mRNA_F-serratus_M_contig8491.19887.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig8491.19887.1
Unique NamemRNA_F-serratus_M_contig8491.19887.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig8491.19887.1 vs. uniprot
Match: D7G616_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G616_ECTSI)

HSP 1 Score: 96.7 bits (239), Expect = 4.980e-21
Identity = 42/65 (64.62%), Postives = 50/65 (76.92%), Query Frame = 3 
Query:   42 GAFLAIYNYKREAAEVPEDDTPPPLGMVHFCVRHDPDAKQQVFKFLDTGCVVNFCDGACDRQYCR 236
            GA L    Y   ++ VP+DDTPPP G VH CVRHDPDA+QQV +F++TGCVVNFC GAC+R YCR
Sbjct:  940 GAILGA-GYTEFSSLVPDDDTPPPWGWVHMCVRHDPDAEQQVLEFVETGCVVNFCRGACERPYCR 1003
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BLAST of mRNA_F-serratus_M_contig8491.19887.1 vs. uniprot
Match: A0A835Z5S3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5S3_9STRA)

HSP 1 Score: 95.5 bits (236), Expect = 1.280e-20
Identity = 44/79 (55.70%), Postives = 54/79 (68.35%), Query Frame = 3 
Query:    9 GQWSCCSGEGGGAFLAIYNYKREAAEVPEDDTPPPLGMVHFCVRHDPDAKQQVFKFLDTGCVVNFCDGACDRQYCRPLS 245
            G+   CSG+   A LA+Y+Y+REAA VP  D PPP   VH CVRHD DA+ Q+  F+ TGCVVNFC GAC R  CR ++
Sbjct: 1255 GESQVCSGD---AVLALYDYRREAATVPLTDLPPPFNWVHLCVRHDRDAQLQLLHFVATGCVVNFCGGACVRAACRDIT 1330
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig8491.19887.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G616_ECTSI4.980e-2164.62Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835Z5S3_9STRA1.280e-2055.70Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig8491contigF-serratus_M_contig8491:2295..4384 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons2
Model size338
Cds size336
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932500.6788137-CDS-F-serratus_M_contig8491:2294..25441622932500.6788137-CDS-F-serratus_M_contig8491:2294..2544Fucus serratus maleCDSF-serratus_M_contig8491 2295..2544 -
1690964338.8720057-CDS-F-serratus_M_contig8491:2294..25441690964338.8720057-CDS-F-serratus_M_contig8491:2294..2544Fucus serratus maleCDSF-serratus_M_contig8491 2295..2544 -
1622932500.6986403-CDS-F-serratus_M_contig8491:4298..43841622932500.6986403-CDS-F-serratus_M_contig8491:4298..4384Fucus serratus maleCDSF-serratus_M_contig8491 4299..4384 -
1690964338.8927207-CDS-F-serratus_M_contig8491:4298..43841690964338.8927207-CDS-F-serratus_M_contig8491:4298..4384Fucus serratus maleCDSF-serratus_M_contig8491 4299..4384 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig8491.19887.1prot_F-serratus_M_contig8491.19887.1Fucus serratus malepolypeptideF-serratus_M_contig8491 2295..4384 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig8491.19887.1

