mRNA_F-serratus_M_contig856.19957.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig856.19957.1
Unique NamemRNA_F-serratus_M_contig856.19957.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig856.19957.1 vs. uniprot
Match: D8LJ91_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ91_ECTSI)

HSP 1 Score: 112 bits (281), Expect = 2.900e-26
Identity = 84/194 (43.30%), Postives = 113/194 (58.25%), Query Frame = -1 
Query:  188 LWVRTTQNVEDDMTTH-RTDL-VTTRDAVIDCRIDRGCNSIAVN------TVGPHSVTKVNVDPYARKITVQPNLDVQGNAGEVKVTTRLKGGAFY-ELTVRRGGHSTVLELC*RMDNNNVITRNIYTYLTTGGIIVYFNRN*---LATGLTT*RRNKRTRTEKNCRVLCPVKGNIALTSNGDS-VISLKRCVT 730
            LWV TTQ++ DDMT + R D+ + +++AVIDCR++ G +S+AV+      T+GP  +TK ++D   RK+ VQP +DVQG  GEV V   L G     ELTV     S VLE+C R+D+NNVI+  +   L TG I V  NR+     A   T  R N      +   V   VKGN+ LTSNG +  IS KR +T
Sbjct:  104 LWVSTTQDLGDDMTANLRADMDIDSKNAVIDCRVNSGRDSVAVDFDTADSTMGPLRITK-HLDLNGRKVIVQPTVDVQGKTGEVVVAAELDGDVTSAELTVNHAEDSAVLEVCHRLDDNNVISPKVD--LKTGDIAVRLNRSLGDARAVKFTAQRENVDWEYLEGAWV---VKGNVPLTSNGATGAISFKRSIT 291
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BLAST of mRNA_F-serratus_M_contig856.19957.1 vs. uniprot
Match: A0A6H5K004_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K004_9PHAE)

HSP 1 Score: 110 bits (274), Expect = 1.140e-24
Identity = 82/194 (42.27%), Postives = 113/194 (58.25%), Query Frame = -1 
Query:  188 LWVRTTQNVEDDMTTH-RTDL-VTTRDAVIDCRIDRGCNSIAVN------TVGPHSVTKVNVDPYARKITVQPNLDVQGNAGEVKVTTRLKGGAFY-ELTVRRGGHSTVLELC*RMDNNNVITRNIYTYLTTGGIIVYFNRN*---LATGLTT*RRNKRTRTEKNCRVLCPVKGNIALTSNGDS-VISLKRCVT 730
            LWV TTQ++ DDMT + R D+ + +++AVIDCR++ G +S+AV+      T+GP  +TK ++D   RK+ VQP +DVQG  GEV +   L G     ELTV     S VLE+C R+D+NNVI+  +   L TG I V  NR+     A   T  R N      +   V   VKGN+ LTS+G +  IS KR +T
Sbjct:  184 LWVSTTQDLGDDMTANLRADMDIDSKNAVIDCRVNSGRDSVAVDFDTADSTMGPLRITK-HLDLNGRKVIVQPTVDVQGKTGEVVIAAELDGDVTSAELTVNHAEDSAVLEVCHRLDDNNVISPKVD--LKTGDIAVRLNRSLGDARAVKFTAQRENVDWEYLEGPWV---VKGNVPLTSDGSTGAISFKRSIT 371
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig856.19957.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LJ91_ECTSI2.900e-2643.30Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K004_9PHAE1.140e-2442.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig856contigF-serratus_M_contig856:162943..163672 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size731
Cds size615
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932518.8121061-UTR-F-serratus_M_contig856:162942..1630571622932518.8121061-UTR-F-serratus_M_contig856:162942..163057Fucus serratus maleUTRF-serratus_M_contig856 162943..163057 +
1690964347.4327302-UTR-F-serratus_M_contig856:162942..1630571690964347.4327302-UTR-F-serratus_M_contig856:162942..163057Fucus serratus maleUTRF-serratus_M_contig856 162943..163057 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932518.8325377-CDS-F-serratus_M_contig856:163057..1636721622932518.8325377-CDS-F-serratus_M_contig856:163057..163672Fucus serratus maleCDSF-serratus_M_contig856 163058..163672 +
1690964347.4506536-CDS-F-serratus_M_contig856:163057..1636721690964347.4506536-CDS-F-serratus_M_contig856:163057..163672Fucus serratus maleCDSF-serratus_M_contig856 163058..163672 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig856.19957.1prot_F-serratus_M_contig856.19957.1Fucus serratus malepolypeptideF-serratus_M_contig856 163058..163672 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig856.19957.1

