mRNA_F-serratus_M_contig849.19884.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig849.19884.1
Unique NamemRNA_F-serratus_M_contig849.19884.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig849.19884.1 vs. uniprot
Match: D8LEF4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEF4_ECTSI)

HSP 1 Score: 92.0 bits (227), Expect = 7.730e-18
Identity = 86/218 (39.45%), Postives = 115/218 (52.75%), Query Frame = -3 
Query:    3 AQKELHDTEGRLDTAIGVQDELRERCEELALASGAFAAEVAKQKQERSKSQERSRRTVEASAVEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSEAQGVEDDVAQVLDALASSEKERRRLEQELDLQCRRTVAAEGTVEDVRKNVDRERAALCEKAGKLEDVVQASASGLAESLEMETKQRKHLEQERRRLASRVTDLEAALISASSEARKAVKLAA 656
            A+  L DT+ RL+ A+  Q ELR RC EL+LASGAFA+EVAKQK+ER++SQER+R                                       +EA+ ++ DVAQVLDALASSEKERRRLE EL    R+T AA        +    ER AL  ++G+ E                ET++R+ +E+E + L +R  DLEAAL +   E +KA +  A
Sbjct: 1677 AEASLSDTQARLEAALATQRELRSRCAELSLASGAFASEVAKQKEERARSQERARLATAELRDLSAKFSRASKTAAADAAAERDRLERELVATRAEARDIDTDVAQVLDALASSEKERRRLEAELH---RQTKAARV------QRQQGEREALEVESGRKE---------------RETERREKVERECKVLEARTGDLEAALAA---ELKKAAETGA 1867
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig849.19884.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LEF4_ECTSI7.730e-1839.45Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig849contigF-serratus_M_contig849:328167..328827 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size661
Cds size351
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig849.19884.1prot_F-serratus_M_contig849.19884.1Fucus serratus malepolypeptideF-serratus_M_contig849 328216..328566 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932499.3302476-UTR-F-serratus_M_contig849:328166..3282151622932499.3302476-UTR-F-serratus_M_contig849:328166..328215Fucus serratus maleUTRF-serratus_M_contig849 328167..328215 +
1690964338.1603105-UTR-F-serratus_M_contig849:328166..3282151690964338.1603105-UTR-F-serratus_M_contig849:328166..328215Fucus serratus maleUTRF-serratus_M_contig849 328167..328215 +
1622932499.3678167-UTR-F-serratus_M_contig849:328566..3288271622932499.3678167-UTR-F-serratus_M_contig849:328566..328827Fucus serratus maleUTRF-serratus_M_contig849 328567..328827 +
1690964338.1925642-UTR-F-serratus_M_contig849:328566..3288271690964338.1925642-UTR-F-serratus_M_contig849:328566..328827Fucus serratus maleUTRF-serratus_M_contig849 328567..328827 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932499.3523984-CDS-F-serratus_M_contig849:328215..3285661622932499.3523984-CDS-F-serratus_M_contig849:328215..328566Fucus serratus maleCDSF-serratus_M_contig849 328216..328566 +
1690964338.181648-CDS-F-serratus_M_contig849:328215..3285661690964338.181648-CDS-F-serratus_M_contig849:328215..328566Fucus serratus maleCDSF-serratus_M_contig849 328216..328566 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig849.19884.1

