mRNA_F-serratus_M_contig8531.19938.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig8531.19938.1
Unique NamemRNA_F-serratus_M_contig8531.19938.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig8531.19938.1 vs. uniprot
Match: A0A6H5LA89_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LA89_9PHAE)

HSP 1 Score: 80.5 bits (197), Expect = 2.990e-15
Identity = 42/117 (35.90%), Postives = 70/117 (59.83%), Query Frame = 1 
Query:    4 VGYPLVEAKMQEAKSPSGAWKALQDFYMPKTIAEKRRVARELESIKMVDDEDPVEYFGRIDKALQKLALLGGQKDEDDVNVHIIENLSSKYFVEKKILLSRQGITRAEIDELIRSAY 354
            VG P  E  +    S +GAW+ ++D+Y+P   A+ + +  EL++I M DDEDP  +F R+ +   KL  +G  K E +V   ++  L ++Y VEK+  LS + +TRAE+ +++R  Y
Sbjct:  173 VGAPF-ENNLYSCHSVAGAWRMMEDWYLPNHPADCQLLVAELDNITMSDDEDPKLFFSRVAQLETKLRAVGIAKSEQEVVRILVRQLPARYDVEKRTSLSNRDLTRAELQDVVRGRY 288
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BLAST of mRNA_F-serratus_M_contig8531.19938.1 vs. uniprot
Match: A0A6H5K4K8_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4K8_9PHAE)

HSP 1 Score: 65.5 bits (158), Expect = 1.750e-10
Identity = 33/112 (29.46%), Postives = 63/112 (56.25%), Query Frame = 1 
Query:   19 VEAKMQEAKSPSGAWKALQDFYMPKTIAEKRRVARELESIKMVDDEDPVEYFGRIDKALQKLALLGGQKDEDDVNVHIIENLSSKYFVEKKILLSRQGITRAEIDELIRSAY 354
            +E ++        AW  + ++ +P   AEK  + R LE+I+M   EDP  +F R+D  +  +  +G +K E  +   I+  L+ +Y +E+K +L    I+RA+++ ++R+AY
Sbjct:   10 IEERLGACDCVPEAWSVIHEWLLPTLDAEKTLLVRRLETIEMHPGEDPKLFFARVDGVINIMKAVGIEKSERAIVHIIVRQLAHEYDIERKSILVDPTISRAKVENVVRTAY 121
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig8531.19938.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5LA89_9PHAE2.990e-1535.90Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K4K8_9PHAE1.750e-1029.46Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig8531contigF-serratus_M_contig8531:5325..5687 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size363
Cds size363
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932514.7392566-CDS-F-serratus_M_contig8531:5324..56871622932514.7392566-CDS-F-serratus_M_contig8531:5324..5687Fucus serratus maleCDSF-serratus_M_contig8531 5325..5687 -
1690964345.3890507-CDS-F-serratus_M_contig8531:5324..56871690964345.3890507-CDS-F-serratus_M_contig8531:5324..5687Fucus serratus maleCDSF-serratus_M_contig8531 5325..5687 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig8531.19938.1prot_F-serratus_M_contig8531.19938.1Fucus serratus malepolypeptideF-serratus_M_contig8531 5325..5687 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig8531.19938.1

>prot_F-serratus_M_contig8531.19938.1 ID=prot_F-serratus_M_contig8531.19938.1|Name=mRNA_F-serratus_M_contig8531.19938.1|organism=Fucus serratus male|type=polypeptide|length=121bp
MVGYPLVEAKMQEAKSPSGAWKALQDFYMPKTIAEKRRVARELESIKMVD
DEDPVEYFGRIDKALQKLALLGGQKDEDDVNVHIIENLSSKYFVEKKILL
SRQGITRAEIDELIRSAYMSD
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mRNA from alignment at F-serratus_M_contig8531:5325..5687-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig8531.19938.1 ID=mRNA_F-serratus_M_contig8531.19938.1|Name=mRNA_F-serratus_M_contig8531.19938.1|organism=Fucus serratus male|type=mRNA|length=363bp|location=Sequence derived from alignment at F-serratus_M_contig8531:5325..5687- (Fucus serratus male)
ATGGTCGGCTACCCTCTCGTAGAGGCAAAAATGCAGGAGGCAAAATCGCC
GAGCGGTGCCTGGAAGGCACTGCAAGACTTCTACATGCCCAAAACGATCG
CAGAGAAACGCAGGGTTGCACGGGAGTTGGAGTCAATAAAGATGGTAGAT
GATGAAGACCCTGTAGAATACTTTGGACGTATCGACAAGGCTCTGCAAAA
ACTGGCTTTGCTCGGAGGCCAGAAGGACGAGGATGATGTGAACGTGCATA
TTATCGAAAATTTGTCCTCGAAGTATTTCGTGGAGAAAAAGATCCTCCTT
TCCCGCCAAGGCATTACGAGAGCAGAAATCGATGAGCTCATTCGCAGTGC
CTACATGTCCGAC
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Coding sequence (CDS) from alignment at F-serratus_M_contig8531:5325..5687-

>mRNA_F-serratus_M_contig8531.19938.1 ID=mRNA_F-serratus_M_contig8531.19938.1|Name=mRNA_F-serratus_M_contig8531.19938.1|organism=Fucus serratus male|type=CDS|length=726bp|location=Sequence derived from alignment at F-serratus_M_contig8531:5325..5687- (Fucus serratus male)
ATGGTCGGCTACCCTCTCGTAGAGGCAAAAATGCAGGAGGCAAAATCGCC
GAGCGGTGCCTGGAAGGCACTGCAAGACTTCTACATGCCCAAAACGATCG
CAGAGAAACGCAGGGTTGCACGGGAGTTGGAGTCAATAAAGATGGTAGAT
GATGAAGACCCTGTAGAATACTTTGGACGTATCGACAAGGCTCTGCAAAA
ACTGGCTTTGCTCGGAGGCCAGAAGGACGAGGATGATGTGAACGTGCATA
TTATCGAAAATTTGTCCTCGAAGTATTTCGTGGAGAAAAAGATCCTCCTT
TCCCGCCAAGGCATTACGAGAGCAGAAATCGATGAGCTCATTCGCAGTGC
CTACATGTCCGACATGGTCGGCTACCCTCTCGTAGAGGCAAAAATGCAGG
AGGCAAAATCGCCGAGCGGTGCCTGGAAGGCACTGCAAGACTTCTACATG
CCCAAAACGATCGCAGAGAAACGCAGGGTTGCACGGGAGTTGGAGTCAAT
AAAGATGGTAGATGATGAAGACCCTGTAGAATACTTTGGACGTATCGACA
AGGCTCTGCAAAAACTGGCTTTGCTCGGAGGCCAGAAGGACGAGGATGAT
GTGAACGTGCATATTATCGAAAATTTGTCCTCGAAGTATTTCGTGGAGAA
AAAGATCCTCCTTTCCCGCCAAGGCATTACGAGAGCAGAAATCGATGAGC
TCATTCGCAGTGCCTACATGTCCGAC
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