mRNA_F-serratus_M_contig860.19999.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig860.19999.1
Unique NamemRNA_F-serratus_M_contig860.19999.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig860.19999.1 vs. uniprot
Match: A0A6H5KSI8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSI8_9PHAE)

HSP 1 Score: 100 bits (250), Expect = 2.380e-23
Identity = 48/69 (69.57%), Postives = 55/69 (79.71%), Query Frame = 1
Query:    1 LDEVFPFVNTDVVHNLELEKPDYNIAASNADAGHDLWSFWHDNRLKLPFWYNVAKDVALIQPSSASMER 207
            L EVFPFV T +VH L +EK  Y+ AA+  D+G DLW+FWHDNR +LP WYNVAKDVALIQPSSA MER
Sbjct:  409 LAEVFPFVTTAMVHELVVEKDLYSTAAAGTDSGCDLWAFWHDNRPELPAWYNVAKDVALIQPSSAFMER 477          
BLAST of mRNA_F-serratus_M_contig860.19999.1 vs. uniprot
Match: A0A6H5JW81_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW81_9PHAE)

HSP 1 Score: 96.3 bits (238), Expect = 6.130e-22
Identity = 48/69 (69.57%), Postives = 51/69 (73.91%), Query Frame = 1
Query:    1 LDEVFPFVNTDVVHNLELEKPDYNIAASNADAGHDLWSFWHDNRLKLPFWYNVAKDVALIQPSSASMER 207
            L EV PFV   VV  L  E   YN+AA+  DAG DLW+FWHDNRLKL  WYNVAKDVALIQPSSA MER
Sbjct:  300 LPEVLPFVTPTVVAALVEEMDAYNVAAAETDAGCDLWAFWHDNRLKLSAWYNVAKDVALIQPSSAFMER 368          
BLAST of mRNA_F-serratus_M_contig860.19999.1 vs. uniprot
Match: A0A6H5KPF8_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPF8_9PHAE)

HSP 1 Score: 93.2 bits (230), Expect = 6.740e-21
Identity = 46/69 (66.67%), Postives = 50/69 (72.46%), Query Frame = 1
Query:    1 LDEVFPFVNTDVVHNLELEKPDYNIAASNADAGHDLWSFWHDNRLKLPFWYNVAKDVALIQPSSASMER 207
            L EV PFV   VV  L  E   YN+AA+  DAG DLW+FWHDNRLKL  WY VAKD+ALIQPSSA MER
Sbjct:   51 LAEVLPFVTPTVVAALVEEMDAYNVAAAETDAGCDLWAFWHDNRLKLSAWYKVAKDIALIQPSSAFMER 119          
BLAST of mRNA_F-serratus_M_contig860.19999.1 vs. uniprot
Match: A0A6H5JIR3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIR3_9PHAE)

HSP 1 Score: 85.9 bits (211), Expect = 5.580e-18
Identity = 42/67 (62.69%), Postives = 48/67 (71.64%), Query Frame = 1
Query:   13 FPFVNTDVVHNLELEKPDYNIAASNADAGHDLWSFWHDNRLK--LPFWYNVAKDVALIQPSSASMER 207
            FPFV  + V  L+ +  DYNIAAS  D G+DLWSFWHDNR K  L  WY VAKD+ L+QPSSA MER
Sbjct:  656 FPFVTENDVARLKDQMDDYNIAASGVDTGYDLWSFWHDNRHKSSLCHWYGVAKDIVLLQPSSAFMER 722          
BLAST of mRNA_F-serratus_M_contig860.19999.1 vs. uniprot
Match: A0A6H5K1T8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1T8_9PHAE)

HSP 1 Score: 76.6 bits (187), Expect = 3.430e-16
Identity = 39/67 (58.21%), Postives = 48/67 (71.64%), Query Frame = 1
Query:   13 FPFVNTDVVHNLELEKPDYNIAASNADAGHDLWSFWHDNRLK--LPFWYNVAKDVALIQPSSASMER 207
            FPFV+ D    L+ +  D NIAAS  D G++LW+FWHD+R K  L  WY VAKD+AL+QPSSA MER
Sbjct:   66 FPFVSEDFAR-LKDQMVDCNIAASEVDTGYNLWAFWHDSRRKRNLSQWYQVAKDIALLQPSSAFMER 131          
BLAST of mRNA_F-serratus_M_contig860.19999.1 vs. uniprot
Match: A0A6H5K4E0_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4E0_9PHAE)

