mRNA_F-serratus_M_contig851.19907.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig851.19907.1
Unique NamemRNA_F-serratus_M_contig851.19907.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig851.19907.1 vs. uniprot
Match: D7FH74_ECTSI (Cyclin N-terminal domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH74_ECTSI)

HSP 1 Score: 114 bits (284), Expect = 3.340e-28
Identity = 51/94 (54.26%), Postives = 71/94 (75.53%), Query Frame = 1 
Query:    1 IEEVHDFLVNFFVQLLLGNECSVVCLIYVERLMALARVPLLGSNWKPILLCACLLASKMWKGLSPWNLDFAAICPEYTAKKINKLEAEFLRALE 282
            ++E+++F+   F +  L +ECS+VCLIYVERLM  ARVPLL   WKP+LLC  LLASK+W+ LS WN++F+ + PEY+ K IN+LE  FL A++
Sbjct:  173 VDEIYEFIKTLFNKAQLSSECSLVCLIYVERLMETARVPLLPGTWKPVLLCGLLLASKVWQDLSSWNVEFSTVYPEYSLKNINRLELLFLGAMK 266
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BLAST of mRNA_F-serratus_M_contig851.19907.1 vs. uniprot
Match: A0A1E7FWS6_9STRA (Uncharacterized protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FWS6_9STRA)

HSP 1 Score: 111 bits (278), Expect = 1.520e-27
Identity = 48/89 (53.93%), Postives = 68/89 (76.40%), Query Frame = 1 
Query:    7 EVHDFLVNFFVQLLLGNECSVVCLIYVERLMALARVPLLGSNWKPILLCACLLASKMWKGLSPWNLDFAAICPEYTAKKINKLEAEFLR 273
            E++DF    F  + L +ECS+VCLIYVERLM +A+VPLL   W+PI +CA LLASK+W+ LS WN++F+++ P+++ + INKLE  FLR
Sbjct:  148 EIYDFAQQLFQSVQLSSECSIVCLIYVERLMEIAKVPLLACTWRPIFMCALLLASKVWQDLSSWNIEFSSVYPQFSLESINKLELNFLR 236
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BLAST of mRNA_F-serratus_M_contig851.19907.1 vs. uniprot
Match: A0A6H5JJI4_9PHAE (Cyclin N-terminal domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJI4_9PHAE)

HSP 1 Score: 114 bits (284), Expect = 3.540e-27
Identity = 51/94 (54.26%), Postives = 71/94 (75.53%), Query Frame = 1 
Query:    1 IEEVHDFLVNFFVQLLLGNECSVVCLIYVERLMALARVPLLGSNWKPILLCACLLASKMWKGLSPWNLDFAAICPEYTAKKINKLEAEFLRALE 282
            ++E+++F+   F +  L +ECS+VCLIYVERLM  ARVPLL   WKP+LLC  LLASK+W+ LS WN++F+ + PEY+ K IN+LE  FL A++
Sbjct:  421 VDEIYEFIKTLFNKAQLSSECSLVCLIYVERLMETARVPLLPGTWKPVLLCGLLLASKVWQDLSSWNVEFSTVYPEYSLKSINRLELLFLGAMK 514
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BLAST of mRNA_F-serratus_M_contig851.19907.1 vs. uniprot
Match: A0A7S1G1W2_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1G1W2_9STRA)

HSP 1 Score: 107 bits (266), Expect = 3.660e-27
Identity = 46/92 (50.00%), Postives = 69/92 (75.00%), Query Frame = 1 
Query:    4 EEVHDFLVNFFVQLLLGNECSVVCLIYVERLMALARVPLLGSNWKPILLCACLLASKMWKGLSPWNLDFAAICPEYTAKKINKLEAEFLRAL 279
            EE+++F  + F +  L  ECS+VCL+YVERLM +A + LLG+NW+PILLC  L+ASK+W+ LS WN++F+ + P+Y+   +N+LE  FL+ L
Sbjct:   12 EEIYNFARHLFTKAQLSAECSIVCLVYVERLMEVAGLLLLGTNWRPILLCGMLMASKVWQDLSSWNVEFSTVYPQYSLASVNRLERAFLQTL 103
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BLAST of mRNA_F-serratus_M_contig851.19907.1 vs. uniprot
Match: A0A7S3P0N5_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3P0N5_9STRA)

