mRNA_F-serratus_M_contig855.19950.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig855.19950.1
Unique NamemRNA_F-serratus_M_contig855.19950.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig855.19950.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig855contigF-serratus_M_contig855:222633..223259 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size627
Cds size339
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig855.19950.1prot_F-serratus_M_contig855.19950.1Fucus serratus malepolypeptideF-serratus_M_contig855 222642..222980 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932515.5814197-UTR-F-serratus_M_contig855:222632..2226411622932515.5814197-UTR-F-serratus_M_contig855:222632..222641Fucus serratus maleUTRF-serratus_M_contig855 222633..222641 +
1690964345.8107076-UTR-F-serratus_M_contig855:222632..2226411690964345.8107076-UTR-F-serratus_M_contig855:222632..222641Fucus serratus maleUTRF-serratus_M_contig855 222633..222641 +
1622932515.61826-UTR-F-serratus_M_contig855:222980..2232591622932515.61826-UTR-F-serratus_M_contig855:222980..223259Fucus serratus maleUTRF-serratus_M_contig855 222981..223259 +
1690964345.8306692-UTR-F-serratus_M_contig855:222980..2232591690964345.8306692-UTR-F-serratus_M_contig855:222980..223259Fucus serratus maleUTRF-serratus_M_contig855 222981..223259 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932515.5989304-CDS-F-serratus_M_contig855:222641..2229801622932515.5989304-CDS-F-serratus_M_contig855:222641..222980Fucus serratus maleCDSF-serratus_M_contig855 222642..222980 +
1690964345.8212705-CDS-F-serratus_M_contig855:222641..2229801690964345.8212705-CDS-F-serratus_M_contig855:222641..222980Fucus serratus maleCDSF-serratus_M_contig855 222642..222980 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig855.19950.1

>prot_F-serratus_M_contig855.19950.1 ID=prot_F-serratus_M_contig855.19950.1|Name=mRNA_F-serratus_M_contig855.19950.1|organism=Fucus serratus male|type=polypeptide|length=113bp
MAKRDFDDIIYDELAQEFNANKPPSKTVRFNIPKKEEPHNTVKFTVLMKK
PTTTASAPQPVVGNNKVLSKSQKRRLRRKKAKELHQHQPPNQGLTQLGHA
PNAPQIVINLGT*
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mRNA from alignment at F-serratus_M_contig855:222633..223259+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig855.19950.1 ID=mRNA_F-serratus_M_contig855.19950.1|Name=mRNA_F-serratus_M_contig855.19950.1|organism=Fucus serratus male|type=mRNA|length=627bp|location=Sequence derived from alignment at F-serratus_M_contig855:222633..223259+ (Fucus serratus male)
CAGATACAAATGGCGAAGCGCGATTTTGACGATATCATATATGACGAGCT
TGCTCAAGAATTCAACGCCAACAAACCACCAAGCAAGACAGTACGATTCA
ACATACCTAAGAAGGAGGAGCCGCACAACACTGTGAAATTCACAGTACTG
ATGAAAAAACCCACAACGACCGCAAGCGCCCCACAACCTGTGGTCGGGAA
TAACAAGGTTCTTTCCAAAAGCCAAAAGCGGAGGCTACGGCGGAAAAAAG
CGAAAGAACTCCATCAGCATCAACCCCCCAACCAAGGCCTCACGCAACTG
GGCCACGCGCCCAATGCGCCACAGATAGTTATCAATCTGGGGACATAGCA
CATAAGGGTAACTACAGGCAGTTGCACGCCCTGCGGCAGTGGTTTGAAAT
ACACCGGGCAACTGGGTAGACCCCTGCAGTTTTCTTCATTTACTCCCGGG
TACATTATATAGTGAAGGCACTACTGCGATCTTTTCTTTGATGTTTCCTT
TCTTGCCCCTCCGTTCCTTCCTGCGCAAGCATATCACAACACCGTCCCCA
GTGCCATGTGTCCACCTCATCCTTGATGCGGTTCACAatttTTTTTTCTC
TTTCTTTCGTTCTGCCTTTGTTCCCCT
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Coding sequence (CDS) from alignment at F-serratus_M_contig855:222633..223259+

>mRNA_F-serratus_M_contig855.19950.1 ID=mRNA_F-serratus_M_contig855.19950.1|Name=mRNA_F-serratus_M_contig855.19950.1|organism=Fucus serratus male|type=CDS|length=678bp|location=Sequence derived from alignment at F-serratus_M_contig855:222633..223259+ (Fucus serratus male)
ATGGCGAAGCGCGATTTTGACGATATCATATATGACGAGCTTGCTCAAGA
ATTCAACGCCAACAAACCACCAAGCAAGACAGTACGATTCAACATACCTA
AGAAGGAGGAGCCGCACAACACTGTGAAATTCACAGTACTGATGAAAAAA
CCCACAACGACCGCAAGCGCCCCACAACCTGTGGTCGGGAATAACAAGGT
TCTTTCCAAAAGCCAAAAGCGGAGGCTACGGCGGAAAAAAGCGAAAGAAC
TCCATCAGCATCAACCCCCCAACCAAGGCCTCACGCAACTGGGCCACGCG
CCCAATGCGCCACAGATAGTTATCAATCTGGGGACATAGATGGCGAAGCG
CGATTTTGACGATATCATATATGACGAGCTTGCTCAAGAATTCAACGCCA
ACAAACCACCAAGCAAGACAGTACGATTCAACATACCTAAGAAGGAGGAG
CCGCACAACACTGTGAAATTCACAGTACTGATGAAAAAACCCACAACGAC
CGCAAGCGCCCCACAACCTGTGGTCGGGAATAACAAGGTTCTTTCCAAAA
GCCAAAAGCGGAGGCTACGGCGGAAAAAAGCGAAAGAACTCCATCAGCAT
CAACCCCCCAACCAAGGCCTCACGCAACTGGGCCACGCGCCCAATGCGCC
ACAGATAGTTATCAATCTGGGGACATAG
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