HSP 1 Score: 76.6 bits (187), Expect = 8.430e-16
Identity = 34/66 (51.52%), Postives = 44/66 (66.67%), Query Frame = 1
Query:   10 VFPFVNTDVVHNLELEKPDYNIAASNADAGHDLWSFWHDNRLKLPFWYNVAKDVALIQPSSASMER 207
            VFPF++ + V  L  EK DY +AA   D  +D W FW D++ KLP W+ V  D+AL+QPSSA MER
Sbjct:   27 VFPFISEEQVDKLLTEKDDYYVAARVTDRDYDFWQFWQDHKEKLPTWFAVVLDIALVQPSSAFMER 92          
BLAST of mRNA_F-serratus_M_contig860.19999.1 vs. uniprot
Match: A0A6H5L6R8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6R8_9PHAE)

HSP 1 Score: 76.6 bits (187), Expect = 9.830e-15
Identity = 34/66 (51.52%), Postives = 44/66 (66.67%), Query Frame = 1
Query:   10 VFPFVNTDVVHNLELEKPDYNIAASNADAGHDLWSFWHDNRLKLPFWYNVAKDVALIQPSSASMER 207
            VFPF++ + V  L  EK DY +AA   D  +D W FW D++ KLP W+ V  D+AL+QPSSA MER
Sbjct:  430 VFPFISEEQVDKLLTEKDDYYVAARVTDRDYDFWQFWQDHKEKLPTWFAVVLDIALVQPSSAFMER 495          
BLAST of mRNA_F-serratus_M_contig860.19999.1 vs. uniprot
Match: A0A6H5JEX4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEX4_9PHAE)

HSP 1 Score: 68.9 bits (167), Expect = 8.400e-13
Identity = 33/67 (49.25%), Postives = 46/67 (68.66%), Query Frame = 1
Query:    7 EVFPFVNTDVVHNLELEKPDYNIAASNADAGHDLWSFWHDNRLKLPFWYNVAKDVALIQPSSASMER 207
            +V PFV   +V  L  EK D+ +AAS+ +A +   +FW+DN+ KLP W+ +  DVAL+QPSSA MER
Sbjct:   56 KVLPFVKKKMVRGLLKEKEDFYMAASDTEAEYGHMAFWNDNKKKLPTWHALVLDVALLQPSSAFMER 122          
BLAST of mRNA_F-serratus_M_contig860.19999.1 vs. uniprot
Match: A0A6H5KCX4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCX4_9PHAE)

HSP 1 Score: 67.8 bits (164), Expect = 2.290e-12
Identity = 33/67 (49.25%), Postives = 44/67 (65.67%), Query Frame = 1
Query:    7 EVFPFVNTDVVHNLELEKPDYNIAASNADAGHDLWSFWHDNRLKLPFWYNVAKDVALIQPSSASMER 207
            +V PFV + +V  L  EK DY +AAS+ D  +   +FW DN  +LP W+ +  DVAL+QPSSA MER
Sbjct:   56 KVLPFVKSKMVKGLLKEKEDYYMAASDTDIEYGHMAFWKDNEKRLPTWHALVLDVALLQPSSAFMER 122          
BLAST of mRNA_F-serratus_M_contig860.19999.1 vs. uniprot
Match: A0A6H5JD81_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD81_9PHAE)

