mRNA_F-serratus_M_contig86.19986.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_F-serratus_M_contig86.19986.1
Unique Name	mRNA_F-serratus_M_contig86.19986.1
Type	mRNA
Organism	Fucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))

Homology

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BLAST of mRNA_F-serratus_M_contig86.19986.1 vs. uniprot
Match: A0A6H5L1V4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1V4_9PHAE)

HSP 1 Score: 147 bits (371), Expect = 1.230e-34
Identity = 92/179 (51.40%), Postives = 110/179 (61.45%), Query Frame = 3

Query:  123 IARTVAYNNRAVLLIAGGRCGEACRLLRACLLLLPREPRPAFNLALVLWRMELPREACAHWLEARGWLKSGHDSGGGGSGGVTGVQK--FTRLLESARRRKALLESDAESKRAAGSCRGSG---------------------AVVTSHVVDGTG-DPLSVPPIQLSLLDIKTLSWWIKN 587
            +AR  A+NNRAVLLIA GR  EACRLLRACLLLLP EPRP FN +L LWR+   R+ACAHWLEAR WL            GV G ++  + +LLESARRRK  L+SDA +K  A    G G                       VTSHV +G+G DPLS+P IQ+ LLDI+ L+WW+ N
Sbjct:  905 LARAAAFNNRAVLLIAFGRGEEACRLLRACLLLLPEEPRPTFNFSLALWRLGRRRDACAHWLEARRWL------------GVGGGRREAYVKLLESARRRKLSLQSDAVNK--ANKTGGHGDSXXXXXXXXXXXXXXXXXXXXXVTSHVTEGSGGDPLSLPQIQVCLLDIRCLTWWLDN 1069

The following BLAST results are available for this feature:

BLAST of mRNA_F-serratus_M_contig86.19986.1 vs. uniprot

BLAST of mRNA_F-serratus_M_contig86.19986.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A6H5L1V4_9PHAE	1.230e-34	51.40	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
F-serratus_M_contig86	contig	F-serratus_M_contig86:485222..487451 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90	2022-09-19
OGS1.0 of Fucus serratus male	2021-02-24

Properties


Property Name	Value
Hectar predicted targeting category	other localisation
Exons	3
Model size	1283
Cds size	432
Stop	1
Start	1

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_F-serratus_M_contig86.19986.1	prot_F-serratus_M_contig86.19986.1	Fucus serratus male	polypeptide	F-serratus_M_contig86 485494..486872 +

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622932527.8134434-UTR-F-serratus_M_contig86:485221..485493	1622932527.8134434-UTR-F-serratus_M_contig86:485221..485493	Fucus serratus male	UTR	F-serratus_M_contig86 485222..485493 +
1690964350.6973417-UTR-F-serratus_M_contig86:485221..485493	1690964350.6973417-UTR-F-serratus_M_contig86:485221..485493	Fucus serratus male	UTR	F-serratus_M_contig86 485222..485493 +
1622932527.91919-UTR-F-serratus_M_contig86:486872..487451	1622932527.91919-UTR-F-serratus_M_contig86:486872..487451	Fucus serratus male	UTR	F-serratus_M_contig86 486873..487451 +
1690964350.747275-UTR-F-serratus_M_contig86:486872..487451	1690964350.747275-UTR-F-serratus_M_contig86:486872..487451	Fucus serratus male	UTR	F-serratus_M_contig86 486873..487451 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622932527.8630142-CDS-F-serratus_M_contig86:485493..485640	1622932527.8630142-CDS-F-serratus_M_contig86:485493..485640	Fucus serratus male	CDS	F-serratus_M_contig86 485494..485640 +
1690964350.7110167-CDS-F-serratus_M_contig86:485493..485640	1690964350.7110167-CDS-F-serratus_M_contig86:485493..485640	Fucus serratus male	CDS	F-serratus_M_contig86 485494..485640 +
1622932527.8828702-CDS-F-serratus_M_contig86:485809..485932	1622932527.8828702-CDS-F-serratus_M_contig86:485809..485932	Fucus serratus male	CDS	F-serratus_M_contig86 485810..485932 +
1690964350.722277-CDS-F-serratus_M_contig86:485809..485932	1690964350.722277-CDS-F-serratus_M_contig86:485809..485932	Fucus serratus male	CDS	F-serratus_M_contig86 485810..485932 +
1622932527.902372-CDS-F-serratus_M_contig86:486710..486872	1622932527.902372-CDS-F-serratus_M_contig86:486710..486872	Fucus serratus male	CDS	F-serratus_M_contig86 486711..486872 +
1690964350.7346995-CDS-F-serratus_M_contig86:486710..486872	1690964350.7346995-CDS-F-serratus_M_contig86:486710..486872	Fucus serratus male	CDS	F-serratus_M_contig86 486711..486872 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at F-serratus_M_contig86:485222..487451+
coding sequence from alignment at F-serratus_M_contig86:485222..487451+

