mRNA_F-serratus_M_contig855.19951.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig855.19951.1
Unique NamemRNA_F-serratus_M_contig855.19951.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig855.19951.1 vs. uniprot
Match: A0A6H5JY30_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JY30_9PHAE)

HSP 1 Score: 144 bits (363), Expect = 2.050e-41
Identity = 70/121 (57.85%), Postives = 97/121 (80.17%), Query Frame = 3
Query:    9 MAPLEFSALNYYHVRDGQPGQAYPWLKKMKVIEPHRETILTVTNPSEGLEYRWILRVDETD--EIQASASGTEVAVVLTQLNEHVITLQEVNSAGLVIRHLEEIVMVKYVRREIRTLTDVE 365
            +APL F ALN+YH+RDG+P Q YPWL+ +K+IEPHRET ++V++P +G +Y W +R  +TD  +++ASA G  V + LT L+++VITL+EVNS G ++R L+E+VMVKYVRREIRTLTD E
Sbjct:   57 VAPLSFQALNFYHIRDGKPAQDYPWLQDVKLIEPHRETTMSVSSPRDGYDYIWEVRSGDTDNTKVRASARGAVVLITLTILDDNVITLKEVNSDGEIMRQLDELVMVKYVRREIRTLTDNE 177          
BLAST of mRNA_F-serratus_M_contig855.19951.1 vs. uniprot
Match: A0A6H5JRR4_9PHAE (TYR protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JRR4_9PHAE)

HSP 1 Score: 149 bits (375), Expect = 2.590e-39
Identity = 73/121 (60.33%), Postives = 97/121 (80.17%), Query Frame = 3
Query:    9 MAPLEFSALNYYHVRDGQPGQAYPWLKKMKVIEPHRETILTVTNPSEGLEYRWILRVDETD--EIQASASGTEVAVVLTQLNEHVITLQEVNSAGLVIRHLEEIVMVKYVRREIRTLTDVE 365
            +APL F ALN+YH+RDG+P Q YPWL+ +K+IEPHRET LTV++P +G +Y W +R  +TD  E++ASA G E  + LT L+++VITL+EVNS G ++R L+E+VMVKYVRREIRTLTD E
Sbjct:  124 VAPLAFQALNFYHIRDGKPAQDYPWLQDVKLIEPHRETTLTVSSPRDGYDYIWEVRSGDTDDTEVRASARGAEALITLTILDDNVITLKEVNSDGEIMRQLDELVMVKYVRREIRTLTDDE 244          
BLAST of mRNA_F-serratus_M_contig855.19951.1 vs. uniprot
Match: A0A6H5K485_9PHAE (TYR protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K485_9PHAE)

HSP 1 Score: 145 bits (366), Expect = 4.890e-38
Identity = 71/121 (58.68%), Postives = 95/121 (78.51%), Query Frame = 3
Query:    9 MAPLEFSALNYYHVRDGQPGQAYPWLKKMKVIEPHRETILTVTNPSEGLEYRWILRVDETDE--IQASASGTEVAVVLTQLNEHVITLQEVNSAGLVIRHLEEIVMVKYVRREIRTLTDVE 365
            +APL F ALN+YH+RDG+P Q YPWLK +K+IEPHRET L+V++P +G +Y W +R  ETDE  + A+A G E  V LT L+++VIT++EV+  G ++R L+E+VMVKYVRREIRTLTD E
Sbjct:  118 VAPLSFQALNFYHIRDGKPAQDYPWLKGVKLIEPHRETTLSVSSPRDGHDYIWEVRAGETDEANLVATARGAEAVVTLTTLDDNVITVKEVHPDGHIVRRLDEVVMVKYVRREIRTLTDEE 238          
BLAST of mRNA_F-serratus_M_contig855.19951.1 vs. uniprot
Match: A0A6H5J7R8_9PHAE (TYR protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7R8_9PHAE)

HSP 1 Score: 140 bits (352), Expect = 3.730e-36
Identity = 69/122 (56.56%), Postives = 93/122 (76.23%), Query Frame = 3
Query:    9 MAPLEFSALNYYHVRDGQPGQAYPWLKKMKVIEPHRETILTVTNPSEGLEYRWILRVDETD--EIQASASGTEVAVVLTQLNEHVITLQEVNS-AGLVIRHLEEIVMVKYVRREIRTLTDVE 365
            +APL F A N+YH+RDG+P   YPWLK++K+IEPHRET  TV++P +G EYRW +R  + D  +++A ASG E  ++LT L++ +I L+EVN+  G+V R LEE VMVKYVRRE+RTLTD E
Sbjct:  126 LAPLSFEATNFYHIRDGKPALDYPWLKEVKLIEPHRETTFTVSSPRDGFEYRWTVRGADADKDDLRAEASGAETVMILTVLDDTIIDLEEVNTETGVVARRLEEKVMVKYVRRELRTLTDEE 247          
BLAST of mRNA_F-serratus_M_contig855.19951.1 vs. uniprot
Match: D7FW00_ECTSI (Ortho-aminophenol oxidase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FW00_ECTSI)

