mRNA_F-serratus_M_contig86.19989.1 (mRNA) Fucus serratus male
|
Overview
Homology
BLAST of mRNA_F-serratus_M_contig86.19989.1 vs. uniprot
Match: D8LDA4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDA4_ECTSI) HSP 1 Score: 246 bits (628), Expect = 2.180e-66 Identity = 234/787 (29.73%), Postives = 314/787 (39.90%), Query Frame = 1
Query: 526 MGADKPVFTADDDWSLYKLSPSTKGRGELVNPYDSREDPIVCGALVGANSLISLDDVLDAERNFWQKAGLSVKVDDLRHRVQLVLEDFKYVLNTLFLEYCKRASGLSMLAVSDRKAFVPGNGGALIPVEE-----------------HPQEDAPRAPSIGDSDSATRSTSSXXXXXXXXXNSTPDRRFAPINFLGWEE-EEVSSRLQRVGGTGATRRPLTVNAM----IERFRKQETKQDRDGEAVGTNAQSCDGYDSFVTQRCMTGPQFLDLANDCTLLKGCFGWEAAARVVHRVCRVGRDAKALWSKEIVGDLDVDAEDKRLSPPWRGSPGECEGRRENTCSSGNTSTSVSASSTSISTCSNSDDAAGSA---VLTVGPTPRAKSRHG--------HDDKAIDVGEAGDGVSPGVGNYDGGSARQSSTTTSWPRTATPLSKEAAFLLATEDTEGGQGPMIFPEFVEALARLCLERYAPLSPWTPAPTRPPPAAKGHGKRPVDSRGMLPDCKGRSLARGQNTNLTTPSRSLGPALAPHRLRFAFERHLLYEVVNISQAPTKRTNREIDDMMERYAPRLKKIFVFFAVDGPSIMPAPSSGPTVSGASLETASAAATESSERKDRASAETFKAKRRRMPHHLGRNMKDIRLSVREFLGMLRSLEILDSRLTAREACRICATVMGLVIVA--------NGQERGAGMGAVSQLSQKNRPRSSIDGDVLFSVGEDSMALEDFTRMVFHCGNLKTWDGVCSISQRMDAFVLNDLFERFLDRTGEASLWWNR 2763
M +KP AD WS ++L G LV+P DSREDPIVC ALV AN + L+DVL+AER FW+ G+S++V+DLRHRVQLVL DF+ VL T+F +Y +R SGL LAV+ P A + E+ S+ S P A F G EE +RLQR T R + E + G +GT G + V + M+G QFLDL ++C +L+G FGW A A V+HRV R GR+ K S EI+G C G +S T S SA+S + C S +G+ G K R G + +A+ EA + +Y G S SK T D + G + R+ + P + +G GK ++ + + Q L S+G LA HRLRFAFE+HLL EV+N S+A T++ +REI D+ME LDSRLT REACRICA V G V +A + RG G + + + + L S+G+DSM E+F+R VFHCG+LKT DG+C +SQR+ FV++DL+ERFL+RTGEASLWW R
Sbjct: 1 MAREKPASGADVGWSPHRLPSFVGEHGRLVDPCDSREDPIVCAALVKANVYVDLEDVLEAEREFWKNTGVSIRVEDLRHRVQLVLADFRDVLLTMFTDYSERESGLERLAVA------PATNPATLDAEKANGSKKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSASAPAMALEQASIPTTSVAASPFPGLLALEECPTRLQRASSPARTERIRAAGVSPVWSVGAGEGDEAEPCGGGTGMGTR-----GDRALVEKLSMSGAQFLDLVSNCEVLEGRFGWAAGASVIHRVTREGRNRKTARSLEILG---------------------CPGAHGGVDTSPKTENSDSAASARNTRCRPSSAGSGNPRRPQTKRGKQAPRKGRGGQRSGESPANSGRAVAAVEASGLSGAAMDDYVRGDGSDQSGXXXXXXXXXXXSKTGN---NTSDCQAG-----------------VNRHNEIGKLHEMPKKSAQDGQGGGKD-EETESLSKEAAFLKARAPQENQLV----SVGLPLAHHRLRFAFEQHLLPEVLNTSRASTRQADREISDIMEA------------------------------------------------------------------------------------------LDSRLTLREACRICAAVTGFVAIACPARQQATTRRRRGEENGLSGHPEGEEK-----EEEALLSIGDDSMGPEEFSRAVFHCGDLKTRDGLCPVSQRVGLFVVHDLYERFLERTGEASLWWTR 635
BLAST of mRNA_F-serratus_M_contig86.19989.1 vs. uniprot
Match: A0A6H5JM25_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM25_9PHAE) HSP 1 Score: 186 bits (471), Expect = 9.620e-46 Identity = 197/657 (29.98%), Postives = 254/657 (38.66%), Query Frame = 1
Query: 526 MGADKPVFTADDDWSLYKLSPSTKGRGELVNPYDSREDPIVCGALVGANSLISLDDVLDAERNFWQKAGLSVKVDDLRHRVQLVLEDFKYVLNTLFLEYCKRASGLSMLAV-------------------------------------------SDRKAFVPGNGGALIPVEEHPQEDAP--------------------------RAPSIGDSDSATRSTSSXXXXXXXXXNSTPDRRFAPINFLGWEE-EEVSSRLQRVGGTGATRRPLTVNAM----IERFRKQETKQDRDGEAVGTNAQSCDGYDSFVTQRCMTGPQFLDLANDCTLLKGCFGWEAAARVVHRVCRVGRDAKALWSKEIVG-----------------DLDVDAED--KRLSPPW------------RGSPGECEGRRENTCSSGNTSTSVSASSTSISTCS--------NSDDAAGSAVLTVGPTPRAKSRHGHDDKAIDVGEAGD----GVSPGVGNYDGGSARQSSTTTSWPRTATPLSKEAAFLLATEDTEGGQGPMIFPEFVEALARLCLERYAPLSPWTPAPTRPPPAAKGHGKRPVDSRGMLPDCKGRSLARGQNTNLTTPSRSLGPALAPHRLRFAFERHLLYEVVNISQAPTKRTNREIDDMME 2145
