATGCGGCAGCGC
AACACCTATCGAGACACCAGAGTCAAACCGCCATGTCTAGTCGATTACCC
ATGGAAAGTGATTCTTCTAGACTCAGGAGGTGCTGCCCCGATTGGAGCTC
AAGCCTGGAGCTGGCAGCGGTGTCTCTGTCTGCCATCAATGGTGATAGTA
CAGTAGGGACTGTCTTGGAGTGTGATGGCAGCAGTAAGTCGGGCGAACGA
TCACTGGATGACAACGATTCTTCTCCTGGACATTATCGATACGAAGAGGC
AATCGTGCTTGACAACTACGGTGCAAGAATCGGGTGCTTGCACTGGACGA
AGTGCGTTTGCTGTGCACAATGAACGCCGGCCAAGTAATTCATGAAGCCT
CTCGTCAATTGTCAGCCGCCAAAAATGCGGCAGCGCAACACCTATCGAGA
CACCAGAGTCAAACCGCCATGTCTAGTCGATTACCCATGGAAAGTGATTC
TTCTAGACTCAGGAGGTGCTGCCCCGATTGGAGCTCAAGCCTGGAGCTGG
CAGCGGTGTCTCTGTCTGCCATCAATGGTGATAGTACAGTAGGGACTGTC
TTGGAGTGTGATGGCAGCAGTAAGTCGGGCGAACGATCACTGGATGACAA
CGATTCTTCTCCTGGACATTATCGATACGAAGAGGCAATCGTGCTTGACA
ACTACGGTGCAAGAATCGGGTGCTTG
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