mRNA_F-serratus_M_contig85.19899.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig85.19899.1
Unique NamemRNA_F-serratus_M_contig85.19899.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig85.19899.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig85contigF-serratus_M_contig85:711060..716365 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size1340
Cds size1320
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig85.19899.1prot_F-serratus_M_contig85.19899.1Fucus serratus malepolypeptideF-serratus_M_contig85 711078..716365 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932501.0325973-UTR-F-serratus_M_contig85:711059..7110771622932501.0325973-UTR-F-serratus_M_contig85:711059..711077Fucus serratus maleUTRF-serratus_M_contig85 711060..711077 +
1690964339.0373461-UTR-F-serratus_M_contig85:711059..7110771690964339.0373461-UTR-F-serratus_M_contig85:711059..711077Fucus serratus maleUTRF-serratus_M_contig85 711060..711077 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932501.0517957-CDS-F-serratus_M_contig85:711077..7111611622932501.0517957-CDS-F-serratus_M_contig85:711077..711161Fucus serratus maleCDSF-serratus_M_contig85 711078..711161 +
1690964339.0488036-CDS-F-serratus_M_contig85:711077..7111611690964339.0488036-CDS-F-serratus_M_contig85:711077..711161Fucus serratus maleCDSF-serratus_M_contig85 711078..711161 +
1622932501.0814245-CDS-F-serratus_M_contig85:714514..7154621622932501.0814245-CDS-F-serratus_M_contig85:714514..715462Fucus serratus maleCDSF-serratus_M_contig85 714515..715462 +
1690964339.0649066-CDS-F-serratus_M_contig85:714514..7154621690964339.0649066-CDS-F-serratus_M_contig85:714514..715462Fucus serratus maleCDSF-serratus_M_contig85 714515..715462 +
1622932501.0982435-CDS-F-serratus_M_contig85:716077..7163651622932501.0982435-CDS-F-serratus_M_contig85:716077..716365Fucus serratus maleCDSF-serratus_M_contig85 716078..716365 +
1690964339.0809975-CDS-F-serratus_M_contig85:716077..7163651690964339.0809975-CDS-F-serratus_M_contig85:716077..716365Fucus serratus maleCDSF-serratus_M_contig85 716078..716365 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig85.19899.1

>prot_F-serratus_M_contig85.19899.1 ID=prot_F-serratus_M_contig85.19899.1|Name=mRNA_F-serratus_M_contig85.19899.1|organism=Fucus serratus male|type=polypeptide|length=440bp
MTTSRVLASDVAMDMENWLCRSRLSPYLEAISDGTYGGASSTVEEKRITF
