mRNA_F-serratus_M_contig848.19873.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig848.19873.1
Unique NamemRNA_F-serratus_M_contig848.19873.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig848.19873.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig848contigF-serratus_M_contig848:299706..300417 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size372
Cds size372
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932496.2125092-CDS-F-serratus_M_contig848:299705..2998971622932496.2125092-CDS-F-serratus_M_contig848:299705..299897Fucus serratus maleCDSF-serratus_M_contig848 299706..299897 +
1690964336.647261-CDS-F-serratus_M_contig848:299705..2998971690964336.647261-CDS-F-serratus_M_contig848:299705..299897Fucus serratus maleCDSF-serratus_M_contig848 299706..299897 +
1622932496.2356262-CDS-F-serratus_M_contig848:300237..3004171622932496.2356262-CDS-F-serratus_M_contig848:300237..300417Fucus serratus maleCDSF-serratus_M_contig848 300238..300417 +
1690964336.6601994-CDS-F-serratus_M_contig848:300237..3004171690964336.6601994-CDS-F-serratus_M_contig848:300237..300417Fucus serratus maleCDSF-serratus_M_contig848 300238..300417 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig848.19873.1prot_F-serratus_M_contig848.19873.1Fucus serratus malepolypeptideF-serratus_M_contig848 299706..300417 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig848.19873.1

>prot_F-serratus_M_contig848.19873.1 ID=prot_F-serratus_M_contig848.19873.1|Name=mRNA_F-serratus_M_contig848.19873.1|organism=Fucus serratus male|type=polypeptide|length=124bp
QASSSEWGGGGRQGSGDRVSPAAGEDLQDNPLLLEFFPLNSKMHDALFFR
FGGMDEDVMPFNERTLEILPRVRLQPILGQMGGNAGDSTRVRRRSPCGGI
DVEDDEDSRLNGAESSLRSPSEDP
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mRNA from alignment at F-serratus_M_contig848:299706..300417+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig848.19873.1 ID=mRNA_F-serratus_M_contig848.19873.1|Name=mRNA_F-serratus_M_contig848.19873.1|organism=Fucus serratus male|type=mRNA|length=712bp|location=Sequence derived from alignment at F-serratus_M_contig848:299706..300417+ (Fucus serratus male)
CAGGCTTCAAGCTCGGAGTGGGGTGGTGGTGGTCGTCAGGGATCGGGGGA
TCGTGTTTCCCCGGCGGCGGGAGAGGACTTACAAGATAATCCCCTTCTGT
TAGAGTTTTTTCCTTTGAACAGCAAGATGCACGACGCCCTTTTTTTCCGG
TTCGGAGGAATGGACGAGGATGTGATGCCCTTCAACGAACGAGTGAGAGT
CTCATGGGCGTTATCGGATTATGCAGGGGGGTGAATACTCGTGTCCCGGG
GGTTGTAGCCGTGAAGCCGGAAATTTAACTAGAATCAGGCTCCATTTATG
TCGGCCGCCTTGTTTTTGACGACGAGCGTTGCAGGACAAGGCGCGAATGT
TCGCTCCCCACGTTTAAGCATCTCGAGGCTGCCACAAGATAGATCAATCT
TCACCTCAAGTAAATTCCGATCATTTGTTGAACGTCTCATCCGTGATTTT
GTTCCTCAACGCTCAAAGCGTGACTGTGGTAAACGCGTTCCTTACCCCCC
CCCCCCTTCACGCGTTTCGCTTTCCTGTCAAGACCCTTGAAATACTTCCC
CGGGTGCGCCTGCAGCCTATTCTAGGCCAGATGGGCGGCAATGCGGGAGA
CTCGACTCGCGTTCGACGAAGGAGCCCCTGCGGCGGGATCGACGTCGAAG
ATGACGAGGATAGCCGATTGAACGGCGCCGAAAGCTCCTTGCGTTCGCCG
AGCGAAGACCCG
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Coding sequence (CDS) from alignment at F-serratus_M_contig848:299706..300417+

>mRNA_F-serratus_M_contig848.19873.1 ID=mRNA_F-serratus_M_contig848.19873.1|Name=mRNA_F-serratus_M_contig848.19873.1|organism=Fucus serratus male|type=CDS|length=744bp|location=Sequence derived from alignment at F-serratus_M_contig848:299706..300417+ (Fucus serratus male)
CAGGCTTCAAGCTCGGAGTGGGGTGGTGGTGGTCGTCAGGGATCGGGGGA
TCGTGTTTCCCCGGCGGCGGGAGAGGACTTACAAGATAATCCCCTTCTGT
TAGAGTTTTTTCCTTTGAACAGCAAGATGCACGACGCCCTTTTTTTCCGG
TTCGGAGGAATGGACGAGGATGTGATGCCCTTCAACGAACGACAGGCTTC
AAGCTCGGAGTGGGGTGGTGGTGGTCGTCAGGGATCGGGGGATCGTGTTT
CCCCGGCGGCGGGAGAGGACTTACAAGATAATCCCCTTCTGTTAGAGTTT
TTTCCTTTGAACAGCAAGATGCACGACGCCCTTTTTTTCCGGTTCGGAGG
AATGGACGAGGATGTGATGCCCTTCAACGAACGAACCCTTGAAATACTTC
CCCGGGTGCGCCTGCAGCCTATTCTAGGCCAGATGGGCGGCAATGCGGGA
GACTCGACTCGCGTTCGACGAAGGAGCCCCTGCGGCGGGATCGACGTCGA
AGATGACGAGGATAGCCGATTGAACGGCGCCGAAAGCTCCTTGCGTTCGC
CGAGCGAAGACCCGACCCTTGAAATACTTCCCCGGGTGCGCCTGCAGCCT
ATTCTAGGCCAGATGGGCGGCAATGCGGGAGACTCGACTCGCGTTCGACG
AAGGAGCCCCTGCGGCGGGATCGACGTCGAAGATGACGAGGATAGCCGAT
TGAACGGCGCCGAAAGCTCCTTGCGTTCGCCGAGCGAAGACCCG
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