HSP 1 Score: 136 bits (343), Expect = 5.260e-35
Identity = 68/121 (56.20%), Postives = 91/121 (75.21%), Query Frame = 3
Query:    9 MAPLEFSALNYYHVRDGQPGQAYPWLKKMKVIEPHRETILTVTNPSEGLEYRWILRVDETDE--IQASASGTEVAVVLTQLNEHVITLQEVNSAGLVIRHLEEIVMVKYVRREIRTLTDVE 365
            +APL F ALN+YH+RDG+P Q Y WL+ +K+IEPHRET L V++P +G +Y W +   ETDE  + A+ASG E  V LT L++ +IT++EV   G ++R L+E+VMVKYVRREIRTLTD E
Sbjct:   90 VAPLSFEALNFYHIRDGKPAQDYTWLRDVKLIEPHRETTLLVSSPRDGYDYIWEVHAGETDEGDLIATASGAEAVVTLTVLDDSMITVKEVLPDGEIVRQLDEMVMVKYVRREIRTLTDEE 210          
BLAST of mRNA_F-serratus_M_contig855.19951.1 vs. uniprot
Match: D8LC28_ECTSI (TYRosinase family member (Tyr-4) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC28_ECTSI)

HSP 1 Score: 134 bits (337), Expect = 3.800e-34
Identity = 75/127 (59.06%), Postives = 89/127 (70.08%), Query Frame = 3
Query:   18 LEFSALNYYHVRDGQPGQAYPWLKKMKVIEPHRETILTVTNPSEGLEYRWILRVDETDEIQASASGTEVA----------VVLTQLNEHVITLQEVNSA-GLVIRHLEEIVMVKYVRREIRTLTDVE 365
            L F+ALN+YHVRDG+PGQ YPWLK  K++EPHRET L V  P EG EYRW +R   T +   S+SG E +          VVLT L E++ITL+EVN A G V+R LEE VMVKYVRREIR+LTD E
Sbjct:  112 LAFTALNFYHVRDGKPGQDYPWLKDFKLVEPHRETTLAVEAPREGFEYRWDVRPTCTGDSCTSSSGGESSPIQAAGAVAEVVLTSLEENMITLEEVNVADGKVVRRLEETVMVKYVRREIRSLTDDE 238          
BLAST of mRNA_F-serratus_M_contig855.19951.1 vs. uniprot
Match: D8LC42_ECTSI (TYRosinase family member (Tyr-4) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC42_ECTSI)

HSP 1 Score: 134 bits (337), Expect = 4.160e-34
Identity = 73/136 (53.68%), Postives = 90/136 (66.18%), Query Frame = 3
Query:   15 PLEFSALNYYHVRDGQPGQAYPWLKKMKVIEPHRETILTVTNPSEGLEYRWILRVDE------------------TDEIQASASGTEVAVVLTQLNEHVITLQEVNS-AGLVIRHLEEIVMVKYVRREIRTLTDVE 365
            PL F+ALN+YHVRDG+P Q YPWLK +K+IEPHRET L V  P +G EYRW + +                    T+E+ A+ASG E  VV T L E+ ++L+EVNS  G+V R L+E VMVKYVRREIRTLTD E
Sbjct:  132 PLSFTALNFYHVRDGKPAQDYPWLKDVKLIEPHRETTLDVETPRDGFEYRWKVLLGAPVSITDSAPASSFEEEGVTEEVVATASGAEAVVVFTHLGENSVSLEEVNSDTGVVTRRLQEKVMVKYVRREIRTLTDDE 267          
BLAST of mRNA_F-serratus_M_contig855.19951.1 vs. uniprot
Match: A0A6H5J676_9PHAE (TYR protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5J676_9PHAE)