QHWVEADEAQKFTINVGDYPAGCDGTSVHVPAATVESAFALGTPIELKSD
KFSSKYELLPSSVHPTPSRHGDVFILPGIGGTYDVKSSRLKGPFCGRVES
HSHSDGVGDNPRWRFGTPFRDSNIRYLKISRANAPNFLCDEVFEHLVYGV
WPFRMKALALDDFKGARRKFRKSLMGFTVVRSHSGDIPTRQFSYGCGGDL
ERAVPSSERSGPSVDGEWTRRTIPISDFHVSKSTDEDSDQDTDDGTVHRV
HEDRFALIHLTRPGSRKQTTNKRRHEYVQRVVPRKEDLRRIAVQTHSRTH
CSQRRFVAEIRRIYHVPTSYLMAMWKDVKSDCFHCERNITSPKSLPFKPI
LSKCFAEHIAFGTKTLPHQRGYLLVAVDHFSGYAMCEHII
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mRNA from alignment at F-serratus_M_contig85:711060..716365+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig85.19899.1 ID=mRNA_F-serratus_M_contig85.19899.1|Name=mRNA_F-serratus_M_contig85.19899.1|organism=Fucus serratus male|type=mRNA|length=5306bp|location=Sequence derived from alignment at F-serratus_M_contig85:711060..716365+ (Fucus serratus male)
AGGGAACTTCCTGCGGAGATGACAACATCGAGGGTGCTAGCTTCTGACGT
AGCTATGGACATGGAGAATTGGCTGTGCCGGAGTCGATTGTCCCCCTATC
TGGTAAGCACTAAAGGGTCAACTATGATCACTGTTCCACAGCTTGAATTT
CTACTACGTTGTTCGTGTTGATAACAGACAATCTGGAAGCCACTTAAATC
ACCAGAGAAGTAGTAGTAATAGCCACACCGAGACTTTCTGTATCGTACAT
CCATGTCTTATAGTCTACACACAGTACCAATAGCGTGTTCGCAGAGAGGG
AGAGAGTGATACGATAAACTGGTCGTGGTTATATTTGAGAAGGCATCACC
CCTTAATTTGCCGGAAACACGTTGACGACTGTTTTAGGGACTGGTTACCC
TCGTGGTAATTTTCACCGCCCAGTCTATTTCTGTGGCTGGAGGCTTTTGT
ATTTAAAGAAAAATCAGAATACGCCTAGACCTTCTGAGCATCCTTATAAG
GACTGATGACCGAGTGGTGCGTAACTGTCAAATGGCTTGTATCCTGTGGT
GTGTTAGTGACCATTATCACCATATGTATGGTCATCACATATAGCAGAGT
ATGGATCAACCGTGTAAGGTTGCCAATGCTGCTCGTGGTCAGCTGAACAG
GGAAAATTAATATTCCCCTGTCCCTCTGAGAATTTAGTCTCGCGGGACGG
GTTCAACCGTCCCGTCCCGCGTCAGCCTGCTCATCTCCATACTCAGGCTG
AATCTGGTGCTTACTTACGGGATTCCTCCCGAGTTCCGCGGCGGCGTTCA
TTTATGAAACCGCCATACGCCATCGGGTCAGTCCCGAGTTTATTGAGTCA
CGCAGTTGCGTACCGATGGCGTTCACTACCGAGAGTCCGCCGGCACAGGG
CCAGTAAACCTCAAGGTAGTTCCGAACGAGTGCTGCCTTGGCAGGTCAAC
ATGGACCAATTAATATGCGCCTCTATTTCCCGCACCCACTATTGATATGA
GGTGGGCATGTTGAAAGTACTAATCACAGGACCAAACCTGTACCGTACTG
GATAATATATAATTCCCCTCGATGTAAAGCCAAACGGCTATACGGCTGTG
CCATGTTTTTTCGTGCCTTAACATGCATGCATTACCTCCTCCATAATATC
GACTGATGTCCTCACCTAAACGTTTTGACATTTTCCCCCTTGCCTGGCCG
GACGCTCATTAAATGCCTTCAGATTTTCTTCAAAATATTTCGAGTGCGCG
CAGTTTTGTACCAATAGCACTATTAATAGCATCATTAGGTCTAGTAATAA
TACCGATGCTTCCTTTCAACATGCCCACTTCATACCAATATAGTGGGTTT
AGTATAATAGAGGCGCTTATTATTTGGTCTGTGGTGATGCAAAGGCAGTA
CACGTTACTGGAACTATGCCTTGAGGTCTACCGGTCCTGTGCCGACGGAC
TCTCGGCAGCAAACGCAATCGATACGCACCAGATTCAGCCTGATTATGGA