HSP 1 Score: 110 bits (276), Expect = 5.190e-26
Identity = 47/92 (51.09%), Postives = 70/92 (76.09%), Query Frame = 1 
Query:    7 EVHDFLVNFFVQLLLGNECSVVCLIYVERLMALARVPLLGSNWKPILLCACLLASKMWKGLSPWNLDFAAICPEYTAKKINKLEAEFLRALE 282
            E++DF    F  + L +ECS+VCLIY+ERLM +A+VPLL S W+PI++C  LLASK+W+ LS WN++FA + P+Y+   I++LE +FLR ++
Sbjct:  523 EIYDFAHRLFKSVQLSSECSIVCLIYIERLMEVAKVPLLASTWRPIVMCGLLLASKVWQDLSSWNIEFATVYPQYSLNAIHRLELQFLRMVK 614
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BLAST of mRNA_F-serratus_M_contig851.19907.1 vs. uniprot
Match: A0A7R9ZLS7_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9ZLS7_9STRA)

HSP 1 Score: 109 bits (272), Expect = 5.300e-26
Identity = 47/92 (51.09%), Postives = 69/92 (75.00%), Query Frame = 1 
Query:    7 EVHDFLVNFFVQLLLGNECSVVCLIYVERLMALARVPLLGSNWKPILLCACLLASKMWKGLSPWNLDFAAICPEYTAKKINKLEAEFLRALE 282
            E+++F    F  + L +ECS++CLIYVERLM +A+VPLL S W+PI +C  LLASK+W+ LS WN++FA++ P+++   INKLE  FLR ++
Sbjct:  311 EIYEFAHQLFDSVQLSSECSIICLIYVERLMEVAKVPLLASTWRPIFMCGLLLASKVWQDLSSWNVEFASVYPQFSVDAINKLELNFLRMVK 402
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BLAST of mRNA_F-serratus_M_contig851.19907.1 vs. uniprot
Match: F0Y4Y5_AURAN (Cyclin N-terminal domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y4Y5_AURAN)

HSP 1 Score: 102 bits (253), Expect = 9.500e-26
Identity = 44/93 (47.31%), Postives = 68/93 (73.12%), Query Frame = 1 
Query:    1 IEEVHDFLVNFFVQLLLGNECSVVCLIYVERLMALARVPLLGSNWKPILLCACLLASKMWKGLSPWNLDFAAICPEYTAKKINKLEAEFLRAL 279
            +++++ FL   FV+  L +ECS+VCLIYVERLM  A VPLL + W+PILLC+ LLASK+W+  + WN++F+ + P+++   IN LE  ++ A+
Sbjct:    3 MKDIYTFLSTLFVRAHLSSECSIVCLIYVERLMEKANVPLLAATWRPILLCSMLLASKVWQDCASWNIEFSVVFPQFSLAAINALERNYVTAV 95
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BLAST of mRNA_F-serratus_M_contig851.19907.1 vs. uniprot
Match: B7FR20_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7FR20_PHATC)

HSP 1 Score: 109 bits (273), Expect = 1.020e-25
Identity = 48/92 (52.17%), Postives = 69/92 (75.00%), Query Frame = 1 
Query:    7 EVHDFLVNFFVQLLLGNECSVVCLIYVERLMALARVPLLGSNWKPILLCACLLASKMWKGLSPWNLDFAAICPEYTAKKINKLEAEFLRALE 282
            E+++F    F  + L +ECS+VCLIY+ERLM LA+VPLL S W+PI +C  LLASK+W+ LS WN++FA++ P+Y+   IN+LE  FLR ++
Sbjct:  387 EIYEFGHQLFKTVQLSSECSIVCLIYIERLMELAKVPLLASTWRPIFMCGLLLASKVWQDLSSWNIEFASVYPQYSLSAINRLEHTFLRMIK 478
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BLAST of mRNA_F-serratus_M_contig851.19907.1 vs. uniprot
Match: A0A7S4J8M4_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4J8M4_9STRA)

