mRNA_F-serratus_M_contig8619.20004.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig8619.20004.1
Unique NamemRNA_F-serratus_M_contig8619.20004.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig8619.20004.1 vs. uniprot
Match: A0A6H5JPB8_9PHAE (CCHC-type domain-containing protein n=7 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPB8_9PHAE)

HSP 1 Score: 53.5 bits (127), Expect = 1.800e-5
Identity = 35/128 (27.34%), Postives = 60/128 (46.88%), Query Frame = 1 
Query:   10 RHLRAWVYFSQAFTIKTDVGRFRRSNSPGKFWEETVKWYGARTVGQQTVLRKRLHNFQIGKGCNPIEKLHEIEDICEEMRDAKMTVDDQTVYSIYVSALPSEYDLEIRELGRKQVFDRDEIMNLVQAQ 393
            R L+A+ + S A   + D   F R  +P +  +E  K +   +      L  +  NF +    NP E L  +E +   + +  + V+   V S+++SALP+EYD     L      DR E++ +V +Q
Sbjct:  203 RSLQAFHFLSSALVREPDKAVFGRCVTPKQALDELDKVHNPESQVATQELLSKFQNFAMPADKNPTESLIAMEQLASRLNERGVRVEASYVLSLFLSALPAEYDHAKLTLQSAPTLDRGEVIRVVGSQ 330
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig8619.20004.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JPB8_9PHAE1.800e-527.34CCHC-type domain-containing protein n=7 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig8619contigF-serratus_M_contig8619:4082..4522 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size441
Cds size441
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932532.9544554-CDS-F-serratus_M_contig8619:4081..45221622932532.9544554-CDS-F-serratus_M_contig8619:4081..4522Fucus serratus maleCDSF-serratus_M_contig8619 4082..4522 -
1690964353.12432-CDS-F-serratus_M_contig8619:4081..45221690964353.12432-CDS-F-serratus_M_contig8619:4081..4522Fucus serratus maleCDSF-serratus_M_contig8619 4082..4522 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig8619.20004.1prot_F-serratus_M_contig8619.20004.1Fucus serratus malepolypeptideF-serratus_M_contig8619 4082..4522 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig8619.20004.1

>prot_F-serratus_M_contig8619.20004.1 ID=prot_F-serratus_M_contig8619.20004.1|Name=mRNA_F-serratus_M_contig8619.20004.1|organism=Fucus serratus male|type=polypeptide|length=147bp
MYERHLRAWVYFSQAFTIKTDVGRFRRSNSPGKFWEETVKWYGARTVGQQ
TVLRKRLHNFQIGKGCNPIEKLHEIEDICEEMRDAKMTVDDQTVYSIYVS
ALPSEYDLEIRELGRKQVFDRDEIMNLVQAQFELLSKKKKSSSSAHA
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mRNA from alignment at F-serratus_M_contig8619:4082..4522-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig8619.20004.1 ID=mRNA_F-serratus_M_contig8619.20004.1|Name=mRNA_F-serratus_M_contig8619.20004.1|organism=Fucus serratus male|type=mRNA|length=441bp|location=Sequence derived from alignment at F-serratus_M_contig8619:4082..4522- (Fucus serratus male)
ATGTATGAGAGGCATTTGAGGGCGTGGGTTTACTTCTCCCAGGCTTTCAC
AATCAAGACAGATGTGGGCCGCTTCCGTAGAAGCAACTCGCCGGGGAAAT
TTTGGGAGGAGACCGTAAAATGGTACGGTGCTCGAACCGTCGGCCAGCAA
ACTGTGCTGAGAAAAAGGTTGCACAACTTTCAGATAGGGAAAGGCTGCAA
CCCCATAGAGAAACTGCACGAGATCGAAGACATATGCGAAGAAATGCGGG
ATGCTAAGATGACTGTCGATGATCAAACAGTTTATAGTATCTACGTCTCT
GCCCTTCCCTCCGAGTACGACCTCGAAATCCGAGAGTTGGGTCGGAAGCA
GGTTTTCGATCGTGATGAGATCATGAACCTAGTGCAGGCGCAGTTCGAGC
TCCTTAGTAAGAAGAAGAAGAGTTCGTCGTCGGCCCATGCG
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Coding sequence (CDS) from alignment at F-serratus_M_contig8619:4082..4522-

>mRNA_F-serratus_M_contig8619.20004.1 ID=mRNA_F-serratus_M_contig8619.20004.1|Name=mRNA_F-serratus_M_contig8619.20004.1|organism=Fucus serratus male|type=CDS|length=882bp|location=Sequence derived from alignment at F-serratus_M_contig8619:4082..4522- (Fucus serratus male)
ATGTATGAGAGGCATTTGAGGGCGTGGGTTTACTTCTCCCAGGCTTTCAC
AATCAAGACAGATGTGGGCCGCTTCCGTAGAAGCAACTCGCCGGGGAAAT
TTTGGGAGGAGACCGTAAAATGGTACGGTGCTCGAACCGTCGGCCAGCAA
ACTGTGCTGAGAAAAAGGTTGCACAACTTTCAGATAGGGAAAGGCTGCAA
CCCCATAGAGAAACTGCACGAGATCGAAGACATATGCGAAGAAATGCGGG
ATGCTAAGATGACTGTCGATGATCAAACAGTTTATAGTATCTACGTCTCT
GCCCTTCCCTCCGAGTACGACCTCGAAATCCGAGAGTTGGGTCGGAAGCA
GGTTTTCGATCGTGATGAGATCATGAACCTAGTGCAGGCGCAGTTCGAGC
TCCTTAGTAAGAAGAAGAAGAGTTCGTCGTCGGCCCATGCGATGTATGAG
AGGCATTTGAGGGCGTGGGTTTACTTCTCCCAGGCTTTCACAATCAAGAC
AGATGTGGGCCGCTTCCGTAGAAGCAACTCGCCGGGGAAATTTTGGGAGG
AGACCGTAAAATGGTACGGTGCTCGAACCGTCGGCCAGCAAACTGTGCTG
AGAAAAAGGTTGCACAACTTTCAGATAGGGAAAGGCTGCAACCCCATAGA
GAAACTGCACGAGATCGAAGACATATGCGAAGAAATGCGGGATGCTAAGA
TGACTGTCGATGATCAAACAGTTTATAGTATCTACGTCTCTGCCCTTCCC
TCCGAGTACGACCTCGAAATCCGAGAGTTGGGTCGGAAGCAGGTTTTCGA
TCGTGATGAGATCATGAACCTAGTGCAGGCGCAGTTCGAGCTCCTTAGTA
AGAAGAAGAAGAGTTCGTCGTCGGCCCATGCG
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