>prot_F-serratus_M_contig8491.19887.1 ID=prot_F-serratus_M_contig8491.19887.1|Name=mRNA_F-serratus_M_contig8491.19887.1|organism=Fucus serratus male|type=polypeptide|length=112bp
MRGVSGRAVRERVAARSLRSTTTRERRPRFPKTIRLLHWAWYTFAFGMTR
TRSSKCSSSWTLAAWSTSATAPAIGSTVAHFHSSMQKSKTHFTFLGLCAL
LSFQVLVIAKNA
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mRNA from alignment at F-serratus_M_contig8491:2295..4384-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig8491.19887.1 ID=mRNA_F-serratus_M_contig8491.19887.1|Name=mRNA_F-serratus_M_contig8491.19887.1|organism=Fucus serratus male|type=mRNA|length=2090bp|location=Sequence derived from alignment at F-serratus_M_contig8491:2295..4384- (Fucus serratus male)
ATGAGGGGGGTCAGTGGTCGTGCTGTTCGGGAGAGGGTGGCGGCGCGTTC
CTTGCGATCTACAACTACAAGAGAGAGGCGGCCGAGGTGCGGGGTGGGAG
CCGGGGAGTAGAGTGTTTTTATATGGAGGCGTTTATATTTCGCATGTACG
GTACACTACTGTCCAGTACGCCGCACCGTGGGAAAACATTATCTCCTGCT
TCCTTTCTTGTGCTACCAATTCAGCCGCCGTTGTATGAGCAGTGGCATGC
GCATCGTGCATCGCTTGGGTCATACACGTGCGGAACACGTTTTGTGCAGA
TCGCGTATCGCTTGACGCATACTCCTTGTAGTAGTGTACACGATACAAGG
ACACTTTTACAAGGACAAGCAATCATAAGTAAGCCTTTTTTTCTATGACA
CACCACAAACAGCAGGAAATACGGGTTTCCTAGAACTTGAAAGAAACGTT
CTTATGGCGGGCTTCATCTAAGTTTGCCACAACGAAACAATAGCGATAAC
TGTCTCCGCAGCCATGCCCCTTCGCAAACGGGTGGGCGGTGCTGGAGCTG
ACGCCGTGCTCGCCGAAATACACCGATCGCTAGTGTGGCAAGTGCAGTGA
ATACCTCCACGGTACCTGTCGCGTGCCAGACCCCAGATTTGACGAGAAAT
TGAAGCTCTTGGTGAGGGTCGGTGTTGACTCGATGAAACGCAGAAGCCTC
GAGGGAGCAGGGCAAGCAGAGTATTTTGACGCTGTCCTCTAGCACGAAGC
CATAGGCTCTTGGCCGTCACCCCTCCAGCATTAGTTCAGCGCATTGTCCT
ACTGGCTCACCGCCCAGCCTCGACTGCACGTCGAGCGCGCAGAAGTCGTG
AATCTTGGTACTACAACAGTACAGTATACAGCAGCACTACTATAGTATAA
AGTTTCTTGAAGTCAAGTTTCAGGCTCTTCGCCACGGTTCGAGTACAGTG
TACACTGTAGTAATGTTCCAGGGGTGCAACCGAGGGTTCACCAACTTCGT
GCGCAAGGCCTGTTTGCTCCATGAAATTTCGTCCGTACTAGAACCACTAT
AAACTCCAAACAAGGAACATTATTGTTTTCTGCTTATGAGATAGTGCCAC
AAAGCCACACACTGTTTTTGGTACTCTATTTTCTATTATATCCGCTCTAA
GGACGTTTTGCCTTACGGAGGGCTCTCTTCACAAGGACAACCGGCCTAAC
AGCGGGACTAAACTACCCTGGCAAGGACGGGCAGTGATAAGGAGGCTTTT
TTGGGCTGTTTCAGCGTTCGGTCTTATATCGGGTCCATTATTGAATGGCA
TTGTGCGCCAGGTTTGCCTATCTAGAAGATCCAATATAGGTGTATTGATT
CTTCCACCTGCGCAGCACCCCGCGAGGTCCACCTTCGATGGGTGAAGTTC
AAGCCTCTATGTAGAGCTCTGTCTGACCGTATCATGCCCAATCGGTAGAA
GAGCCATGAAGCAGTACTTCTACATATAGCTCTTTTTCAAAGGCTGCACC
AAAAAAAAATGCGTCTTTAATCGTCAGTCCTCGCTGGTGAGGTTTCGTTT
TCCATCCACTCCTACTCCAGTACAGTCGTTTTGGTATCTAAGTTATAGAG
ATAAGACGGGGGCGACACGACAGCGTTTTTTACATGCACACACAAATACT
AGCTCTACGCGGTATTACGCTACGCAGGCGCTCAAGGTCAAGTGGGCAGC
TTTTTACTATTCCTTTATTTTTTTTGTGTGCCCTCCCCGCCGCTTTACGT
TTGTTTGTTTTTTCATTAAAAATAATTCCTTTTCCTTATACGATATAGTT
TATCATCTATAAAATGTATTTATTTTGCGCGCGGGGGCAGGTTCCCGAAG
ACGATACGCCTCCTCCATTGGGCATGGTACACTTTTGCGTTCGGCATGAC
CCGGACGCGAAGCAGCAAGTGTTCAAGTTCTTGGACACTGGCTGCGTGGT
CAACTTCTGCGACGGCGCCTGCGATCGGCAGTACTGTCGCCCACTTTCAT
AGCAGCATGCAAAAAAGCAAAACCCACTTTACATTTTTAGGGTTGTGTGC
TTTGCTGAGCTTCCAGGTCCTGGTGATTGCGAAAAATGCT
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Coding sequence (CDS) from alignment at F-serratus_M_contig8491:2295..4384-

>mRNA_F-serratus_M_contig8491.19887.1 ID=mRNA_F-serratus_M_contig8491.19887.1|Name=mRNA_F-serratus_M_contig8491.19887.1|organism=Fucus serratus male|type=CDS|length=672bp|location=Sequence derived from alignment at F-serratus_M_contig8491:2295..4384- (Fucus serratus male)
ATGAGGGGGGTCAGTGGTCGTGCTGTTCGGGAGAGGGTGGCGGCGCGTTC
CTTGCGATCTACAACTACAAGAGAGAGGCGGCCGAGATGAGGGGGGTCAG
TGGTCGTGCTGTTCGGGAGAGGGTGGCGGCGCGTTCCTTGCGATCTACAA
CTACAAGAGAGAGGCGGCCGAGGTTCCCGAAGACGATACGCCTCCTCCAT
TGGGCATGGTACACTTTTGCGTTCGGCATGACCCGGACGCGAAGCAGCAA
GTGTTCAAGTTCTTGGACACTGGCTGCGTGGTCAACTTCTGCGACGGCGC
CTGCGATCGGCAGTACTGTCGCCCACTTTCATAGCAGCATGCAAAAAAGC
AAAACCCACTTTACATTTTTAGGGTTGTGTGCTTTGCTGAGCTTCCAGGT
CCTGGTGATTGCGAAAAATGCTGTTCCCGAAGACGATACGCCTCCTCCAT
TGGGCATGGTACACTTTTGCGTTCGGCATGACCCGGACGCGAAGCAGCAA
GTGTTCAAGTTCTTGGACACTGGCTGCGTGGTCAACTTCTGCGACGGCGC
CTGCGATCGGCAGTACTGTCGCCCACTTTCATAGCAGCATGCAAAAAAGC
AAAACCCACTTTACATTTTTAGGGTTGTGTGCTTTGCTGAGCTTCCAGGT
CCTGGTGATTGCGAAAAATGCT
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