HSP 1 Score: 109 bits (273), Expect = 1.400e-25
Identity = 46/92 (50.00%), Postives = 71/92 (77.17%), Query Frame = 1 
Query:    7 EVHDFLVNFFVQLLLGNECSVVCLIYVERLMALARVPLLGSNWKPILLCACLLASKMWKGLSPWNLDFAAICPEYTAKKINKLEAEFLRALE 282
            E+++F    F  + L +ECS+VCLIY+ERLM +ARVPL+ S W+P+ +C  LLASK+W+ LS WN++FA++ P+++ + IN+LEA FLR ++
Sbjct:  949 EIYEFGHRLFKSVQLSSECSIVCLIYIERLMEVARVPLVSSTWRPVFMCGLLLASKVWQDLSSWNIEFASVYPQFSLEAINRLEATFLRTVK 1040
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BLAST of mRNA_F-serratus_M_contig851.19907.1 vs. uniprot
Match: A0A7S3K4U9_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3K4U9_9STRA)

HSP 1 Score: 107 bits (268), Expect = 1.770e-25
Identity = 49/91 (53.85%), Postives = 69/91 (75.82%), Query Frame = 1 
Query:    7 EVHDFLVNFFVQLLLGNECSVVCLIYVERLMALARVPLLGSNWKPILLCACLLASKMWKGLSPWNLDFAAICPEYTAKKINKLEAEFLRAL 279
            +++DFLV  F +  L +ECS+VCLIY+ERLM   +V LL +NW+PI+LC+ LLASK+W+  + WN++FAAI PEY+   IN LE +F+ AL
Sbjct:  242 DIYDFLVELFERAHLSSECSIVCLIYIERLMDKGKVALLKNNWRPIVLCSMLLASKVWQDCASWNIEFAAIYPEYSLPAINLLERKFVSAL 332
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig851.19907.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FH74_ECTSI3.340e-2854.26Cyclin N-terminal domain-containing protein n=1 Ta... [more]
A0A1E7FWS6_9STRA1.520e-2753.93Uncharacterized protein n=1 Tax=Fragilariopsis cyl... [more]
A0A6H5JJI4_9PHAE3.540e-2754.26Cyclin N-terminal domain-containing protein n=1 Ta... [more]
A0A7S1G1W2_9STRA3.660e-2750.00Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
A0A7S3P0N5_9STRA5.190e-2651.09Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
A0A7R9ZLS7_9STRA5.300e-2651.09Hypothetical protein n=1 Tax=Craspedostauros austr... [more]
F0Y4Y5_AURAN9.500e-2647.31Cyclin N-terminal domain-containing protein (Fragm... [more]
B7FR20_PHATC1.020e-2552.17Predicted protein n=1 Tax=Phaeodactylum tricornutu... [more]
A0A7S4J8M4_9STRA1.400e-2550.00Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A7S3K4U9_9STRA1.770e-2553.85Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig851contigF-serratus_M_contig851:43305..44532 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score79.0
Seed ortholog evalue1.1e-12
Seed eggNOG ortholog2880.D7FH74
Hectar predicted targeting categoryother localisation
EggNOG free text desc.regulation of cyclin-dependent protein serine/threonine kinase activity
EggNOG OGsKOG1675@1,KOG1675@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons4