HSP 1 Score: 127 bits (318), Expect = 1.540e-31
Identity = 66/118 (55.93%), Postives = 85/118 (72.03%), Query Frame = 3
Query:   15 PLEFSALNYYHVRDGQPGQAYPWLKKMKVIEPHRETILTVTNPSEGLEYRWILRVDET-DEIQASASGTEVAVVLT--QLNEHVITLQEVNSA-GLVIRHLEEIVMVKYVRREIRTLT 356
            PL F A N+YHVRDG+P   YPWL+ +K++EPHRET L+V +P EG EYRW++R   +  ++  +ASG E  VVL    L E+++TL+EV  A G V R L+E VMVKYVRREIRTLT
Sbjct:  105 PLAFHARNFYHVRDGKPASDYPWLRDVKLVEPHRETTLSVDDPREGFEYRWLIRGGSSASKVHTAASGAEAVVVLEAKHLEENLVTLEEVEIATGAVARRLDEFVMVKYVRREIRTLT 222          
BLAST of mRNA_F-serratus_M_contig855.19951.1 vs. uniprot
Match: D8LC46_ECTSI (Tyrosinase_Cu-bd domain-containing protein n=3 Tax=Ectocarpus TaxID=2879 RepID=D8LC46_ECTSI)

HSP 1 Score: 124 bits (310), Expect = 1.890e-30
Identity = 63/118 (53.39%), Postives = 83/118 (70.34%), Query Frame = 3
Query:   18 LEFSALNYYHVRDGQPGQAYPWLKKMKVIEPHRETILTVTNPSEGLEYRWILRVDET--DEIQASASGTEVAVVLTQLNEHVITLQEVNSAGLVIRHLEEIVMVKYVRREIRTLTDVE 365
            L F A N+Y +RDG+P Q YPWLK +K+IEPHRET  TV++P +G +YRW +        E+   A+G E  VVLT L+E+ + L+EV++ G V+R  +E VMVKYVRREIRTLTD E
Sbjct:  166 LSFEATNFYQLRDGKPAQDYPWLKDVKLIEPHRETTFTVSSPRDGFDYRWRVFAGSAAEGELCTEATGPESTVVLTTLDENEVVLEEVDADGTVVRRRQEKVMVKYVRREIRTLTDDE 283          
BLAST of mRNA_F-serratus_M_contig855.19951.1 vs. uniprot
Match: D7G9A4_ECTSI (Ortho-aminophenol oxidase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9A4_ECTSI)

HSP 1 Score: 114 bits (285), Expect = 4.250e-27
Identity = 58/99 (58.59%), Postives = 77/99 (77.78%), Query Frame = 3
Query:   75 YPWLKKMKVIEPHRETILTVTNPSEGLEYRWILRVDETDEIQ--ASASGTEVAVVLTQLNEHVITLQEVNSAGLVIRHLEEIVMVKYVRREIRTLTDVE 365
            YPWL+ +K+IEPHRETIL V++P +G +Y W +R  ETDE    A+ASG E  V LT L+E++IT++EV+  G ++R L+E+VMVKYVRREIRTLTD E
Sbjct:  110 YPWLRDVKLIEPHRETILAVSSPRDGYDYIWEVRAGETDEADLIATASGAEAVVTLTVLDENMITVKEVHPDGEIVRQLDEMVMVKYVRREIRTLTDEE 208          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig855.19951.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
A0A6H5JY30_9PHAE2.050e-4157.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRR4_9PHAE2.590e-3960.33TYR protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0... [more]
A0A6H5K485_9PHAE4.890e-3858.68TYR protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
A0A6H5J7R8_9PHAE3.730e-3656.56TYR protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
D7FW00_ECTSI5.260e-3556.20Ortho-aminophenol oxidase n=1 Tax=Ectocarpus silic... [more]
D8LC28_ECTSI3.800e-3459.06TYRosinase family member (Tyr-4) n=1 Tax=Ectocarpu... [more]
D8LC42_ECTSI4.160e-3453.68TYRosinase family member (Tyr-4) n=1 Tax=Ectocarpu... [more]
A0A6H5J676_9PHAE1.540e-3155.93TYR protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0... [more]
D8LC46_ECTSI1.890e-3053.39Tyrosinase_Cu-bd domain-containing protein n=3 Tax... [more]
D7G9A4_ECTSI4.250e-2758.59Ortho-aminophenol oxidase n=1 Tax=Ectocarpus silic... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig855contigF-serratus_M_contig855:309538..309902 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size366
Cds size357
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932518.4923015-UTR-F-serratus_M_contig855:309537..3095451622932518.4923015-UTR-F-serratus_M_contig855:309537..309545Fucus serratus maleUTRF-serratus_M_contig855 309538..309545 +
1690964347.2964153-UTR-F-serratus_M_contig855:309537..3095451690964347.2964153-UTR-F-serratus_M_contig855:309537..309545Fucus serratus maleUTRF-serratus_M_contig855 309538..309545 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932518.5138056-CDS-F-serratus_M_contig855:309545..3099021622932518.5138056-CDS-F-serratus_M_contig855:309545..309902Fucus serratus maleCDSF-serratus_M_contig855 309546..309902 +
1690964347.3081443-CDS-F-serratus_M_contig855:309545..3099021690964347.3081443-CDS-F-serratus_M_contig855:309545..309902Fucus serratus maleCDSF-serratus_M_contig855 309546..309902 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig855.19951.1prot_F-serratus_M_contig855.19951.1Fucus serratus malepolypeptideF-serratus_M_contig855 309546..309902 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig855.19951.1

