mRNA_F-serratus_M_contig85.19904.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig85.19904.1
Unique NamemRNA_F-serratus_M_contig85.19904.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig85.19904.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig85contigF-serratus_M_contig85:816772..817471 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size700
Cds size360
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932501.2777069-UTR-F-serratus_M_contig85:816771..8171111622932501.2777069-UTR-F-serratus_M_contig85:816771..817111Fucus serratus maleUTRF-serratus_M_contig85 816772..817111 +
1690964339.1490412-UTR-F-serratus_M_contig85:816771..8171111690964339.1490412-UTR-F-serratus_M_contig85:816771..817111Fucus serratus maleUTRF-serratus_M_contig85 816772..817111 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932501.295373-CDS-F-serratus_M_contig85:817111..8174711622932501.295373-CDS-F-serratus_M_contig85:817111..817471Fucus serratus maleCDSF-serratus_M_contig85 817112..817471 +
1690964339.1612785-CDS-F-serratus_M_contig85:817111..8174711690964339.1612785-CDS-F-serratus_M_contig85:817111..817471Fucus serratus maleCDSF-serratus_M_contig85 817112..817471 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig85.19904.1prot_F-serratus_M_contig85.19904.1Fucus serratus malepolypeptideF-serratus_M_contig85 817112..817471 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig85.19904.1

>prot_F-serratus_M_contig85.19904.1 ID=prot_F-serratus_M_contig85.19904.1|Name=mRNA_F-serratus_M_contig85.19904.1|organism=Fucus serratus male|type=polypeptide|length=120bp
MLELTLRGQRRRFKLNSQQYAEVDVFGESFYFIGRDLPRPSCMCSLLPRL
LQLRRSSTGDTTNYLWGELLYPYPLCFAYPLVASGNIIERESYGIIYIYP
GILYSSWTFPKTQNNQHKQ*
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mRNA from alignment at F-serratus_M_contig85:816772..817471+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig85.19904.1 ID=mRNA_F-serratus_M_contig85.19904.1|Name=mRNA_F-serratus_M_contig85.19904.1|organism=Fucus serratus male|type=mRNA|length=700bp|location=Sequence derived from alignment at F-serratus_M_contig85:816772..817471+ (Fucus serratus male)
TCGCTCCTGTTTCGTTGGGGGGGTCATTGGGGGCAGAGGGAGTAGTGTAC
CGTACATCAAACAGCAACGTCATTTAAATGCCATCAAAAGGGTTGGTCTT
TGCAGCCTATGATCCCACCTAAACGTTTTGATATTCTCCCCTCTGACTGG
GAGATGCTCAGACGGTCTAGATATGATCACTTTTTTTCTGAATAACCTAA
CTTTTTGTCAACCTTCCCCATGGGTGGTCATAGTTTTGTGAGGGCGCTTT
TAGTTTGGACCAGCCACACACTCGCAGGCGTACCATAATAATTTAGGTGA
GAGAGGGCGTGTATTATTGCTACGTGTGTAGGATGCTAGCATGCTAGAAT
TAACACTCCGAGGACAACGAAGGCGCTTCAAGCTGAATAGCCAGCAGTAC
GCAGAGGTGGATGTTTTTGGAGAGAGCTTCTACTTCATTGGAAGGGATCT
TCCCAGACCCTCGTGTATGTGTTCCTTGTTGCCCCGATTGCTGCAGTTGC
GGAGATCATCGACCGGGGACACCACCAACTATCTCTGGGGTGAATTATTA
TACCCTTATCCCTTGTGCTTCGCGTACCCTCTTGTCGCCTCCGGAAATAT
AATAGAGAGAGAGAGCTATGGCATTATATATATATATCCTGGTATACTGT
ATAGCTCGTGGACTTTCCCCAAAACACAAAATAATCAACATAAACAATAA
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Coding sequence (CDS) from alignment at F-serratus_M_contig85:816772..817471+

>mRNA_F-serratus_M_contig85.19904.1 ID=mRNA_F-serratus_M_contig85.19904.1|Name=mRNA_F-serratus_M_contig85.19904.1|organism=Fucus serratus male|type=CDS|length=720bp|location=Sequence derived from alignment at F-serratus_M_contig85:816772..817471+ (Fucus serratus male)
ATGCTAGAATTAACACTCCGAGGACAACGAAGGCGCTTCAAGCTGAATAG
CCAGCAGTACGCAGAGGTGGATGTTTTTGGAGAGAGCTTCTACTTCATTG
GAAGGGATCTTCCCAGACCCTCGTGTATGTGTTCCTTGTTGCCCCGATTG
CTGCAGTTGCGGAGATCATCGACCGGGGACACCACCAACTATCTCTGGGG
TGAATTATTATACCCTTATCCCTTGTGCTTCGCGTACCCTCTTGTCGCCT
CCGGAAATATAATAGAGAGAGAGAGCTATGGCATTATATATATATATCCT
GGTATACTGTATAGCTCGTGGACTTTCCCCAAAACACAAAATAATCAACA
TAAACAATAAATGCTAGAATTAACACTCCGAGGACAACGAAGGCGCTTCA
AGCTGAATAGCCAGCAGTACGCAGAGGTGGATGTTTTTGGAGAGAGCTTC
TACTTCATTGGAAGGGATCTTCCCAGACCCTCGTGTATGTGTTCCTTGTT
GCCCCGATTGCTGCAGTTGCGGAGATCATCGACCGGGGACACCACCAACT
ATCTCTGGGGTGAATTATTATACCCTTATCCCTTGTGCTTCGCGTACCCT
CTTGTCGCCTCCGGAAATATAATAGAGAGAGAGAGCTATGGCATTATATA
TATATATCCTGGTATACTGTATAGCTCGTGGACTTTCCCCAAAACACAAA
ATAATCAACATAAACAATAA
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