GAATGAACAGGCCTACGCGGGACGGGACGGTCGAACCCGTCTCGCGAGGC
GAGGCGCGAATGGAGACAGGGAAAAAAATATTTCGGGTTGCGAAATATGT
ATACGCTCGCTCCTGCGTTGAGCAGCTAGTCATTATGAAACCGCTCGCTC
AGCTGAAAGCGTCCGAAGATAGGATCTCGTGCAGGTTGCGACACGACCTT
GTCCGTTTCTATCTACCCCGGTTCTTCGGTCGCCGATAATAGCCGCGACG
AATGGTTAATTCGAGCAACTGCCGGCAGCCGCGGTGATTGGCTGGCTCGA
GGAACAGCCGGCTGATCCCCCCCCCCCCAGCACCACCAGCACCACCAGCA
CCACCCACGTAGAACCGGTTGATATTTTTGCATGCGTTTCTCTAGCGATA
TCAGTATGTTCTTCGACGTCTGTAAATGGACACTATTTAATACTCCAGTA
GGTGTTCCTCCACCCGCTTCCTGTCCGATCTGTACGATCTGTCCGATGAC
GATGACGATGACGACATCCATGCCGTGAGGGGCTGAGCCATCGGGTCGTG
GAGGTGCACGTCTAAAAGAAGCTACAGAAAGCTGACCGAGTTGTTGTTTA
AAGCAAAAACTGAACGCATCCAGACCTCTGAGCATCCCCCAGTCAGGGGG
GGAAATGTCAAAAGTTTTAGAGATCATCGGCTGCAAATAAAAACATTTTC
ATGGCGTTTAAACGCGTTCCCCGATGGTAGTAACATTGGGTCAACAGTAT
GATGTCGGGGAGAAGCCCACCGTTATTCTGTACACTTACATTAATCGCCA
TGCAGGGACACCAGACATAAAGCAAAAACTAAACAGAAACGATGTATTTT
CATATAATGGTGAATAAAGACAAAGTTCAGAATAAGGCTAATAAGGCTAA
GGCTATATAGACAACGACAGTAGCTCATGTAATAGCCTAATAGCCTATTT
TGTGCATTACCGTACTGGTACTAGCACTTGTGGCAATCCCAGCCCCGTTC
AGTTTTATTGTCCAACGTATAACAATGACCATGACGGATGTACGGTACTA
TTATACTGTAGTAATGTATTCGCCTTAACCTTTTGATATGTTTGTCTAAA
ATAAAGTCCTTGTAAAGTCCTTGTAAGCTCTGTAACTGCGTCGTGTGAAA
GGAAACTGACCTAACCAAGTGTAAAAGCTGACCTGAGGAAATTAGCGTGA
CGCCGTTCAGGGCAACAAAAGACAGCCATCACCAATAAAACCACTATTTA
TAGGGCTCGAGGCGTTTTATTACCACTTGACACCCCAGCAGTATTGTCCA
GCAATCATATACCAGGTATGAAATACAGTATAATCCTGTAGTCCACACAG
ATGCTGGATGTGCTCGTGAGTTTCGAATGTCTGGAGATTATTTGAGTGAA
ACACCCTACAGGAGCAGCAAGTGTTGCTTCCTGGCTTCATCTGGAGCACA
AGAGAGTGCCCAGTACTGGCTAATGCTCCGAGCGCGGCCTTCGTTCATTT
TTTAACCATAATCGCATGCCCCACTGGTAAATTACTACGTATGAAATGAA
ACGTTTAACGTTGTTGTTGTTGTTGTTGTACCAAGTGGCTATCTTTGCGT
CAAAGCTGAGCTAGCTCTATTAACAGCTAGTCTAGTCTAGTCTATGTGAT
GCGATTTCGTCTACATTTTTTGTCTGGCTTGCGTACATACCTGGTATACC
TTTCCCCGAAGAAATGTCTCACATGCATCACACAGGCGTATTGAGCAGTA
CAGCACAACGGTCATTCAAAAAAAGCAACATGGGTAACTCACGCCCTTCC
TTGATTGAAGCCTTGCGTCGTGGCGGTGTAGACGACTCCAGATCAGGCGT
GTACATGCGAGCTAGGGCTAACCATTCCGCATTGTAGTTAACAAGTGCCC
GTGACAAGTGCCTGTTGTTGTGACCGCGTACCTCTTCTATTCTCGTGTTA
CGCAGGAAGCCATATCCGATGGCACGTATGGTGGTGCATCATCGACGGTG
GAGGAAAAGCGCATAACCTTCCAGCACTGGGTGGAAGCGGACGAAGCACA
GAAATTTACAATTAACGTTGGTGATTACCCAGCAGGATGCGACGGCACAA
GCGTGCACGTGCCCGCCGCTACCGTAGAGTCTGCGTTTGCGCTGGGTACA
CCAATAGAGTTGAAATCCGACAAATTTAGTTCGAAGTACGAACTACTACC
ATCGTCCGTTCATCCCACACCGTCCCGACATGGGGACGTCTTTATTCTAC
CTGGGATTGGGGGGACCTACGATGTAAAGAGCTCACGCCTAAAGGGACCT