HSP 1 Score: 68.9 bits (167), Expect = 5.080e-12
Identity = 33/67 (49.25%), Postives = 46/67 (68.66%), Query Frame = 1
Query:    7 EVFPFVNTDVVHNLELEKPDYNIAASNADAGHDLWSFWHDNRLKLPFWYNVAKDVALIQPSSASMER 207
            +V PFV   +V  L  EK D+ +AAS+ +A +   +FW+DN+ KLP W+ +  DVAL+QPSSA MER
Sbjct:  584 KVLPFVKKKMVRGLLKEKEDFYMAASDTEAEYGHMAFWNDNKKKLPTWHALVLDVALLQPSSAFMER 650          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig860.19999.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
A0A6H5KSI8_9PHAE2.380e-2369.57Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JW81_9PHAE6.130e-2269.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KPF8_9PHAE6.740e-2166.67Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5JIR3_9PHAE5.580e-1862.69Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K1T8_9PHAE3.430e-1658.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K4E0_9PHAE8.430e-1651.52Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5L6R8_9PHAE9.830e-1551.52Dimer_Tnp_hAT domain-containing protein n=2 Tax=Ec... [more]
A0A6H5JEX4_9PHAE8.400e-1349.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KCX4_9PHAE2.290e-1249.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JD81_9PHAE5.080e-1249.25Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig860contigF-serratus_M_contig860:345106..345312 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size207
Cds size207
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932532.172271-CDS-F-serratus_M_contig860:345105..3453121622932532.172271-CDS-F-serratus_M_contig860:345105..345312Fucus serratus maleCDSF-serratus_M_contig860 345106..345312 -
1690964352.709124-CDS-F-serratus_M_contig860:345105..3453121690964352.709124-CDS-F-serratus_M_contig860:345105..345312Fucus serratus maleCDSF-serratus_M_contig860 345106..345312 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig860.19999.1prot_F-serratus_M_contig860.19999.1Fucus serratus malepolypeptideF-serratus_M_contig860 345106..345312 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig860.19999.1

>prot_F-serratus_M_contig860.19999.1 ID=prot_F-serratus_M_contig860.19999.1|Name=mRNA_F-serratus_M_contig860.19999.1|organism=Fucus serratus male|type=polypeptide|length=69bp
LDEVFPFVNTDVVHNLELEKPDYNIAASNADAGHDLWSFWHDNRLKLPFW
YNVAKDVALIQPSSASMER
back to top

mRNA from alignment at F-serratus_M_contig860:345106..345312-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig860.19999.1 ID=mRNA_F-serratus_M_contig860.19999.1|Name=mRNA_F-serratus_M_contig860.19999.1|organism=Fucus serratus male|type=mRNA|length=207bp|location=Sequence derived from alignment at F-serratus_M_contig860:345106..345312- (Fucus serratus male)
CTCGACGAAGTATTTCCGTTCGTAAACACGGACGTCGTCCACAACCTTGA ACTAGAAAAACCCGACTACAACATTGCGGCGTCTAATGCGGATGCTGGGC ACGATCTGTGGAGTTTTTGGCATGACAACAGGCTGAAGCTTCCTTTTTGG TACAATGTAGCGAAGGACGTAGCGTTGATTCAGCCATCTTCTGCTTCCAT GGAGCGA
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig860:345106..345312-

>mRNA_F-serratus_M_contig860.19999.1 ID=mRNA_F-serratus_M_contig860.19999.1|Name=mRNA_F-serratus_M_contig860.19999.1|organism=Fucus serratus male|type=CDS|length=414bp|location=Sequence derived from alignment at F-serratus_M_contig860:345106..345312- (Fucus serratus male)
CTCGACGAAGTATTTCCGTTCGTAAACACGGACGTCGTCCACAACCTTGA
ACTAGAAAAACCCGACTACAACATTGCGGCGTCTAATGCGGATGCTGGGC
ACGATCTGTGGAGTTTTTGGCATGACAACAGGCTGAAGCTTCCTTTTTGG
TACAATGTAGCGAAGGACGTAGCGTTGATTCAGCCATCTTCTGCTTCCAT
GGAGCGACTCGACGAAGTATTTCCGTTCGTAAACACGGACGTCGTCCACA
ACCTTGAACTAGAAAAACCCGACTACAACATTGCGGCGTCTAATGCGGAT
GCTGGGCACGATCTGTGGAGTTTTTGGCATGACAACAGGCTGAAGCTTCC
TTTTTGGTACAATGTAGCGAAGGACGTAGCGTTGATTCAGCCATCTTCTG
CTTCCATGGAGCGA
back to top