>prot_F-serratus_M_contig849.19884.1 ID=prot_F-serratus_M_contig849.19884.1|Name=mRNA_F-serratus_M_contig849.19884.1|organism=Fucus serratus male|type=polypeptide|length=117bp
MPPPDLSPLTPTVFSPVQDASAVLSPSPMTPPARMRWPEQRPPTSLPFRK
APPSRDRRSYARPPPFLPPPPFSCIADLALAPVAGAPSPRKPGHRAPEQR
RLRLPELPIVPFRDPS*
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mRNA from alignment at F-serratus_M_contig849:328167..328827+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig849.19884.1 ID=mRNA_F-serratus_M_contig849.19884.1|Name=mRNA_F-serratus_M_contig849.19884.1|organism=Fucus serratus male|type=mRNA|length=661bp|location=Sequence derived from alignment at F-serratus_M_contig849:328167..328827+ (Fucus serratus male)
TCCGCGGCGAGCTTGACAGCCTTCCTGGCTTCCGAGGAGGCGGATATCAA
TGCCGCCTCCAGATCTGTCACCCTTGACGCCAACCGTCTTCTCTCCTGTT
CAAGATGCTTCCGCTGTTTTGTCTCCATCTCCAATGACTCCGCCAGCCCG
GATGCGCTGGCCTGAACAACGTCCTCCAACTTCCCTGCCTTTTCGCAAAG
CGCCGCCCTCTCGCGATCGACGTTCTTACGCACGTCCTCCACCGTTCCTT
CCGCCGCCACCGTTCTCCTGCATTGCAGATCTAGCTCTTGCTCCAGTCGC
CGGCGCTCCTTCTCCGAGGAAGCCAGGGCATCGAGCACCTGAGCAACGTC
GTCTTCGACTCCCTGAGCTTCCGATTGTGCCTTTTCGAGATCCTTCTTAA
GACGAGTGCACTCCGCAGTCGAAGCCTCTGAAGCGCGAGAGAACTCGGCG
CACCGTTCCCTCAGCTCCACCGCGCTCGCCTCCACGGTTCGTCGAGACCG
CTCTTGCGACTTGGACCGTTCTTGTTTCTGCTTGGCGACCTCGGCCGCGA
AGGCGCCTGATGCGAGGGCGAGCTCCTCGCACCGCTCCCGCAGCTCGTCT
TGGACGCCTATCGCGGTGTCAAGCCGGCCTTCTGTGTCATGGAGCTCTTT
CTGGGCGGCTT
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Coding sequence (CDS) from alignment at F-serratus_M_contig849:328167..328827+

>mRNA_F-serratus_M_contig849.19884.1 ID=mRNA_F-serratus_M_contig849.19884.1|Name=mRNA_F-serratus_M_contig849.19884.1|organism=Fucus serratus male|type=CDS|length=702bp|location=Sequence derived from alignment at F-serratus_M_contig849:328167..328827+ (Fucus serratus male)
ATGCCGCCTCCAGATCTGTCACCCTTGACGCCAACCGTCTTCTCTCCTGT
TCAAGATGCTTCCGCTGTTTTGTCTCCATCTCCAATGACTCCGCCAGCCC
GGATGCGCTGGCCTGAACAACGTCCTCCAACTTCCCTGCCTTTTCGCAAA
GCGCCGCCCTCTCGCGATCGACGTTCTTACGCACGTCCTCCACCGTTCCT
TCCGCCGCCACCGTTCTCCTGCATTGCAGATCTAGCTCTTGCTCCAGTCG
CCGGCGCTCCTTCTCCGAGGAAGCCAGGGCATCGAGCACCTGAGCAACGT
CGTCTTCGACTCCCTGAGCTTCCGATTGTGCCTTTTCGAGATCCTTCTTA
AATGCCGCCTCCAGATCTGTCACCCTTGACGCCAACCGTCTTCTCTCCTG
TTCAAGATGCTTCCGCTGTTTTGTCTCCATCTCCAATGACTCCGCCAGCC
CGGATGCGCTGGCCTGAACAACGTCCTCCAACTTCCCTGCCTTTTCGCAA
AGCGCCGCCCTCTCGCGATCGACGTTCTTACGCACGTCCTCCACCGTTCC
TTCCGCCGCCACCGTTCTCCTGCATTGCAGATCTAGCTCTTGCTCCAGTC
GCCGGCGCTCCTTCTCCGAGGAAGCCAGGGCATCGAGCACCTGAGCAACG
TCGTCTTCGACTCCCTGAGCTTCCGATTGTGCCTTTTCGAGATCCTTCTT
AA
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