TTTTGCGGTCGTGTTGAGTCGCATTCGCACTCAGATGGTGTTGGCGATAA
CCCGAGATGGCGGTTTGGCACCCCGTTCCGTGATTCAAACATCCGATATC
TCAAAATCAGTCGAGCCAACGCACCGAATTTCCTCTGCGACGAGGTGTTC
GAACACTTGGTATACGGAGTTTGGCCTTTTCGAATGAAGGCGCTGGCTCT
CGACGATTTTAAGGGAGCAAGACGTAAGTTTCGCAAGAGCCTCATGGGAT
TCACTGTAGTTCGCTCCCACTCAGGGGATATTCCAACCCGACAGTTCTCT
TACGGGTGTGGGGGCGATCTCGAGAGAGCGGTCCCCTCGTCAGAGAGGTC
CGGGCCATCCGTGGACGGCGAGTGGACAAGAAGAACGATTCCTATTTCGG
ACTTTCACGTATCCAAAAGCACCGACGAAGACTCTGACCAAGACACCGAC
GACGGCACGGTGCACCGTGTACACGAGGACCGCTTCGCCCTTATCCATCT
AACGCGGCCTGGTAGCAGGAAACAGACGACGAACAAACGCCGCCACGAGT
ACGTGCAGAGAGTCGTCCCCCGCAAAGAAGATCTGCGACGCATCGCCGTC
CAGGTAACGAAAAATATTCGGGCGGACGCATCAACGCAAGGTCGAGGCGG
CGTTGGGCTATACGTCCCCTGACATGAGTAGTTTCGGCGTCTTGATAGGA
TATGAGGAATTTTATGACTTGGGGGGTTGCTGTTGTCGTCCGTGTGTGCG
TGTTTGTATTTATTGAATTGCACATAACCACGCAGTCCGACCCTTCCATC
CTATTAATAACACTCGCATTGGTCCTATTCACTATTCCTATTCCTATTCC
TATTCATATTCATATTCCTATTATAGTGTGTGTGTGTGTGTGTGTGTGGA
TGTGGATGTGTTCGGTAATACGTCTACCAGATAGGACACAAATTGAGCAA
GTTTGCCAAAGATTATCGTAGAGCCCTGAACAAGGACGATTATGTTTCTT
CGGTTGTTTCTCTCCTATCCTATGGGGATATCTATATCATCGCTAGCGGT
TGGCCATGTAAAAAGGCACAGGGAACAAACCATTACCTACACTTTTATTT
TGTACGGCAGAAATATCAAATAACACAAGCTAGGTGTCTAATCCTCCTCT
CATTAGGATTACTTTTGTCTTGCCGATAACGCCTCGTTACAATTGTGGAC
CTCGCCCAATGCCCACAGACGCACTCCAGGACACACTGCAGTCAAAGGCG
TTTCGTAGCAGAAATCCGGCGAATATACCACGTGCCAACCAGCTACCTGA
TGGCAATGTGGAAGGACGTCAAAAGCGACTGCTTCCACTGCGAGAGAAAC
ATAACCTCTCCAAAGAGTCTTCCGTTCAAGCCCATCCTTAGCAAGTGCTT
CGCCGAGCACATTGCATTCGGCACAAAAACGTTGCCCCACCAACGCGGAT
ACTTGCTGGTTGCCGTAGACCATTTCTCGGGGTACGCCATGTGCGAACAT
ATTATC
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Coding sequence (CDS) from alignment at F-serratus_M_contig85:711060..716365+

>mRNA_F-serratus_M_contig85.19899.1 ID=mRNA_F-serratus_M_contig85.19899.1|Name=mRNA_F-serratus_M_contig85.19899.1|organism=Fucus serratus male|type=CDS|length=2640bp|location=Sequence derived from alignment at F-serratus_M_contig85:711060..716365+ (Fucus serratus male)
ATGACAACATCGAGGGTGCTAGCTTCTGACGTAGCTATGGACATGGAGAA
TTGGCTGTGCCGGAGTCGATTGTCCCCCTATCTGATGACAACATCGAGGG
TGCTAGCTTCTGACGTAGCTATGGACATGGAGAATTGGCTGTGCCGGAGT
CGATTGTCCCCCTATCTGGAAGCCATATCCGATGGCACGTATGGTGGTGC
ATCATCGACGGTGGAGGAAAAGCGCATAACCTTCCAGCACTGGGTGGAAG
CGGACGAAGCACAGAAATTTACAATTAACGTTGGTGATTACCCAGCAGGA
TGCGACGGCACAAGCGTGCACGTGCCCGCCGCTACCGTAGAGTCTGCGTT
TGCGCTGGGTACACCAATAGAGTTGAAATCCGACAAATTTAGTTCGAAGT