>prot_F-serratus_M_contig856.19957.1 ID=prot_F-serratus_M_contig856.19957.1|Name=mRNA_F-serratus_M_contig856.19957.1|organism=Fucus serratus male|type=polypeptide|length=205bp
MLPFPECHLRCRLLLKVVYFFYQEGDASLQGDDRVAITCEGNVALDRTQH
PTVFLSPRSLVPPSCCQPGRQLVPVEVHDNAARSKICIDIAGDDVIVIHS
LAQLKHGGVPSTSHCQLVESAALEPGGYLNLARVALHIQVWLYGYLACVG
VDVYFGHGVGAHGVDGNRVAAPVDAAVDHCVPRRHQVCSMRGHVVLDVLG
GANPE
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mRNA from alignment at F-serratus_M_contig856:162943..163672+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig856.19957.1 ID=mRNA_F-serratus_M_contig856.19957.1|Name=mRNA_F-serratus_M_contig856.19957.1|organism=Fucus serratus male|type=mRNA|length=730bp|location=Sequence derived from alignment at F-serratus_M_contig856:162943..163672+ (Fucus serratus male)
CACCCTACCCCTTAACGTCACTCAAACAAATAGAGAAACGCGTGCACAAG
TCGCACGCCTCAACACCGACACATAATGAGAATCTCCACATGCATAAAAT
CCTCGAAAGGTCTCAATGCTGCCTTTTCCTGAATGCCACCTACGCTGCAG
ATTATTGCTCAAGGTGGTGTATTTCTTTTACCAGGAAGGTGACGCATCGC
TTCAAGGAGATGACCGAGTCGCCATTACTTGTGAGGGCAATGTTGCCCTT
GACCGGACACAGCACCCTACAGTTTTTCTCAGTCCTCGTTCTCTTGTTCC
GCCGTCATGTTGTCAGCCCGGTCGCCAGTTAGTTCCGGTTGAAGTACACG
ATAATGCCGCCCGTAGTAAGATATGTATAGATATTGCGGGTGATGACGTT
ATTGTTATCCATTCGTTAGCACAGCTCAAGCACGGTGGAGTGCCCTCCAC
GTCTCACTGTCAGCTCGTAGAAAGCGCCGCCCTTGAGCCTGGTGGTTACC
TTAACCTCGCCCGCGTTGCCTTGCACATCCAAGTTTGGCTGTACGGTTAT
CTTGCGTGCGTAGGGGTCGACGTTTACTTTGGTCACGGAGTGGGGGCCCA
CGGTGTTGACGGCAATAGAGTTGCAGCCCCTGTCGATGCGGCAGTCGATC
ACTGCGTCCCTCGTCGTCACCAAGTCTGTTCGATGCGTGGTCATGTCGTC
CTCGACGTTCTGGGTGGTGCGAACCCAGAG
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Coding sequence (CDS) from alignment at F-serratus_M_contig856:162943..163672+

>mRNA_F-serratus_M_contig856.19957.1 ID=mRNA_F-serratus_M_contig856.19957.1|Name=mRNA_F-serratus_M_contig856.19957.1|organism=Fucus serratus male|type=CDS|length=1230bp|location=Sequence derived from alignment at F-serratus_M_contig856:162943..163672+ (Fucus serratus male)
ATGCTGCCTTTTCCTGAATGCCACCTACGCTGCAGATTATTGCTCAAGGT
GGTGTATTTCTTTTACCAGGAAGGTGACGCATCGCTTCAAGGAGATGACC
GAGTCGCCATTACTTGTGAGGGCAATGTTGCCCTTGACCGGACACAGCAC
CCTACAGTTTTTCTCAGTCCTCGTTCTCTTGTTCCGCCGTCATGTTGTCA
GCCCGGTCGCCAGTTAGTTCCGGTTGAAGTACACGATAATGCCGCCCGTA
GTAAGATATGTATAGATATTGCGGGTGATGACGTTATTGTTATCCATTCG
TTAGCACAGCTCAAGCACGGTGGAGTGCCCTCCACGTCTCACTGTCAGCT
CGTAGAAAGCGCCGCCCTTGAGCCTGGTGGTTACCTTAACCTCGCCCGCG
TTGCCTTGCACATCCAAGTTTGGCTGTACGGTTATCTTGCGTGCGTAGGG
GTCGACGTTTACTTTGGTCACGGAGTGGGGGCCCACGGTGTTGACGGCAA
TAGAGTTGCAGCCCCTGTCGATGCGGCAGTCGATCACTGCGTCCCTCGTC
GTCACCAAGTCTGTTCGATGCGTGGTCATGTCGTCCTCGACGTTCTGGGT
GGTGCGAACCCAGAGATGCTGCCTTTTCCTGAATGCCACCTACGCTGCAG
ATTATTGCTCAAGGTGGTGTATTTCTTTTACCAGGAAGGTGACGCATCGC
TTCAAGGAGATGACCGAGTCGCCATTACTTGTGAGGGCAATGTTGCCCTT
GACCGGACACAGCACCCTACAGTTTTTCTCAGTCCTCGTTCTCTTGTTCC
GCCGTCATGTTGTCAGCCCGGTCGCCAGTTAGTTCCGGTTGAAGTACACG
ATAATGCCGCCCGTAGTAAGATATGTATAGATATTGCGGGTGATGACGTT
ATTGTTATCCATTCGTTAGCACAGCTCAAGCACGGTGGAGTGCCCTCCAC
GTCTCACTGTCAGCTCGTAGAAAGCGCCGCCCTTGAGCCTGGTGGTTACC
TTAACCTCGCCCGCGTTGCCTTGCACATCCAAGTTTGGCTGTACGGTTAT
CTTGCGTGCGTAGGGGTCGACGTTTACTTTGGTCACGGAGTGGGGGCCCA
CGGTGTTGACGGCAATAGAGTTGCAGCCCCTGTCGATGCGGCAGTCGATC
ACTGCGTCCCTCGTCGTCACCAAGTCTGTTCGATGCGTGGTCATGTCGTC
CTCGACGTTCTGGGTGGTGCGAACCCAGAG
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