Model size341
Cds size234
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig851.19907.1prot_F-serratus_M_contig851.19907.1Fucus serratus malepolypeptideF-serratus_M_contig851 43777..44521 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932507.0161507-UTR-F-serratus_M_contig851:43304..433731622932507.0161507-UTR-F-serratus_M_contig851:43304..43373Fucus serratus maleUTRF-serratus_M_contig851 43305..43373 +
1690964342.1408124-UTR-F-serratus_M_contig851:43304..433731690964342.1408124-UTR-F-serratus_M_contig851:43304..43373Fucus serratus maleUTRF-serratus_M_contig851 43305..43373 +
1622932507.0420334-UTR-F-serratus_M_contig851:43749..437761622932507.0420334-UTR-F-serratus_M_contig851:43749..43776Fucus serratus maleUTRF-serratus_M_contig851 43750..43776 +
1690964342.1514122-UTR-F-serratus_M_contig851:43749..437761690964342.1514122-UTR-F-serratus_M_contig851:43749..43776Fucus serratus maleUTRF-serratus_M_contig851 43750..43776 +
1622932507.133999-UTR-F-serratus_M_contig851:44521..445321622932507.133999-UTR-F-serratus_M_contig851:44521..44532Fucus serratus maleUTRF-serratus_M_contig851 44522..44532 +
1690964342.1890757-UTR-F-serratus_M_contig851:44521..445321690964342.1890757-UTR-F-serratus_M_contig851:44521..44532Fucus serratus maleUTRF-serratus_M_contig851 44522..44532 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932507.0613613-CDS-F-serratus_M_contig851:43776..438541622932507.0613613-CDS-F-serratus_M_contig851:43776..43854Fucus serratus maleCDSF-serratus_M_contig851 43777..43854 +
1690964342.1597416-CDS-F-serratus_M_contig851:43776..438541690964342.1597416-CDS-F-serratus_M_contig851:43776..43854Fucus serratus maleCDSF-serratus_M_contig851 43777..43854 +
1622932507.084859-CDS-F-serratus_M_contig851:44228..443051622932507.084859-CDS-F-serratus_M_contig851:44228..44305Fucus serratus maleCDSF-serratus_M_contig851 44229..44305 +
1690964342.1725008-CDS-F-serratus_M_contig851:44228..443051690964342.1725008-CDS-F-serratus_M_contig851:44228..44305Fucus serratus maleCDSF-serratus_M_contig851 44229..44305 +
1622932507.1157367-CDS-F-serratus_M_contig851:44442..445211622932507.1157367-CDS-F-serratus_M_contig851:44442..44521Fucus serratus maleCDSF-serratus_M_contig851 44443..44521 +
1690964342.180847-CDS-F-serratus_M_contig851:44442..445211690964342.180847-CDS-F-serratus_M_contig851:44442..44521Fucus serratus maleCDSF-serratus_M_contig851 44443..44521 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig851.19907.1