ACGAACTACTACCATCGTCCGTTCATCCCACACCGTCCCGACATGGGGAC
GTCTTTATTCTACCTGGGATTGGGGGGACCTACGATGTAAAGAGCTCACG
CCTAAAGGGACCTTTTTGCGGTCGTGTTGAGTCGCATTCGCACTCAGATG
GTGTTGGCGATAACCCGAGATGGCGGTTTGGCACCCCGTTCCGTGATTCA
AACATCCGATATCTCAAAATCAGTCGAGCCAACGCACCGAATTTCCTCTG
CGACGAGGTGTTCGAACACTTGGTATACGGAGTTTGGCCTTTTCGAATGA
AGGCGCTGGCTCTCGACGATTTTAAGGGAGCAAGACGTAAGTTTCGCAAG
AGCCTCATGGGATTCACTGTAGTTCGCTCCCACTCAGGGGATATTCCAAC
CCGACAGTTCTCTTACGGGTGTGGGGGCGATCTCGAGAGAGCGGTCCCCT
CGTCAGAGAGGTCCGGGCCATCCGTGGACGGCGAGTGGACAAGAAGAACG
ATTCCTATTTCGGACTTTCACGTATCCAAAAGCACCGACGAAGACTCTGA
CCAAGACACCGACGACGGCACGGTGCACCGTGTACACGAGGACCGCTTCG
CCCTTATCCATCTAACGCGGCCTGGTAGCAGGAAACAGACGACGAACAAA
CGCCGCCACGAGTACGTGCAGAGAGTCGTCCCCCGCAAAGAAGATCTGCG
ACGCATCGCCGTCCAGGAAGCCATATCCGATGGCACGTATGGTGGTGCAT
CATCGACGGTGGAGGAAAAGCGCATAACCTTCCAGCACTGGGTGGAAGCG
GACGAAGCACAGAAATTTACAATTAACGTTGGTGATTACCCAGCAGGATG
CGACGGCACAAGCGTGCACGTGCCCGCCGCTACCGTAGAGTCTGCGTTTG
CGCTGGGTACACCAATAGAGTTGAAATCCGACAAATTTAGTTCGAAGTAC
GAACTACTACCATCGTCCGTTCATCCCACACCGTCCCGACATGGGGACGT
CTTTATTCTACCTGGGATTGGGGGGACCTACGATGTAAAGAGCTCACGCC
TAAAGGGACCTTTTTGCGGTCGTGTTGAGTCGCATTCGCACTCAGATGGT
GTTGGCGATAACCCGAGATGGCGGTTTGGCACCCCGTTCCGTGATTCAAA
CATCCGATATCTCAAAATCAGTCGAGCCAACGCACCGAATTTCCTCTGCG
ACGAGGTGTTCGAACACTTGGTATACGGAGTTTGGCCTTTTCGAATGAAG
GCGCTGGCTCTCGACGATTTTAAGGGAGCAAGACGTAAGTTTCGCAAGAG
CCTCATGGGATTCACTGTAGTTCGCTCCCACTCAGGGGATATTCCAACCC
GACAGTTCTCTTACGGGTGTGGGGGCGATCTCGAGAGAGCGGTCCCCTCG
TCAGAGAGGTCCGGGCCATCCGTGGACGGCGAGTGGACAAGAAGAACGAT
TCCTATTTCGGACTTTCACGTATCCAAAAGCACCGACGAAGACTCTGACC
AAGACACCGACGACGGCACGGTGCACCGTGTACACGAGGACCGCTTCGCC
CTTATCCATCTAACGCGGCCTGGTAGCAGGAAACAGACGACGAACAAACG
CCGCCACGAGTACGTGCAGAGAGTCGTCCCCCGCAAAGAAGATCTGCGAC
GCATCGCCGTCCAGACGCACTCCAGGACACACTGCAGTCAAAGGCGTTTC
GTAGCAGAAATCCGGCGAATATACCACGTGCCAACCAGCTACCTGATGGC
AATGTGGAAGGACGTCAAAAGCGACTGCTTCCACTGCGAGAGAAACATAA
CCTCTCCAAAGAGTCTTCCGTTCAAGCCCATCCTTAGCAAGTGCTTCGCC
GAGCACATTGCATTCGGCACAAAAACGTTGCCCCACCAACGCGGATACTT
GCTGGTTGCCGTAGACCATTTCTCGGGGTACGCCATGTGCGAACATATTA
TCACGCACTCCAGGACACACTGCAGTCAAAGGCGTTTCGTAGCAGAAATC
CGGCGAATATACCACGTGCCAACCAGCTACCTGATGGCAATGTGGAAGGA
CGTCAAAAGCGACTGCTTCCACTGCGAGAGAAACATAACCTCTCCAAAGA
GTCTTCCGTTCAAGCCCATCCTTAGCAAGTGCTTCGCCGAGCACATTGCA
TTCGGCACAAAAACGTTGCCCCACCAACGCGGATACTTGCTGGTTGCCGT
AGACCATTTCTCGGGGTACGCCATGTGCGAACATATTATC
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