protein sequence of mRNA_F-serratus_M_contig86.19986.1

>prot_F-serratus_M_contig86.19986.1 ID=prot_F-serratus_M_contig86.19986.1|Name=mRNA_F-serratus_M_contig86.19986.1|organism=Fucus serratus male|type=polypeptide|length=144bp
MELPREACAHWLEARGWLKSGHDSGGGGSGGVTGVQKFTRLLESARRRKA
LLESDAESKRAAGSCRGSGAVVTSHVVDGTGDPLSVPPIQLSLLDIKTLS
WWIKNMASDASGHTPPTTAGGKGVAVSEVAPARGSLRSLLTSR*

mRNA from alignment at F-serratus_M_contig86:485222..487451+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_F-serratus_M_contig86.19986.1 ID=mRNA_F-serratus_M_contig86.19986.1|Name=mRNA_F-serratus_M_contig86.19986.1|organism=Fucus serratus male|type=mRNA|length=2230bp|location=Sequence derived from alignment at F-serratus_M_contig86:485222..487451+ (Fucus serratus male)
CCGCCATCGAGGCGAGCTCTCGCGGGGGCAAAGCCGTGTCCGCCTCCGCT
ACAGAAACAGAAGCAGCAGTAGCAACACCGGCGGCGGCTGCGATAGCCGA
GGCGCAAGAGCGTCATCGCCGGATCGCCCGCACCGTAGCGTACAACAACA
GGGCGGTGCTTCTGATCGCCGGGGGCCGTTGCGGGGAGGCATGTCGATTG
CTCCGCGCGTGTCTGTTGCTCCTCCCCCGGGAGCCACGCCCGGCGTTCAA
CCTTGCCCTGGTTCTGTGGAGGATGGAACTCCCGAGAGAGGCGTGCGCCC
ACTGGCTAGAGGCGAGAGGCTGGTTGAAGTCGGGACATGACAGCGGTGGA
GGTGGCAGCGGTGGCGTGACTGGGGTGCAGAAATTCACGAGGTTGCTTGA
GTCGGCTCGACGGCGTAAGGTGTGTTTGCTGACAGGTACTGTGGACGGGG
GTAGGTACAGGTTAGGAGCATGGGAGTCTTTGTCCTGCCTCAAGATCACC
TAAGACCCGGAATGATTTCATGGAAGTGCTTCCCCCCGCTCATTGTTTTT
GCCGTCACGCTTCGTGTGCCATGGTGATGACGAACAAGGCTTTGCTGGAG
TCGGATGCGGAGAGCAAGCGCGCAGCAGGATCGTGTCGTGGCAGCGGGGC
GGTGGTGACGTCACACGTCGTGGACGGCACCGGAGACCCCCTTTCCGTGC
CGCCGATTCAGGTGCCCCCACCCCTCATAAGCAAATACACATGCTTTACG
TTTTGTTACAACCTATGGAGATGGTGACGCACTCGGGATCGAAAAACTTT
TGATACAGACCCCGCTTCTTCGCGTGGGCTGGTCTATTAGCCCCCGCTCC
AGCTCTAGTGTGTACAAATGCCTGGCGTTTCATTGTTTTCGGCAAGAACC
GCAGTCGGTGATGATGGCTGACATCACACACACACACATACACAGAGTGT
GTCCCCTTTGTCGCGTATGAATAGAGGTTTTCGATCAATGCGAGGAGCAT
AGAATGACTAGGATGACAGTGCCGGATTGCGCGGCTATGTGCAATTTAAT
CAGTACACGCACACACACACATTTGTTGAAATGGGAGGGAGAACAACGCG
TTCTAAGTGAAAGCGTGGCCAGCGGTTCCGAGGCGCGCGTAGACCGACCG
CGGATTTAGCCAGACGCAACCGTTCCTCGAGAAAGAACTGCGGGTTTCTC
AATTGGCGAAGGCGTTGCGCTAGTAGCCACCAGCACAATTCAACACAGCG
AGACGAACTCCGCGGGAACCTCGAACCACACACGTGTATCCCTCATGACC
TTTTTCTTACTTACCCTCTTCCGGGTCATGGCCGTCAAATCGTACTTGCA
CGCACGTCTTGATTCAGGATAACTGGCGCTGTTCTCCGAAAGCGAAATAA
TTCTTACGTCGCCCCACCCCGTCACACCCCATCTCTTCCCCACCCGACCC
TCGTCTGCCCCGCTGTGTACCTTACGCACCATCTCTCAGCTTTCCCTGCT
CGATATCAAGACGCTCTCGTGGTGGATTAAGAACATGGCCTCGGATGCCA
GTGGTCATACACCACCGACGACTGCGGGTGGGAAGGGTGTAGCTGTGAGC
GAGGTTGCCCCTGCGCGTGGGAGCTTGCGCTCGCTGCTGACGTCGCGCTG
ACTGACTCAAAGGGATTCTCGATTACGACGATGTCAAGGGAGATTTTGCA
GGGAGGGCTGGTAGACGTTGGGCGCGGCGGGGCTGGGCCGGACTGACTGA
AGAAAATATTAGTTTTTTTCTCTCTCTCTTGCAGCGGCTGTTATGCCTAT
GGTCTCTGGGATTTGTAAGGATCCCGCCACGGGTTTTGTGGCGCTTGAGT
GGAACTCTTCAATTGCTTTCTCTTCCGAGGGGACCCGGGGCTCTCGCCGA
GGAAATTGCTGCCGAGATGGAAAGTTTGTCCGTAAGATCGAGCTACAAAA
ATGTTTTTATCGTCTATCCTTGGTTGACGCGGTCCTATATCTGGAGGTAG
TGTTGAAGAGCTCCTTCGAGATTAGGATGAAGTAGATGGCTTAAAAGGGA
GCAGGGGAGGGCGAATACGTTGCACGAGTCCCCTAACTTTCCGTCCGAGG
ATTATGTGTTATGTGGAGTAACGGCGTTTAATAGAAGGGGACGGGTGGGT
GGTGTTTGTATCTTACCAGGTGTCGCTGTAGTGCTGTATACGCTTGCGCT
GTATCCGCGAGATTCCGACGTACGCGCCCC