>prot_F-serratus_M_contig851.19907.1 ID=prot_F-serratus_M_contig851.19907.1|Name=mRNA_F-serratus_M_contig851.19907.1|organism=Fucus serratus male|type=polypeptide|length=78bp
MALARVPLLGSNWKPILLCACLLASKMWKGLSPWNLDFAAICPEYTAKKI
NKLEAEFLRALETSAFQAACMRSTTLR*
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mRNA from alignment at F-serratus_M_contig851:43305..44532+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig851.19907.1 ID=mRNA_F-serratus_M_contig851.19907.1|Name=mRNA_F-serratus_M_contig851.19907.1|organism=Fucus serratus male|type=mRNA|length=1228bp|location=Sequence derived from alignment at F-serratus_M_contig851:43305..44532+ (Fucus serratus male)
ATCGAGGAAGTTCACGACTTCTTGGTGAACTTTTTCGTCCAACTGCTGCT
GGGCAACGAATGCTCAGTGGTACGTAATGCTGTAGTACAGTACGGGTACA
TTCATCCTAGTTTTCCTCCGATTTCCATATCAGGTAGAAGGAAGGCAGGC
AGGTATGCAGCGAGGAGGGGGGACGAAGTGGGTTCATCCCATATACCACT
GTAGAGATATCAGCATTGGGGTGGCAATGACCTCTACCGTTTCGGATCAA
AGACGGAATATGTGAGGCAGATACTCGAAGTATAGCATGCGCCTAGAGGG
TTATCTCATCGTATGTCTGCTGTCCTATTTAAGATAAAACCACCTATCTA
TAAGTCCCAAGGAAAGAAAGACCCCCCTCCCCCAACTTGCCTCCTCATTT
TCCTTCACCTGATCGGCGTCTTACCTCCCGTGGCTGGTCATTTAGGTCTG
CCTCATTTACGTGGAGCGTCTTATGGCGCTCGCTCGCGTGCCGCTTCTTG
GAAGCAATTGGAAGCCGATCCTTTTGTGTGCCTGTCTCCTTGCCTCCAAG
GTACGATACCTACTAGCTCTACTTTTTCAGCGTCAACACAACGAAGAGTA
AGACATACGAAGGTTTGACGGATCGAGACGCATGCGAAATCGTTCTCAAT
CAATTTATCTTGTCGTGTTGGTTTTTGCATCATTAACGATTGCATACGCG
GACACCTGGCTTTTTATCTCACTGATAAAGGACGGTGTTGCTTTTCAAGA
TTCCCCAGATTCACTCTCAATCAATTTATATTTTCGTGTGTTTTTTCTGC
ATCATTAACGGTCGCGTGCGCGGACTTGACTTTTTATCTCACTGATAAAG
GACCGTGCTGCTTTTTGAGATTCCCCAGATTAGAGATTCTGACCGAAAGC
TGTATACGCGGTTCCCTCCACCAGATGTGGAAAGGTCTGAGCCCCTGGAA
TCTGGATTTCGCAGCTATATGCCCCGAGTACACGGCGAAGAAGATTAACA
AGTAAGCTGTTTTCTGACGTCATGGGTGCAGAGGGAACTGTTAGGAAGGA
GACCATAGTTGTGAGTAAACGACTTTTCCGTCGTGACGGTTTCCTTTTCC
CCACCACTCTCCTTACCCCACCAATGCGCTGTTATCAGGTTGGAGGCGGA
ATTCCTCCGCGCTCTCGAGACCTCGGCGTTTCAAGCAGCTTGTATGCGAA
GTACTACTTTGCGCTGAGGTCTTTGTCA
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Coding sequence (CDS) from alignment at F-serratus_M_contig851:43305..44532+

>mRNA_F-serratus_M_contig851.19907.1 ID=mRNA_F-serratus_M_contig851.19907.1|Name=mRNA_F-serratus_M_contig851.19907.1|organism=Fucus serratus male|type=CDS|length=468bp|location=Sequence derived from alignment at F-serratus_M_contig851:43305..44532+ (Fucus serratus male)
ATGGCGCTCGCTCGCGTGCCGCTTCTTGGAAGCAATTGGAAGCCGATCCT
TTTGTGTGCCTGTCTCCTTGCCTCCAAGATGGCGCTCGCTCGCGTGCCGC
TTCTTGGAAGCAATTGGAAGCCGATCCTTTTGTGTGCCTGTCTCCTTGCC
TCCAAGATGTGGAAAGGTCTGAGCCCCTGGAATCTGGATTTCGCAGCTAT
ATGCCCCGAGTACACGGCGAAGAAGATTAACAAATGTGGAAAGGTCTGAG
CCCCTGGAATCTGGATTTCGCAGCTATATGCCCCGAGTACACGGCGAAGA
AGATTAACAAGTTGGAGGCGGAATTCCTCCGCGCTCTCGAGACCTCGGCG
TTTCAAGCAGCTTGTATGCGAAGTACTACTTTGCGCTGAGTTGGAGGCGG
AATTCCTCCGCGCTCTCGAGACCTCGGCGTTTCAAGCAGCTTGTATGCGA
AGTACTACTTTGCGCTGA
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