M +KP AD WS ++L G LV+P DSREDPIVC ALV AN I L+DV +AER FW+ G+S+KV+DLRHRVQLVL DF+ VL T+F +Y +R SGL LAV S + A+ E D R P D+A S P A F G EE +RL+R R + E + G +GT+ G + V + M+G QFLD ++C +L+G F W A A V+HRV R GR+ K S EI+G D++V + +R P RG +GR + T V+A+ S + + + D +G +KSR+ D V + + P DG + T S LSKEAAFL T DTEGGQG M+FPEFVEAL RLCL+RYAP W A + G Q L S+G LA HRLRFAFE+HLL E +REI D+ME
Sbjct: 1 MAREKPASGADVGWSPHRLPSFVGEHGHLVDPCDSREDPIVCAALVKANVYIDLEDVFEAEREFWKNTGVSIKVEDLRHRVQLVLADFRDVLLTMFTDYSERESGLERLAVAPATNPAKLNAEEANGSKKXXXXXXXXXXXXXXXXXXXXXXNGSVTSGSTNNSASAVAMALEQASADCDCDGRLLEAITVRTTDDLLSASLGGLQRIPGSEGVDTAFIIPPGAPPSAPSFQASIPTTSVAASPFPGLRALEECPTRLERASSPARIERIRAAGVSPVWSVGAREGDEAEPFGGGTGLGTH-----GERALVEKLSMSGAQFLDFVDNCEVLEGRFSWAAGASVIHRVTREGRNRKTARSIEILGCPGAHGGVDTSPKTKNSDMEVSGRNTTRRCRPSSAASGNPRRPQTKRGEQAPHKGRGGHRSGESPTKGGVAAAEASGQSGAAMGDRVRGDGSDKSGGXXXXXXXXTTSKSRNNTSDCQAGVNQQNEIGKLHEMPKKPAQDGLGGGEDIETES-------LSKEAAFLKVTGDTEGGQGGMLFPEFVEALTRLCLKRYAP---WV--------APRNQGPXXXXXXXXXXXXXXXRPRAPQENQLV----SVGLPLAHHRLRFAFEQHLLPEA-----------DREISDIME 619
BLAST of mRNA_F-serratus_M_contig86.19989.1 vs. uniprot
Match: A0A6H5JFN5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFN5_9PHAE) HSP 1 Score: 123 bits (309), Expect = 4.280e-29 Identity = 65/123 (52.85%), Postives = 81/123 (65.85%), Query Frame = 1
Query: 2410 LEILDSRLTAREACRICATVMGLVIVANGQERGAGM----GAVSQLSQKNRPRSSIDGD-VLFSVGEDSMALEDFTRMVFHCGNLKTWDGVCSISQRMDAFVLNDLFERFLDRTGEASLWWNR 2763
L+ LDSRLT EACRIC V G V +A + A G + LS P G+ L S+G+DSM E F+R VFHCG+LKTWDG+C +SQR+ FV++DL+ERFL+RTGEASLWW R
Sbjct: 15 LQALDSRLTLHEACRICTAVTGFVAIACPARQQATTRRRRGEENGLS--GHPEGEEKGEEALLSIGDDSMDPEQFSRAVFHCGDLKTWDGLCPVSQRVGRFVVHDLYERFLERTGEASLWWTR 135 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig86.19989.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig86.19989.1 >prot_F-serratus_M_contig86.19989.1 ID=prot_F-serratus_M_contig86.19989.1|Name=mRNA_F-serratus_M_contig86.19989.1|organism=Fucus serratus male|type=polypeptide|length=908bp MEAYLARSSAEATAFRRRGEAAFRAGRYTESIRAFTLAIDITRKLFREGNback to top mRNA from alignment at F-serratus_M_contig86:647970..681184+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig86.19989.1 ID=mRNA_F-serratus_M_contig86.19989.1|Name=mRNA_F-serratus_M_contig86.19989.1|organism=Fucus serratus male|type=mRNA|length=33215bp|location=Sequence derived from alignment at F-serratus_M_contig86:647970..681184+ (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig86:647970..681184+ >mRNA_F-serratus_M_contig86.19989.1 ID=mRNA_F-serratus_M_contig86.19989.1|Name=mRNA_F-serratus_M_contig86.19989.1|organism=Fucus serratus male|type=CDS|length=5448bp|location=Sequence derived from alignment at F-serratus_M_contig86:647970..681184+ (Fucus serratus male)back to top |