Coding sequence (CDS) from alignment at F-serratus_M_contig86:485222..487451+

>mRNA_F-serratus_M_contig86.19986.1 ID=mRNA_F-serratus_M_contig86.19986.1|Name=mRNA_F-serratus_M_contig86.19986.1|organism=Fucus serratus male|type=CDS|length=864bp|location=Sequence derived from alignment at F-serratus_M_contig86:485222..487451+ (Fucus serratus male)
ATGGAACTCCCGAGAGAGGCGTGCGCCCACTGGCTAGAGGCGAGAGGCTG
GTTGAAGTCGGGACATGACAGCGGTGGAGGTGGCAGCGGTGGCGTGACTG
GGGTGCAGAAATTCACGAGGTTGCTTGAGTCGGCTCGACGGCGTAAGATG
GAACTCCCGAGAGAGGCGTGCGCCCACTGGCTAGAGGCGAGAGGCTGGTT
GAAGTCGGGACATGACAGCGGTGGAGGTGGCAGCGGTGGCGTGACTGGGG
TGCAGAAATTCACGAGGTTGCTTGAGTCGGCTCGACGGCGTAAGGCTTTG
CTGGAGTCGGATGCGGAGAGCAAGCGCGCAGCAGGATCGTGTCGTGGCAG
CGGGGCGGTGGTGACGTCACACGTCGTGGACGGCACCGGAGACCCCCTTT
CCGTGCCGCCGATTCAGGCTTTGCTGGAGTCGGATGCGGAGAGCAAGCGC
GCAGCAGGATCGTGTCGTGGCAGCGGGGCGGTGGTGACGTCACACGTCGT
GGACGGCACCGGAGACCCCCTTTCCGTGCCGCCGATTCAGCTTTCCCTGC
TCGATATCAAGACGCTCTCGTGGTGGATTAAGAACATGGCCTCGGATGCC
AGTGGTCATACACCACCGACGACTGCGGGTGGGAAGGGTGTAGCTGTGAG
CGAGGTTGCCCCTGCGCGTGGGAGCTTGCGCTCGCTGCTGACGTCGCGCT
GACTTTCCCTGCTCGATATCAAGACGCTCTCGTGGTGGATTAAGAACATG
GCCTCGGATGCCAGTGGTCATACACCACCGACGACTGCGGGTGGGAAGGG
TGTAGCTGTGAGCGAGGTTGCCCCTGCGCGTGGGAGCTTGCGCTCGCTGC
TGACGTCGCGCTGA