mRNA_F-serratus_M_contig852.19916.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig852.19916.1
Unique NamemRNA_F-serratus_M_contig852.19916.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig852.19916.1 vs. uniprot
Match: PRXV_ASCNO (Vanadium-dependent bromoperoxidase n=1 Tax=Ascophyllum nodosum TaxID=52969 RepID=PRXV_ASCNO)

HSP 1 Score: 137 bits (344), Expect = 2.770e-36
Identity = 68/75 (90.67%), Postives = 69/75 (92.00%), Query Frame = 3 
Query:    6 ANLAGMEGFPNLVGVSIESDGTVDPFSQLFRANFVGVETGPFVSQLLVNSFTIDSITVEPKQETFAPGVNYMVDF 230
            ANLAGMEGFPNL  VSI SDGTVDP SQLFRA FVGVETGPF+SQLLVNSFTIDSITVEPKQETFAP VNYMVDF
Sbjct:  166 ANLAGMEGFPNLDAVSIGSDGTVDPLSQLFRATFVGVETGPFISQLLVNSFTIDSITVEPKQETFAPDVNYMVDF 240
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BLAST of mRNA_F-serratus_M_contig852.19916.1 vs. uniprot
Match: O82433_FUCDI (Vanadium bromoperoxidase n=1 Tax=Fucus distichus TaxID=3012 RepID=O82433_FUCDI)

HSP 1 Score: 134 bits (338), Expect = 3.930e-35
Identity = 67/75 (89.33%), Postives = 69/75 (92.00%), Query Frame = 3 
Query:    6 ANLAGMEGFPNLVGVSIESDGTVDPFSQLFRANFVGVETGPFVSQLLVNSFTIDSITVEPKQETFAPGVNYMVDF 230
            ANLAGM GFPNL  VSI SDGTVDPFSQLFRA FVGVETGPFVSQLLVNSFTID+ITVEPKQETFAP +NYMVDF
Sbjct:  285 ANLAGMGGFPNLDAVSIGSDGTVDPFSQLFRATFVGVETGPFVSQLLVNSFTIDAITVEPKQETFAPDLNYMVDF 359
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BLAST of mRNA_F-serratus_M_contig852.19916.1 vs. uniprot
Match: B7ZGM6_9PHAE (Putative vanadium-dependent iodoperoxidase 3 n=1 Tax=Laminaria digitata TaxID=80365 RepID=B7ZGM6_9PHAE)

HSP 1 Score: 102 bits (253), Expect = 1.490e-23
Identity = 48/74 (64.86%), Postives = 57/74 (77.03%), Query Frame = 3 
Query:    9 NLAGMEGFPNLVGVSIESDGTVDPFSQLFRANFVGVETGPFVSQLLVNSFTIDSITVEPKQETFAPGVNYMVDF 230
            NLA M GF N+VGV+++ DG  DP SQLFR +  GVETGPF+SQLLV  FTIDSITV P Q+TF PG +YM D+
Sbjct:  221 NLATMPGFQNMVGVAVDRDGRADPQSQLFRTSAFGVETGPFISQLLVQDFTIDSITVAPIQKTFEPGADYMADY 294
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BLAST of mRNA_F-serratus_M_contig852.19916.1 vs. uniprot
Match: A0A3G3BM28_SACJA (Vanadium-dependent iodine peroxidase n=1 Tax=Saccharina japonica TaxID=88149 RepID=A0A3G3BM28_SACJA)

HSP 1 Score: 96.7 bits (239), Expect = 1.200e-21
Identity = 48/75 (64.00%), Postives = 59/75 (78.67%), Query Frame = 3 
Query:    6 ANLAGMEGFPNLVGVSIESDGTVDPFSQLFRANFVGVETGPFVSQLLVNSFTIDSITVEPKQETFAPGVNYMVDF 230
            A+LA M GF +L  V++  DG+ DP +QLFR++ VGVE GP VSQLLVN+FTIDSITVE KQ TFAPG +YM +F
Sbjct:  214 ASLAAMPGFADLNFVAVGPDGSPDPLTQLFRSSAVGVEIGPHVSQLLVNNFTIDSITVEAKQNTFAPGEDYMAEF 288
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BLAST of mRNA_F-serratus_M_contig852.19916.1 vs. uniprot
Match: Q4LDE6_9PHAE (Vanadium-dependent iodoperoxidase 1 n=1 Tax=Laminaria digitata TaxID=80365 RepID=Q4LDE6_9PHAE)