>prot_F-serratus_M_contig855.19951.1 ID=prot_F-serratus_M_contig855.19951.1|Name=mRNA_F-serratus_M_contig855.19951.1|organism=Fucus serratus male|type=polypeptide|length=119bp
MAPLEFSALNYYHVRDGQPGQAYPWLKKMKVIEPHRETILTVTNPSEGLE
YRWILRVDETDEIQASASGTEVAVVLTQLNEHVITLQEVNSAGLVIRHLE
EIVMVKYVRREIRTLTDVE
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mRNA from alignment at F-serratus_M_contig855:309538..309902+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig855.19951.1 ID=mRNA_F-serratus_M_contig855.19951.1|Name=mRNA_F-serratus_M_contig855.19951.1|organism=Fucus serratus male|type=mRNA|length=365bp|location=Sequence derived from alignment at F-serratus_M_contig855:309538..309902+ (Fucus serratus male)
CGGCGTCAATGGCCCCGCTCGAGTTCAGCGCACTCAATTATTATCATGTC CGAGACGGTCAACCCGGCCAGGCTTATCCCTGGCTCAAGAAGATGAAGGT GATAGAACCACACCGCGAGACCATCCTCACGGTCACAAACCCGTCTGAGG GGCTTGAGTACCGGTGGATTCTGCGCGTGGATGAAACGGACGAGATCCAG GCATCAGCCAGCGGCACAGAAGTCGCTGTAGTCCTCACACAGCTCAATGA GCACGTGATCACTCTCCAAGAAGTGAACTCTGCAGGGCTGGTTATCAGGC ATCTGGAAGAAATAGTGATGGTCAAGTACGTCCGCAGAGAGATCAGAACT CTCACAGACGTTGAA
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Coding sequence (CDS) from alignment at F-serratus_M_contig855:309538..309902+

>mRNA_F-serratus_M_contig855.19951.1 ID=mRNA_F-serratus_M_contig855.19951.1|Name=mRNA_F-serratus_M_contig855.19951.1|organism=Fucus serratus male|type=CDS|length=714bp|location=Sequence derived from alignment at F-serratus_M_contig855:309538..309902+ (Fucus serratus male)
ATGGCCCCGCTCGAGTTCAGCGCACTCAATTATTATCATGTCCGAGACGG
TCAACCCGGCCAGGCTTATCCCTGGCTCAAGAAGATGAAGGTGATAGAAC
CACACCGCGAGACCATCCTCACGGTCACAAACCCGTCTGAGGGGCTTGAG
TACCGGTGGATTCTGCGCGTGGATGAAACGGACGAGATCCAGGCATCAGC
CAGCGGCACAGAAGTCGCTGTAGTCCTCACACAGCTCAATGAGCACGTGA
TCACTCTCCAAGAAGTGAACTCTGCAGGGCTGGTTATCAGGCATCTGGAA
GAAATAGTGATGGTCAAGTACGTCCGCAGAGAGATCAGAACTCTCACAGA
CGTTGAAATGGCCCCGCTCGAGTTCAGCGCACTCAATTATTATCATGTCC
GAGACGGTCAACCCGGCCAGGCTTATCCCTGGCTCAAGAAGATGAAGGTG
ATAGAACCACACCGCGAGACCATCCTCACGGTCACAAACCCGTCTGAGGG
GCTTGAGTACCGGTGGATTCTGCGCGTGGATGAAACGGACGAGATCCAGG
CATCAGCCAGCGGCACAGAAGTCGCTGTAGTCCTCACACAGCTCAATGAG
CACGTGATCACTCTCCAAGAAGTGAACTCTGCAGGGCTGGTTATCAGGCA
TCTGGAAGAAATAGTGATGGTCAAGTACGTCCGCAGAGAGATCAGAACTC
TCACAGACGTTGAA
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