HSP 1 Score: 94.0 bits (232), Expect = 1.060e-20
Identity = 46/75 (61.33%), Postives = 58/75 (77.33%), Query Frame = 3 
Query:    9 NLAGMEGFPNLVGVSIESDGT-VDPFSQLFRANFVGVETGPFVSQLLVNSFTIDSITVEPKQETFAPGVNYMVDF 230
            NLA M GF ++VGV+++ +    DP SQLFR++  GVETGPF+SQLLV  FTIDSITV P Q+TFAPG +YM D+
Sbjct:  221 NLATMPGFADIVGVAVDPETRRADPQSQLFRSSAFGVETGPFISQLLVKDFTIDSITVTPMQKTFAPGADYMTDY 295
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig852.19916.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
PRXV_ASCNO2.770e-3690.67Vanadium-dependent bromoperoxidase n=1 Tax=Ascophy... [more]
O82433_FUCDI3.930e-3589.33Vanadium bromoperoxidase n=1 Tax=Fucus distichus T... [more]
B7ZGM6_9PHAE1.490e-2364.86Putative vanadium-dependent iodoperoxidase 3 n=1 T... [more]
A0A3G3BM28_SACJA1.200e-2164.00Vanadium-dependent iodine peroxidase n=1 Tax=Sacch... [more]
Q4LDE6_9PHAE1.060e-2061.33Vanadium-dependent iodoperoxidase 1 n=1 Tax=Lamina... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig852contigF-serratus_M_contig852:187807..188199 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score62.4
Seed ortholog evalue9.8e-08
Seed eggNOG ortholog2880.D8LTP5
Hectar predicted targeting categoryother localisation
EggNOG OGs2EKT6@1,2SQKZ@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size230
Cds size210
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig852.19916.1prot_F-serratus_M_contig852.19916.1Fucus serratus malepolypeptideF-serratus_M_contig852 187827..188199 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932509.136514-UTR-F-serratus_M_contig852:187806..1878261622932509.136514-UTR-F-serratus_M_contig852:187806..187826Fucus serratus maleUTRF-serratus_M_contig852 187807..187826 +
1690964343.084636-UTR-F-serratus_M_contig852:187806..1878261690964343.084636-UTR-F-serratus_M_contig852:187806..187826Fucus serratus maleUTRF-serratus_M_contig852 187807..187826 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932509.1629426-CDS-F-serratus_M_contig852:187826..1879461622932509.1629426-CDS-F-serratus_M_contig852:187826..187946Fucus serratus maleCDSF-serratus_M_contig852 187827..187946 +
1690964343.095163-CDS-F-serratus_M_contig852:187826..1879461690964343.095163-CDS-F-serratus_M_contig852:187826..187946Fucus serratus maleCDSF-serratus_M_contig852 187827..187946 +
1622932509.193977-CDS-F-serratus_M_contig852:188109..1881991622932509.193977-CDS-F-serratus_M_contig852:188109..188199Fucus serratus maleCDSF-serratus_M_contig852 188110..188199 +
1690964343.1100047-CDS-F-serratus_M_contig852:188109..1881991690964343.1100047-CDS-F-serratus_M_contig852:188109..188199Fucus serratus maleCDSF-serratus_M_contig852 188110..188199 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig852.19916.1

>prot_F-serratus_M_contig852.19916.1 ID=prot_F-serratus_M_contig852.19916.1|Name=mRNA_F-serratus_M_contig852.19916.1|organism=Fucus serratus male|type=polypeptide|length=70bp
MEGFPNLVGVSIESDGTVDPFSQLFRANFVGVETGPFVSQLLVNSFTIDS
ITVEPKQETFAPGVNYMVDF
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mRNA from alignment at F-serratus_M_contig852:187807..188199+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig852.19916.1 ID=mRNA_F-serratus_M_contig852.19916.1|Name=mRNA_F-serratus_M_contig852.19916.1|organism=Fucus serratus male|type=mRNA|length=393bp|location=Sequence derived from alignment at F-serratus_M_contig852:187807..188199+ (Fucus serratus male)
CTGAAGCCAACCTCGCTGGAATGGAAGGCTTCCCGAACCTGGTCGGCGTC
TCGATAGAGTCCGATGGCACGGTGGACCCATTCTCCCAGCTTTTTCGGGC
GAACTTCGTTGGCGTTGAAACGGGACCCTTTGTCTCTCAGGTGCCGTAAT
GTACGGCTGAGAAGACTAAACTTCATATTTCGTTAAAGTATATCTACACG
ACAATTTACCCTTTAAATGTAAAGACTGAATGCTCGCATTTACCAATGCT
CCTCTTTCCCTCCCTTGTTGATGTCTGCTTGACGTACGACACGTGTTTAA
CAGCTGCTCGTGAACAGCTTCACCATCGACTCTATTACGGTCGAACCGAA
GCAGGAGACATTTGCTCCCGGCGTGAACTACATGGTCGATTTT
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Coding sequence (CDS) from alignment at F-serratus_M_contig852:187807..188199+

>mRNA_F-serratus_M_contig852.19916.1 ID=mRNA_F-serratus_M_contig852.19916.1|Name=mRNA_F-serratus_M_contig852.19916.1|organism=Fucus serratus male|type=CDS|length=420bp|location=Sequence derived from alignment at F-serratus_M_contig852:187807..188199+ (Fucus serratus male)
ATGGAAGGCTTCCCGAACCTGGTCGGCGTCTCGATAGAGTCCGATGGCAC
GGTGGACCCATTCTCCCAGCTTTTTCGGGCGAACTTCGTTGGCGTTGAAA
CGGGACCCTTTGTCTCTCAGATGGAAGGCTTCCCGAACCTGGTCGGCGTC
TCGATAGAGTCCGATGGCACGGTGGACCCATTCTCCCAGCTTTTTCGGGC
GAACTTCGTTGGCGTTGAAACGGGACCCTTTGTCTCTCAGCTGCTCGTGA
ACAGCTTCACCATCGACTCTATTACGGTCGAACCGAAGCAGGAGACATTT
GCTCCCGGCGTGAACTACATGGTCGATTTTCTGCTCGTGAACAGCTTCAC
CATCGACTCTATTACGGTCGAACCGAAGCAGGAGACATTTGCTCCCGGCG
TGAACTACATGGTCGATTTT
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